Wall clock time and date at job start Tue Mar 31 2020 12:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21248 * 120.00082 * 2 1 4 4 C 1.47185 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.39768 * 120.13710 * 353.80992 * 4 2 1 6 6 C 1.38583 * 119.74359 * 180.02562 * 5 4 2 7 7 N 1.39765 * 119.98794 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99789 * 139.15678 * 7 6 5 9 9 O 1.21366 * 120.00373 * 4.72373 * 8 7 6 10 10 C 1.49355 * 119.99606 * 184.73300 * 8 7 6 11 11 O 1.21357 * 120.00099 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99915 * 179.97438 * 10 8 7 13 13 C 1.46502 * 119.99907 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.47747 * 325.00579 * 13 12 10 15 15 C 1.53008 * 109.46554 * 85.00673 * 13 12 10 16 16 C 1.50692 * 109.47009 * 205.00083 * 13 12 10 17 17 H 1.08002 * 120.00513 * 354.46771 * 16 13 12 18 18 C 1.37885 * 120.00014 * 174.46754 * 16 13 12 19 19 N 1.31511 * 120.00188 * 160.61921 * 18 16 13 20 20 Si 1.86802 * 119.99754 * 340.88678 * 18 16 13 21 21 H 1.48499 * 109.47132 * 269.72921 * 20 18 16 22 22 H 1.48506 * 109.46687 * 29.72898 * 20 18 16 23 23 H 1.48502 * 109.46913 * 149.72435 * 20 18 16 24 24 C 1.39088 * 120.02088 * 0.25824 * 6 5 4 25 25 C 1.38244 * 120.27068 * 359.48381 * 24 6 5 26 26 C 1.37961 * 120.25440 * 0.51498 * 25 24 6 27 27 C 1.50704 * 120.00744 * 179.71814 * 26 25 24 28 28 H 1.08996 * 109.47048 * 269.99291 * 1 2 3 29 29 H 1.08997 * 109.46941 * 29.99627 * 1 2 3 30 30 H 1.09003 * 109.47269 * 149.99561 * 1 2 3 31 31 H 1.07996 * 120.12709 * 0.04892 * 5 4 2 32 32 H 0.97005 * 120.00093 * 319.14707 * 7 6 5 33 33 H 0.96996 * 120.00049 * 0.02562 * 12 10 8 34 34 H 1.08999 * 109.46826 * 174.20213 * 15 13 12 35 35 H 1.08999 * 109.46939 * 294.19419 * 15 13 12 36 36 H 1.08997 * 109.47139 * 54.19756 * 15 13 12 37 37 H 0.97006 * 119.99802 * 355.19883 * 19 18 16 38 38 H 1.08001 * 119.86537 * 179.74861 * 24 6 5 39 39 H 1.08000 * 119.86991 * 180.23670 * 25 24 6 40 40 H 1.08994 * 109.47503 * 263.34981 * 27 26 25 41 41 H 1.09004 * 109.47263 * 23.35476 * 27 26 25 42 42 H 1.08998 * 109.47120 * 143.35030 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5530 -2.4833 0.1292 6 6 2.2541 -3.6787 0.1282 7 7 1.5695 -4.8902 0.2582 8 6 1.9335 -5.9532 -0.4862 9 8 2.9084 -5.8848 -1.2058 10 6 1.1370 -7.2151 -0.4256 11 8 0.1623 -7.2836 0.2943 12 7 1.5006 -8.2780 -1.1703 13 6 0.7197 -9.5160 -1.1104 14 1 0.3443 -9.6603 -0.0973 15 6 -0.4583 -9.4233 -2.0825 16 6 1.5955 -10.6813 -1.4923 17 1 2.6035 -10.5084 -1.8393 18 6 1.1100 -11.9685 -1.3987 19 7 1.6917 -12.9409 -2.0661 20 14 -0.3787 -12.3296 -0.3296 21 1 0.0695 -12.6700 1.0445 22 1 -1.2559 -11.1323 -0.2819 23 1 -1.1332 -13.4735 -0.9019 24 6 3.6394 -3.6728 0.0038 25 6 4.3220 -2.4781 -0.1300 26 6 3.6354 -1.2815 -0.1304 27 6 4.3858 0.0179 -0.2702 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.4777 -2.4856 0.2295 32 1 0.8324 -4.9660 0.8843 33 1 2.2799 -8.2234 -1.7454 34 1 -0.9790 -10.3804 -2.1146 35 1 -1.1458 -8.6468 -1.7472 36 1 -0.0893 -9.1768 -3.0780 37 1 2.4179 -12.7425 -2.6779 38 1 4.1837 -4.6057 0.0074 39 1 5.3974 -2.4814 -0.2300 40 1 4.5586 0.4458 0.7172 41 1 5.3425 -0.1657 -0.7591 42 1 3.7989 0.7136 -0.8699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580568945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:52 Heat of formation + Delta-G solvation = -80.484543 kcal Electronic energy + Delta-G solvation = -25615.922870 eV Core-core repulsion = 21754.254073 eV Total energy + Delta-G solvation = -3861.668797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12099 -40.22866 -38.86620 -37.89972 -35.68092 -34.94090 -32.66375 -32.51628 -31.66021 -29.94470 -29.68015 -27.15610 -25.11972 -24.46168 -24.15711 -21.81954 -21.24265 -19.97975 -19.71476 -18.95299 -17.72257 -17.25741 -16.33316 -16.31391 -15.97821 -15.49365 -15.46013 -15.23792 -15.09442 -14.44045 -14.18860 -13.90925 -13.78712 -13.55239 -13.30107 -12.82369 -12.76967 -12.55545 -12.45014 -12.31155 -12.29281 -12.17868 -11.81708 -11.76616 -11.48750 -11.36740 -10.64437 -10.45094 -10.29558 -9.85945 -9.82083 -9.41658 -9.26238 -9.21650 -8.51106 -8.43903 -8.40540 -6.67619 -4.31581 0.34055 0.84452 1.62127 2.08147 2.45898 3.32399 3.34464 3.38128 3.51337 3.52265 3.68846 3.87994 4.35983 4.38119 4.60664 4.63457 4.80892 4.82764 4.94452 5.01954 5.06328 5.07197 5.16575 5.37015 5.46117 5.49131 5.63930 5.70351 5.88528 6.00574 6.08166 6.23339 6.24990 6.37034 6.50101 6.57955 6.74526 6.84164 7.06573 7.15864 7.17988 7.44740 7.68379 8.12471 8.19732 8.40450 8.70384 9.36546 10.71970 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029390 B = 0.002464 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.485928 B =11360.471278 C =11975.898342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.397 3.603 3 O -0.454 6.454 4 C -0.163 4.163 5 C -0.088 4.088 6 C 0.126 3.874 7 N -0.654 5.654 8 C 0.510 3.490 9 O -0.504 6.504 10 C 0.496 3.504 11 O -0.536 6.536 12 N -0.661 5.661 13 C 0.240 3.760 14 H 0.049 0.951 15 C -0.154 4.154 16 C -0.626 4.626 17 H 0.065 0.935 18 C 0.044 3.956 19 N -0.891 5.891 20 Si 1.037 2.963 21 H -0.282 1.282 22 H -0.269 1.269 23 H -0.282 1.282 24 C -0.075 4.075 25 C -0.118 4.118 26 C -0.035 4.035 27 C -0.120 4.120 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.424 0.576 33 H 0.407 0.593 34 H 0.060 0.940 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.272 0.728 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 23.922 4.906 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.276 3.724 3 O -0.331 6.331 4 C -0.165 4.165 5 C -0.108 4.108 6 C 0.033 3.967 7 N -0.302 5.302 8 C 0.293 3.707 9 O -0.377 6.377 10 C 0.274 3.726 11 O -0.415 6.415 12 N -0.310 5.310 13 C 0.137 3.863 14 H 0.066 0.934 15 C -0.213 4.213 16 C -0.663 4.663 17 H 0.083 0.917 18 C -0.163 4.163 19 N -0.522 5.522 20 Si 0.864 3.136 21 H -0.208 1.208 22 H -0.194 1.194 23 H -0.208 1.208 24 C -0.095 4.095 25 C -0.136 4.136 26 C -0.036 4.036 27 C -0.176 4.176 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.157 0.843 32 H 0.262 0.738 33 H 0.242 0.758 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.968 23.105 5.391 23.746 hybrid contribution 1.020 0.913 -0.593 1.491 sum 0.052 24.018 4.799 24.493 Atomic orbital electron populations 1.22255 0.93700 1.05087 1.04859 1.22415 0.91596 0.87423 0.70964 1.90496 1.71539 1.34488 1.36560 1.20090 0.93905 0.94232 1.08269 1.21249 1.00020 0.90255 0.99287 1.17581 0.91364 0.84954 1.02831 1.43176 1.36386 1.08787 1.41863 1.20878 0.85068 0.85162 0.79628 1.90758 1.25886 1.82670 1.38340 1.19697 0.85503 0.84548 0.82819 1.90725 1.27398 1.82943 1.40424 1.46277 1.30716 1.12373 1.41600 1.19305 0.90000 0.80424 0.96524 0.93375 1.22410 0.98370 1.00455 1.00028 1.22033 1.01170 0.91302 1.51799 0.91681 1.25685 1.02039 0.91927 0.96698 1.70821 1.23470 1.34959 1.22991 0.84155 0.76295 0.76473 0.76694 1.20850 1.19437 1.20798 1.21520 0.92592 0.99480 0.95942 1.20984 1.00398 0.90947 1.01319 1.20241 0.92465 0.96122 0.94797 1.21071 0.99351 0.94102 1.03123 0.88340 0.89323 0.89456 0.84346 0.73796 0.75821 0.92132 0.94978 0.93430 0.91788 0.84165 0.84832 0.90634 0.92058 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.12 9.63 36.01 0.35 -0.78 16 2 C 0.40 3.53 7.16 -30.68 -0.22 3.31 16 3 O -0.45 -5.13 14.08 5.59 0.08 -5.05 16 4 C -0.16 -1.57 5.87 -105.09 -0.62 -2.19 16 5 C -0.09 -0.80 9.24 -38.88 -0.36 -1.16 16 6 C 0.13 1.42 6.17 -83.80 -0.52 0.90 16 7 N -0.65 -7.86 5.30 -10.33 -0.05 -7.91 16 8 C 0.51 7.83 7.70 -11.63 -0.09 7.74 16 9 O -0.50 -8.49 14.30 5.48 0.08 -8.41 16 10 C 0.50 9.02 7.85 -11.63 -0.09 8.92 16 11 O -0.54 -10.54 16.14 5.49 0.09 -10.45 16 12 N -0.66 -13.25 5.06 -55.39 -0.28 -13.53 16 13 C 0.24 5.53 2.11 -69.08 -0.15 5.38 16 14 H 0.05 1.17 6.06 -51.93 -0.31 0.86 16 15 C -0.15 -3.30 8.86 37.16 0.33 -2.97 16 16 C -0.63 -16.45 8.99 -34.44 -0.31 -16.76 16 17 H 0.07 1.81 7.96 -52.49 -0.42 1.39 16 18 C 0.04 1.20 5.27 -17.82 -0.09 1.11 16 19 N -0.89 -25.86 13.70 55.43 0.76 -25.10 16 20 Si 1.04 23.91 26.27 -169.99 -4.47 19.44 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -5.80 5.78 56.52 0.33 -5.47 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.08 -0.87 8.67 -39.26 -0.34 -1.21 16 25 C -0.12 -1.18 9.65 -39.68 -0.38 -1.56 16 26 C -0.04 -0.35 5.92 -104.12 -0.62 -0.97 16 27 C -0.12 -1.07 8.72 36.01 0.31 -0.75 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.39 6.73 -51.93 -0.35 0.04 16 31 H 0.14 0.89 6.53 -52.49 -0.34 0.54 16 32 H 0.42 4.33 8.30 -40.82 -0.34 3.99 16 33 H 0.41 7.81 7.99 -40.82 -0.33 7.48 16 34 H 0.06 1.31 5.45 -51.93 -0.28 1.03 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.27 7.84 8.73 -40.82 -0.36 7.48 16 38 H 0.14 1.76 6.67 -52.49 -0.35 1.41 16 39 H 0.13 1.07 8.05 -52.49 -0.42 0.64 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 42 H 0.09 0.89 5.86 -51.93 -0.30 0.59 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -31.19 353.75 -6.47 -37.65 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.21 Total: 9.01 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.79 Total: -0.98 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.42 Total: -46.54 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.25 Total: -23.92 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -4.47 Total: 19.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.19 -6.47 -37.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580568945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.832 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds