Wall clock time and date at job start Tue Mar 31 2020 12:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 120.00380 * 2 1 4 4 H 1.48499 * 109.46973 * 239.99866 * 3 2 1 5 5 H 1.48505 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47190 * 119.99516 * 3 2 1 7 7 C 1.40034 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 197.07412 * 7 2 1 9 9 C 1.41543 * 119.99998 * 17.07157 * 7 2 1 10 10 C 1.41174 * 120.99433 * 203.54701 * 9 7 2 11 11 C 1.37592 * 119.01705 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10365 * 359.97438 * 11 10 9 13 13 C 1.32468 * 122.23587 * 0.02562 * 12 11 10 14 14 N 1.39471 * 119.58380 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99648 * 5.20014 * 14 13 12 16 16 O 1.21275 * 119.99918 * 355.14779 * 15 14 13 17 17 C 1.50699 * 119.99996 * 175.15829 * 15 14 13 18 18 H 1.09003 * 109.96108 * 303.95173 * 17 15 14 19 19 O 1.43349 * 109.86764 * 182.90825 * 17 15 14 20 20 C 1.43782 * 109.86680 * 240.36221 * 19 17 15 21 21 C 1.53994 * 104.63577 * 23.96686 * 20 19 17 22 22 H 1.09001 * 109.70443 * 78.31616 * 21 20 19 23 23 C 1.50957 * 112.59742 * 200.79195 * 21 20 19 24 24 O 1.42687 * 111.79409 * 66.27858 * 23 21 20 25 25 C 1.42805 * 112.78886 * 59.81546 * 24 23 21 26 26 C 1.52717 * 108.33749 * 294.59960 * 25 24 23 27 27 C 1.53118 * 110.61644 * 60.07517 * 26 25 24 28 28 H 1.09004 * 112.80174 * 76.65672 * 27 26 25 29 29 C 1.38599 * 120.83599 * 0.27122 * 13 12 11 30 30 H 0.96998 * 119.99699 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.49644 * 0.02562 * 10 9 7 32 32 H 1.07994 * 119.45065 * 179.97438 * 11 10 9 33 33 H 0.96995 * 120.00016 * 185.19513 * 14 13 12 34 34 H 1.08990 * 110.53675 * 265.08412 * 20 19 17 35 35 H 1.08999 * 110.20663 * 142.67766 * 20 19 17 36 36 H 1.09005 * 109.01442 * 186.87246 * 23 21 20 37 37 H 1.09002 * 109.01601 * 305.68240 * 23 21 20 38 38 H 1.09005 * 109.76566 * 174.82953 * 25 24 23 39 39 H 1.09003 * 109.60928 * 54.27945 * 25 24 23 40 40 H 1.09000 * 109.24820 * 299.78090 * 26 25 24 41 41 H 1.09004 * 109.24490 * 180.37091 * 26 25 24 42 42 H 1.08005 * 120.59906 * 179.72607 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6962 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6963 1.2126 7 6 2.0075 -1.2128 0.0005 8 1 3.0519 -1.2333 0.2752 9 6 1.3465 -2.4117 -0.3588 10 6 1.8237 -3.6651 0.0820 11 6 1.1498 -4.8049 -0.2921 12 7 0.0710 -4.7415 -1.0515 13 6 -0.4171 -3.5912 -1.4910 14 7 -1.5599 -3.5887 -2.2905 15 6 -2.2207 -4.7397 -2.5251 16 8 -1.7738 -5.7899 -2.1149 17 6 -3.5148 -4.7218 -3.2972 18 1 -4.2255 -4.0493 -2.8168 19 8 -4.0625 -6.0449 -3.3607 20 6 -4.1758 -6.4616 -4.7322 21 6 -3.1336 -5.6130 -5.4839 22 1 -2.1384 -6.0287 -5.3264 23 6 -3.4185 -5.5214 -6.9636 24 8 -4.6217 -4.8014 -7.2278 25 6 -4.5843 -3.4618 -6.7345 26 6 -4.5108 -3.5131 -5.2100 27 6 -3.2526 -4.2580 -4.7556 28 1 -2.3487 -3.6557 -4.8474 29 6 0.1969 -2.3904 -1.1715 30 1 -0.4849 0.8401 -0.0004 31 1 2.7047 -3.7285 0.7035 32 1 1.5090 -5.7674 0.0408 33 1 -1.8791 -2.7586 -2.6777 34 1 -5.1770 -6.2588 -5.1120 35 1 -3.9407 -7.5220 -4.8241 36 1 -2.5869 -5.0159 -7.4547 37 1 -3.5105 -6.5284 -7.3706 38 1 -5.4855 -2.9307 -7.0413 39 1 -3.7052 -2.9514 -7.1279 40 1 -5.3915 -4.0271 -4.8248 41 1 -4.4883 -2.4966 -4.8169 42 1 -0.2018 -1.4550 -1.5356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577311641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:06 Heat of formation + Delta-G solvation = -107.606329 kcal Electronic energy + Delta-G solvation = -26882.108444 eV Core-core repulsion = 23019.263558 eV Total energy + Delta-G solvation = -3862.844886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.23336 -40.87510 -39.50338 -38.39525 -36.15359 -35.58966 -34.22354 -32.92258 -32.49071 -31.04661 -29.41746 -27.92753 -26.52847 -25.15866 -24.02311 -23.85363 -22.94567 -21.30912 -20.58679 -19.47812 -18.90710 -17.76533 -17.70456 -17.35124 -16.99817 -16.75121 -16.24517 -16.09868 -16.04852 -15.90042 -15.59803 -15.27619 -14.82343 -14.60511 -14.36316 -14.21745 -14.06398 -14.05543 -13.35210 -13.21589 -12.93915 -12.89021 -12.65509 -12.42299 -12.13895 -12.04195 -11.95848 -11.75370 -11.52740 -11.47675 -11.16124 -11.06709 -10.75584 -10.40791 -9.97436 -9.57055 -8.90379 -8.66606 -6.58063 0.70294 0.98760 1.41564 1.51764 1.55419 1.74798 1.92838 2.19939 2.75155 2.79554 2.95914 3.12217 3.44639 3.49989 3.71866 3.74428 3.97606 3.99193 4.18080 4.20806 4.23913 4.33759 4.49389 4.57547 4.62505 4.68002 4.72406 4.77634 4.81899 4.84184 4.90424 4.94754 5.05506 5.09631 5.20535 5.22928 5.45621 5.60198 5.73357 5.89090 6.13260 6.19004 6.44659 6.55468 6.77373 6.81172 7.25478 7.81428 8.24761 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.003396 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.384078 B = 8242.556133 C = 9336.128420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.043 3.957 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.485 4.485 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.299 4.299 11 C 0.112 3.888 12 N -0.584 5.584 13 C 0.333 3.667 14 N -0.646 5.646 15 C 0.481 3.519 16 O -0.516 6.516 17 C 0.077 3.923 18 H 0.129 0.871 19 O -0.379 6.379 20 C 0.057 3.943 21 C -0.153 4.153 22 H 0.076 0.924 23 C 0.079 3.921 24 O -0.388 6.388 25 C 0.056 3.944 26 C -0.148 4.148 27 C -0.101 4.101 28 H 0.106 0.894 29 C -0.259 4.259 30 H 0.294 0.706 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.423 0.577 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.827 0.460 -14.535 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.175 4.175 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.107 3.893 10 C -0.323 4.323 11 C -0.041 4.041 12 N -0.304 5.304 13 C 0.107 3.893 14 N -0.295 5.295 15 C 0.268 3.732 16 O -0.388 6.388 17 C 0.016 3.984 18 H 0.146 0.854 19 O -0.297 6.297 20 C -0.019 4.019 21 C -0.172 4.172 22 H 0.095 0.905 23 C 0.002 3.998 24 O -0.306 6.306 25 C -0.021 4.021 26 C -0.185 4.185 27 C -0.120 4.120 28 H 0.124 0.876 29 C -0.284 4.284 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.164 0.836 33 H 0.261 0.739 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.484 -1.210 -14.415 17.866 hybrid contribution 1.208 1.682 0.754 2.204 sum -9.276 0.472 -13.661 16.520 Atomic orbital electron populations 1.69797 1.09050 1.31227 1.33319 1.26806 0.95546 1.04510 0.90668 0.85175 0.78803 0.75190 0.80119 1.18320 1.18808 1.18575 1.19862 0.98394 0.91726 1.41591 0.89789 1.17980 0.90646 0.93218 0.87447 1.22080 1.06057 0.93742 1.10424 1.22186 0.90569 0.97909 0.93451 1.67341 1.16358 1.27365 1.19334 1.18447 0.88111 0.90290 0.92419 1.43399 1.25209 1.11693 1.49235 1.21932 0.86966 0.83469 0.80880 1.90752 1.67456 1.31544 1.49061 1.23082 0.91409 0.86813 0.97135 0.85368 1.88544 1.82599 1.30818 1.27782 1.23452 0.99406 0.99389 0.79659 1.22706 1.00587 0.95595 0.98360 0.90522 1.21873 0.87965 0.98731 0.91270 1.88013 1.37808 1.25750 1.79059 1.22699 1.03968 0.83507 0.91897 1.22248 0.95820 1.02269 0.98169 1.22748 1.01398 0.97322 0.90488 0.87554 1.21515 1.03149 0.95671 1.08113 0.89496 0.86654 0.83580 0.73909 0.89598 0.89255 0.91616 0.87110 0.86542 0.91806 0.90547 0.87909 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.65 10.94 21.84 0.24 -38.41 16 2 C 0.04 1.98 5.19 85.29 0.44 2.43 16 3 Si 0.99 34.86 29.59 68.60 2.03 36.89 16 4 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 5 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 6 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 7 C -0.49 -24.85 9.12 23.52 0.21 -24.64 16 8 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 9 C 0.12 6.14 5.60 -21.12 -0.12 6.02 16 10 C -0.30 -15.03 9.90 22.84 0.23 -14.81 16 11 C 0.11 5.57 11.15 84.50 0.94 6.51 16 12 N -0.58 -30.91 7.85 -193.53 -1.52 -32.43 16 13 C 0.33 16.42 7.42 132.75 0.98 17.41 16 14 N -0.65 -25.13 5.23 -308.66 -1.62 -26.74 16 15 C 0.48 18.80 7.10 87.66 0.62 19.42 16 16 O -0.52 -25.79 14.78 15.75 0.23 -25.56 16 17 C 0.08 2.13 3.21 30.63 0.10 2.23 16 18 H 0.13 2.95 7.73 -2.39 -0.02 2.93 16 19 O -0.38 -11.86 10.58 -130.21 -1.38 -13.24 16 20 C 0.06 1.29 6.76 72.32 0.49 1.78 16 21 C -0.15 -3.14 3.04 -10.68 -0.03 -3.17 16 22 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 23 C 0.08 1.21 6.18 71.32 0.44 1.65 16 24 O -0.39 -6.44 10.55 -148.98 -1.57 -8.01 16 25 C 0.06 0.69 6.81 71.89 0.49 1.18 16 26 C -0.15 -2.05 4.89 30.54 0.15 -1.90 16 27 C -0.10 -2.01 3.15 -9.54 -0.03 -2.04 16 28 H 0.11 2.11 7.81 -2.38 -0.02 2.09 16 29 C -0.26 -13.20 8.62 22.98 0.20 -13.01 16 30 H 0.29 12.47 8.29 -92.71 -0.77 11.70 16 31 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 32 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 33 H 0.42 12.84 8.68 -92.71 -0.80 12.03 16 34 H 0.09 1.68 7.46 -2.39 -0.02 1.67 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 0.90 8.13 -2.38 -0.02 0.88 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.06 0.70 8.11 -2.39 -0.02 0.68 16 40 H 0.08 1.15 7.23 -2.39 -0.02 1.14 16 41 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.13 6.31 6.21 -2.91 -0.02 6.30 16 Total: -1.00 -72.57 343.37 1.79 -70.78 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.25 Total: 37.65 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 5.12 Total: -0.94 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -2.90 Total: -97.58 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -2.72 Total: -46.81 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -72.57 1.79 -70.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577311641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.824 kcal (2) G-P(sol) polarization free energy of solvation -72.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds