Wall clock time and date at job start Tue Mar 31 2020 12:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21253 * 119.99912 * 2 1 4 4 C 1.47183 * 119.99593 * 179.97438 * 2 1 3 5 5 C 1.39754 * 120.14024 * 354.43178 * 4 2 1 6 6 C 1.38584 * 119.74660 * 180.02562 * 5 4 2 7 7 N 1.39764 * 119.99349 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00061 * 141.25146 * 7 6 5 9 9 O 1.21381 * 120.00027 * 4.52615 * 8 7 6 10 10 C 1.49359 * 119.99918 * 184.52554 * 8 7 6 11 11 O 1.21354 * 119.99738 * 0.02562 * 10 8 7 12 12 N 1.34781 * 119.99930 * 179.72774 * 10 8 7 13 13 C 1.46495 * 120.00008 * 180.27610 * 12 10 8 14 14 H 1.08998 * 109.47220 * 34.99854 * 13 12 10 15 15 C 1.52995 * 109.47183 * 274.99800 * 13 12 10 16 16 C 1.50699 * 109.47089 * 154.99550 * 13 12 10 17 17 H 1.07995 * 120.00033 * 6.22282 * 16 13 12 18 18 C 1.37882 * 119.99797 * 186.21581 * 16 13 12 19 19 N 1.31514 * 119.99874 * 8.26137 * 18 16 13 20 20 Si 1.86803 * 119.99856 * 188.26013 * 18 16 13 21 21 H 1.48503 * 109.46493 * 84.99442 * 20 18 16 22 22 H 1.48497 * 109.46971 * 204.99055 * 20 18 16 23 23 H 1.48494 * 109.46968 * 324.99895 * 20 18 16 24 24 C 1.39091 * 120.01805 * 0.27347 * 6 5 4 25 25 C 1.38242 * 120.27006 * 359.45237 * 24 6 5 26 26 C 1.37965 * 120.25892 * 0.54738 * 25 24 6 27 27 C 1.50699 * 120.01181 * 179.70337 * 26 25 24 28 28 H 1.09001 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46831 * 300.00608 * 1 2 3 30 30 H 1.09006 * 109.46659 * 60.00009 * 1 2 3 31 31 H 1.07998 * 120.12810 * 0.04686 * 5 4 2 32 32 H 0.96992 * 119.99860 * 321.25486 * 7 6 5 33 33 H 0.97006 * 119.99701 * 0.27124 * 12 10 8 34 34 H 1.08997 * 109.47614 * 183.54597 * 15 13 12 35 35 H 1.08999 * 109.46977 * 303.54729 * 15 13 12 36 36 H 1.09005 * 109.47137 * 63.54271 * 15 13 12 37 37 H 0.96998 * 119.99745 * 179.97438 * 19 18 16 38 38 H 1.08000 * 119.86472 * 179.70394 * 24 6 5 39 39 H 1.07995 * 119.86843 * 180.25154 * 25 24 6 40 40 H 1.09001 * 109.46777 * 263.15844 * 27 26 25 41 41 H 1.09002 * 109.46922 * 23.15939 * 27 26 25 42 42 H 1.09001 * 109.46679 * 143.15922 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5520 -2.4838 0.1184 6 6 2.2530 -3.6792 0.1185 7 7 1.5672 -4.8914 0.2355 8 6 1.9652 -5.9625 -0.4791 9 8 2.9673 -5.8988 -1.1610 10 6 1.1732 -7.2279 -0.4318 11 8 0.1711 -7.2914 0.2497 12 7 1.5682 -8.2974 -1.1507 13 6 0.7880 -9.5366 -1.1091 14 1 -0.2716 -9.2962 -1.0228 15 6 1.2214 -10.3718 0.0974 16 6 1.0236 -10.3212 -2.3739 17 1 1.7625 -9.9869 -3.0870 18 6 0.2959 -11.4661 -2.6207 19 7 -0.7122 -11.7857 -1.8388 20 14 0.7418 -12.5630 -4.0654 21 1 1.8162 -13.5042 -3.6591 22 1 -0.4552 -13.3321 -4.4909 23 1 1.2189 -11.7248 -5.1945 24 6 3.6395 -3.6728 0.0075 25 6 4.3232 -2.4775 -0.1148 26 6 3.6367 -1.2808 -0.1162 27 6 4.3882 0.0192 -0.2431 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.4758 -2.4865 0.2086 32 1 0.8048 -4.9617 0.8309 33 1 2.3690 -8.2464 -1.6957 34 1 0.6862 -11.3213 0.0931 35 1 2.2938 -10.5590 0.0433 36 1 0.9929 -9.8300 1.0153 37 1 -1.2244 -12.5909 -2.0126 38 1 4.1837 -4.6056 0.0127 39 1 5.3994 -2.4803 -0.2047 40 1 4.5488 0.4442 0.7477 41 1 5.3510 -0.1628 -0.7207 42 1 3.8085 0.7164 -0.8480 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580568946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:57 Heat of formation + Delta-G solvation = -80.324105 kcal Electronic energy + Delta-G solvation = -25538.199628 eV Core-core repulsion = 21676.537787 eV Total energy + Delta-G solvation = -3861.661840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05422 -40.15007 -38.74621 -37.79388 -35.55441 -34.80109 -32.64181 -32.43292 -31.60312 -29.61130 -29.33863 -27.07765 -25.36008 -24.50547 -24.11835 -21.81159 -21.29788 -20.02652 -19.59958 -18.79233 -17.58365 -16.56065 -16.19943 -16.03523 -15.84947 -15.43857 -15.40457 -15.20505 -15.01807 -14.39022 -14.27726 -14.05146 -13.76413 -13.54318 -13.26703 -12.66996 -12.52872 -12.47995 -12.41569 -12.24924 -12.14452 -11.94401 -11.69122 -11.30385 -11.16795 -11.11208 -10.85142 -10.49870 -10.41141 -10.33735 -9.78287 -9.31891 -9.25060 -9.12522 -8.63883 -8.36697 -8.21784 -6.24057 -4.30742 0.38791 0.90450 1.73165 2.14064 2.55757 3.21498 3.28285 3.30485 3.41099 3.62823 3.73989 3.98437 4.29458 4.41021 4.62577 4.65511 4.92167 4.96765 5.01399 5.07843 5.09161 5.10670 5.23191 5.41826 5.51857 5.54452 5.67439 5.74812 5.94262 6.05536 6.13611 6.29722 6.60295 6.64282 6.71332 6.89957 6.96044 7.12343 7.22666 7.30099 7.54827 7.64321 7.80744 7.90434 8.36000 8.55175 8.79304 9.35379 10.84350 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.002365 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.778004 B =11834.139522 C =12124.878665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.397 3.603 3 O -0.456 6.456 4 C -0.162 4.162 5 C -0.091 4.091 6 C 0.128 3.872 7 N -0.653 5.653 8 C 0.509 3.491 9 O -0.506 6.506 10 C 0.495 3.505 11 O -0.534 6.534 12 N -0.667 5.667 13 C 0.260 3.740 14 H 0.062 0.938 15 C -0.143 4.143 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.070 3.930 19 N -0.881 5.881 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.077 4.077 25 C -0.118 4.118 26 C -0.037 4.037 27 C -0.120 4.120 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.424 0.576 33 H 0.402 0.598 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.021 0.979 37 H 0.266 0.734 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 20.053 5.320 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.277 3.723 3 O -0.333 6.333 4 C -0.164 4.164 5 C -0.111 4.111 6 C 0.034 3.966 7 N -0.301 5.301 8 C 0.292 3.708 9 O -0.379 6.379 10 C 0.273 3.727 11 O -0.412 6.412 12 N -0.315 5.315 13 C 0.159 3.841 14 H 0.079 0.921 15 C -0.202 4.202 16 C -0.578 4.578 17 H 0.083 0.917 18 C -0.134 4.134 19 N -0.518 5.518 20 Si 0.729 3.271 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.098 4.098 25 C -0.136 4.136 26 C -0.038 4.038 27 C -0.176 4.176 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.158 0.842 32 H 0.262 0.738 33 H 0.237 0.763 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.600 20.326 5.302 21.740 hybrid contribution 0.107 -0.942 -0.721 1.192 sum 5.707 19.384 4.581 20.719 Atomic orbital electron populations 1.22258 0.93754 1.05013 1.04984 1.22411 0.91588 0.87447 0.70872 1.90492 1.71486 1.34520 1.36762 1.20083 0.93874 0.94226 1.08214 1.21290 1.00054 0.90265 0.99486 1.17613 0.91419 0.85003 1.02527 1.43200 1.34092 1.08353 1.44499 1.21014 0.85382 0.85310 0.79062 1.90740 1.24684 1.83144 1.39341 1.19626 0.85779 0.84370 0.82890 1.90736 1.25611 1.83436 1.41466 1.46507 1.29026 1.12704 1.43301 1.18999 0.92380 0.77883 0.94840 0.92059 1.22036 0.99599 1.01889 0.96642 1.21141 1.22675 1.09416 1.04590 0.91733 1.24884 0.94077 0.97595 0.96866 1.69963 1.17723 1.25421 1.38666 0.86453 0.78056 0.80500 0.82103 1.20297 1.21079 1.19773 1.21540 0.92586 0.99522 0.96103 1.20979 1.00342 0.90965 1.01351 1.20232 0.92456 0.96109 0.95018 1.21068 0.99283 0.94141 1.03120 0.89723 0.88703 0.88680 0.84214 0.73790 0.76315 0.90367 0.94865 0.95965 0.92379 0.84002 0.84893 0.90700 0.92111 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 10.19 36.01 0.37 -0.86 16 2 C 0.40 3.70 7.16 -30.67 -0.22 3.48 16 3 O -0.46 -5.30 14.07 5.58 0.08 -5.22 16 4 C -0.16 -1.63 5.87 -105.09 -0.62 -2.24 16 5 C -0.09 -0.87 9.35 -38.89 -0.36 -1.23 16 6 C 0.13 1.49 6.21 -83.80 -0.52 0.97 16 7 N -0.65 -8.21 5.31 -10.33 -0.05 -8.26 16 8 C 0.51 8.07 7.71 -11.63 -0.09 7.98 16 9 O -0.51 -8.62 14.16 5.47 0.08 -8.54 16 10 C 0.50 9.39 7.85 -11.63 -0.09 9.30 16 11 O -0.53 -11.19 16.14 5.49 0.09 -11.10 16 12 N -0.67 -13.69 5.06 -55.40 -0.28 -13.97 16 13 C 0.26 6.32 2.42 -69.09 -0.17 6.15 16 14 H 0.06 1.70 7.51 -51.93 -0.39 1.31 16 15 C -0.14 -3.31 9.36 37.15 0.35 -2.97 16 16 C -0.54 -13.94 8.65 -34.44 -0.30 -14.23 16 17 H 0.06 1.61 7.73 -52.49 -0.41 1.21 16 18 C 0.07 1.84 5.20 -17.82 -0.09 1.74 16 19 N -0.88 -24.18 12.15 55.43 0.67 -23.51 16 20 Si 0.90 20.22 29.55 -169.99 -5.02 15.19 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 24 C -0.08 -0.92 8.67 -39.26 -0.34 -1.26 16 25 C -0.12 -1.20 9.65 -39.68 -0.38 -1.59 16 26 C -0.04 -0.38 5.92 -104.11 -0.62 -1.00 16 27 C -0.12 -1.09 8.72 36.01 0.31 -0.78 16 28 H 0.08 0.41 5.64 -51.93 -0.29 0.11 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 0.98 5.97 -52.49 -0.31 0.66 16 32 H 0.42 4.61 8.30 -40.82 -0.34 4.27 16 33 H 0.40 7.67 7.99 -40.82 -0.33 7.35 16 34 H 0.08 1.96 6.84 -51.93 -0.36 1.60 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.14 1.79 6.52 -52.49 -0.34 1.45 16 39 H 0.13 1.08 8.05 -52.49 -0.42 0.66 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.46 8.03 -51.93 -0.42 0.04 16 42 H 0.09 0.92 5.86 -51.93 -0.30 0.61 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -30.34 358.18 -6.97 -37.31 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.16 Total: 9.23 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -2.77 Total: 3.47 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.34 Total: -45.73 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.24 Total: -24.86 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.34 -6.97 -37.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580568946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.017 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds