Wall clock time and date at job start Tue Mar 31 2020 12:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21248 * 120.00082 * 2 1 4 4 C 1.47185 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.39768 * 120.13710 * 353.80992 * 4 2 1 6 6 C 1.38583 * 119.74359 * 180.02562 * 5 4 2 7 7 N 1.39765 * 119.98794 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99789 * 139.15678 * 7 6 5 9 9 O 1.21366 * 120.00373 * 4.72373 * 8 7 6 10 10 C 1.49355 * 119.99606 * 184.73300 * 8 7 6 11 11 O 1.21357 * 120.00099 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99915 * 179.97438 * 10 8 7 13 13 C 1.46502 * 119.99907 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.47747 * 325.00579 * 13 12 10 15 15 C 1.53008 * 109.46554 * 85.00673 * 13 12 10 16 16 C 1.50692 * 109.47009 * 205.00083 * 13 12 10 17 17 H 1.08002 * 120.00513 * 354.46771 * 16 13 12 18 18 C 1.37885 * 120.00014 * 174.46754 * 16 13 12 19 19 N 1.31511 * 120.00188 * 160.61921 * 18 16 13 20 20 Si 1.86802 * 119.99754 * 340.88678 * 18 16 13 21 21 H 1.48499 * 109.47132 * 269.72921 * 20 18 16 22 22 H 1.48506 * 109.46687 * 29.72898 * 20 18 16 23 23 H 1.48502 * 109.46913 * 149.72435 * 20 18 16 24 24 C 1.39088 * 120.02088 * 0.25824 * 6 5 4 25 25 C 1.38244 * 120.27068 * 359.48381 * 24 6 5 26 26 C 1.37961 * 120.25440 * 0.51498 * 25 24 6 27 27 C 1.50704 * 120.00744 * 179.71814 * 26 25 24 28 28 H 1.08996 * 109.47048 * 269.99291 * 1 2 3 29 29 H 1.08997 * 109.46941 * 29.99627 * 1 2 3 30 30 H 1.09003 * 109.47269 * 149.99561 * 1 2 3 31 31 H 1.07996 * 120.12709 * 0.04892 * 5 4 2 32 32 H 0.97005 * 120.00093 * 319.14707 * 7 6 5 33 33 H 0.96996 * 120.00049 * 0.02562 * 12 10 8 34 34 H 1.08999 * 109.46826 * 174.20213 * 15 13 12 35 35 H 1.08999 * 109.46939 * 294.19419 * 15 13 12 36 36 H 1.08997 * 109.47139 * 54.19756 * 15 13 12 37 37 H 0.97006 * 119.99802 * 355.19883 * 19 18 16 38 38 H 1.08001 * 119.86537 * 179.74861 * 24 6 5 39 39 H 1.08000 * 119.86991 * 180.23670 * 25 24 6 40 40 H 1.08994 * 109.47503 * 263.34981 * 27 26 25 41 41 H 1.09004 * 109.47263 * 23.35476 * 27 26 25 42 42 H 1.08998 * 109.47120 * 143.35030 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5530 -2.4833 0.1292 6 6 2.2541 -3.6787 0.1282 7 7 1.5695 -4.8902 0.2582 8 6 1.9335 -5.9532 -0.4862 9 8 2.9084 -5.8848 -1.2058 10 6 1.1370 -7.2151 -0.4256 11 8 0.1623 -7.2836 0.2943 12 7 1.5006 -8.2780 -1.1703 13 6 0.7197 -9.5160 -1.1104 14 1 0.3443 -9.6603 -0.0973 15 6 -0.4583 -9.4233 -2.0825 16 6 1.5955 -10.6813 -1.4923 17 1 2.6035 -10.5084 -1.8393 18 6 1.1100 -11.9685 -1.3987 19 7 1.6917 -12.9409 -2.0661 20 14 -0.3787 -12.3296 -0.3296 21 1 0.0695 -12.6700 1.0445 22 1 -1.2559 -11.1323 -0.2819 23 1 -1.1332 -13.4735 -0.9019 24 6 3.6394 -3.6728 0.0038 25 6 4.3220 -2.4781 -0.1300 26 6 3.6354 -1.2815 -0.1304 27 6 4.3858 0.0179 -0.2702 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.4777 -2.4856 0.2295 32 1 0.8324 -4.9660 0.8843 33 1 2.2799 -8.2234 -1.7454 34 1 -0.9790 -10.3804 -2.1146 35 1 -1.1458 -8.6468 -1.7472 36 1 -0.0893 -9.1768 -3.0780 37 1 2.4179 -12.7425 -2.6779 38 1 4.1837 -4.6057 0.0074 39 1 5.3974 -2.4814 -0.2300 40 1 4.5586 0.4458 0.7172 41 1 5.3425 -0.1657 -0.7591 42 1 3.7989 0.7136 -0.8699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580568945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:51 Heat of formation + Delta-G solvation = -101.948449 kcal Electronic energy + Delta-G solvation = -25616.853615 eV Core-core repulsion = 21754.254073 eV Total energy + Delta-G solvation = -3862.599542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20371 -41.17908 -40.06462 -38.94142 -37.17248 -36.20246 -34.50035 -33.33401 -32.52127 -31.68976 -30.28130 -28.05095 -26.94939 -25.78368 -24.95948 -22.92613 -22.35482 -21.48224 -20.72569 -20.39373 -19.24433 -18.47291 -17.68320 -17.32697 -16.81306 -16.75913 -16.50139 -16.16214 -16.07724 -15.55263 -15.31640 -15.04579 -14.92461 -14.75780 -14.64424 -14.41537 -14.26263 -13.55156 -13.45433 -13.29451 -13.20015 -13.12027 -13.02948 -12.84024 -12.66995 -12.47330 -12.45063 -12.11078 -11.58120 -11.39955 -11.20445 -10.83662 -10.52240 -10.48766 -10.14944 -10.09251 -9.31126 -8.83261 -6.47252 -0.43329 -0.07534 0.44091 1.20134 1.39617 1.51579 1.52780 1.73252 2.05864 2.45566 2.60255 2.64732 2.98131 3.06764 3.37136 3.69285 3.86509 3.95178 4.15241 4.24929 4.28248 4.44508 4.55534 4.64121 4.67156 4.69438 4.71100 4.78514 4.83957 4.92482 5.00261 5.04188 5.16401 5.22184 5.25414 5.29892 5.42561 5.49571 5.54843 5.74666 5.90059 5.98315 6.41437 6.47738 6.52217 6.67479 6.93979 7.28661 8.55569 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029390 B = 0.002464 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.485928 B =11360.471278 C =11975.898342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.397 3.603 3 O -0.483 6.483 4 C -0.172 4.172 5 C -0.070 4.070 6 C 0.105 3.895 7 N -0.633 5.633 8 C 0.518 3.482 9 O -0.522 6.522 10 C 0.500 3.500 11 O -0.547 6.547 12 N -0.670 5.670 13 C 0.243 3.757 14 H 0.042 0.958 15 C -0.150 4.150 16 C -0.624 4.624 17 H 0.037 0.963 18 C -0.002 4.002 19 N -0.923 5.923 20 Si 1.074 2.926 21 H -0.274 1.274 22 H -0.244 1.244 23 H -0.280 1.280 24 C -0.089 4.089 25 C -0.120 4.120 26 C -0.043 4.043 27 C -0.117 4.117 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.434 0.566 33 H 0.409 0.591 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.259 0.741 38 H 0.126 0.874 39 H 0.150 0.850 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 25.923 5.895 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.278 3.722 3 O -0.362 6.362 4 C -0.174 4.174 5 C -0.090 4.090 6 C 0.012 3.988 7 N -0.281 5.281 8 C 0.300 3.700 9 O -0.397 6.397 10 C 0.280 3.720 11 O -0.426 6.426 12 N -0.320 5.320 13 C 0.139 3.861 14 H 0.059 0.941 15 C -0.208 4.208 16 C -0.661 4.661 17 H 0.055 0.945 18 C -0.203 4.203 19 N -0.556 5.556 20 Si 0.895 3.105 21 H -0.199 1.199 22 H -0.167 1.167 23 H -0.206 1.206 24 C -0.109 4.109 25 C -0.138 4.138 26 C -0.044 4.044 27 C -0.173 4.173 28 H 0.136 0.864 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.188 0.812 32 H 0.274 0.726 33 H 0.244 0.756 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.823 25.161 6.402 26.115 hybrid contribution 1.692 0.430 -0.886 1.958 sum -1.131 25.591 5.516 26.203 Atomic orbital electron populations 1.22295 0.90738 1.06096 1.06350 1.22848 0.93118 0.86488 0.69733 1.90497 1.72438 1.35223 1.38028 1.20362 0.93998 0.95001 1.07991 1.21469 1.01448 0.88921 0.97156 1.17718 0.91391 0.85010 1.04659 1.42956 1.36160 1.08196 1.40822 1.20217 0.84614 0.84911 0.80227 1.90766 1.26567 1.82833 1.39568 1.20038 0.85344 0.84957 0.81656 1.90710 1.27965 1.83386 1.40563 1.46109 1.30910 1.12312 1.42627 1.19055 0.90065 0.80588 0.96376 0.94064 1.22315 0.97856 1.00918 0.99724 1.22187 1.00442 0.92867 1.50651 0.94516 1.26963 1.04146 0.92100 0.97115 1.70934 1.24341 1.35851 1.24510 0.83695 0.73906 0.77421 0.75467 1.19946 1.16724 1.20572 1.21527 0.93086 0.99471 0.96860 1.21132 1.01287 0.90425 1.00980 1.20510 0.93121 0.96436 0.94307 1.21043 0.99744 0.93340 1.03161 0.86401 0.88916 0.87874 0.81203 0.72601 0.75595 0.92406 0.93250 0.93155 0.93174 0.85628 0.83272 0.90474 0.90669 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 9.63 71.24 0.69 -0.85 16 2 C 0.40 6.19 7.16 28.04 0.20 6.39 16 3 O -0.48 -10.29 14.08 -2.93 -0.04 -10.34 16 4 C -0.17 -2.93 5.87 -20.17 -0.12 -3.05 16 5 C -0.07 -1.07 9.24 22.72 0.21 -0.86 16 6 C 0.11 2.16 6.17 38.16 0.24 2.40 16 7 N -0.63 -13.94 5.30 -304.95 -1.62 -15.56 16 8 C 0.52 15.30 7.70 87.24 0.67 15.97 16 9 O -0.52 -17.37 14.30 -3.30 -0.05 -17.42 16 10 C 0.50 17.53 7.85 87.24 0.68 18.22 16 11 O -0.55 -20.39 16.14 -3.27 -0.05 -20.44 16 12 N -0.67 -26.52 5.06 -447.53 -2.27 -28.78 16 13 C 0.24 10.98 2.11 44.24 0.09 11.07 16 14 H 0.04 1.94 6.06 -2.39 -0.01 1.93 16 15 C -0.15 -6.15 8.86 71.98 0.64 -5.51 16 16 C -0.62 -33.19 8.99 25.60 0.23 -32.96 16 17 H 0.04 2.11 7.96 -2.91 -0.02 2.09 16 18 C 0.00 -0.11 5.27 84.66 0.45 0.34 16 19 N -0.92 -54.70 13.70 21.45 0.29 -54.41 16 20 Si 1.07 47.39 26.27 68.60 1.80 49.19 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.24 -9.67 5.78 99.48 0.57 -9.09 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 C -0.09 -1.99 8.67 22.48 0.19 -1.80 16 25 C -0.12 -2.26 9.65 22.21 0.21 -2.05 16 26 C -0.04 -0.80 5.92 -19.54 -0.12 -0.91 16 27 C -0.12 -1.94 8.72 71.24 0.62 -1.32 16 28 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.49 6.73 -2.39 -0.02 0.47 16 31 H 0.17 1.44 6.53 -2.91 -0.02 1.42 16 32 H 0.43 7.73 8.30 -92.70 -0.77 6.96 16 33 H 0.41 15.81 7.99 -92.71 -0.74 15.07 16 34 H 0.06 2.39 5.45 -2.39 -0.01 2.37 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.26 15.51 8.73 -92.70 -0.81 14.70 16 38 H 0.13 3.15 6.67 -2.91 -0.02 3.14 16 39 H 0.15 2.21 8.05 -2.91 -0.02 2.19 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.00 8.04 -2.38 -0.02 0.98 16 42 H 0.08 1.52 5.86 -2.39 -0.01 1.50 16 Total: -1.00 -67.58 353.75 2.37 -65.20 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.59 Total: 27.48 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 4.89 Total: 5.07 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -3.59 Total: -98.75 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.14 Total: -48.19 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.80 Total: 49.19 kcal Total: -67.58 2.37 -65.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580568945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.746 kcal (2) G-P(sol) polarization free energy of solvation -67.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds