Wall clock time and date at job start Tue Mar 31 2020 12:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21253 * 119.99912 * 2 1 4 4 C 1.47183 * 119.99593 * 179.97438 * 2 1 3 5 5 C 1.39754 * 120.14024 * 354.43178 * 4 2 1 6 6 C 1.38584 * 119.74660 * 180.02562 * 5 4 2 7 7 N 1.39764 * 119.99349 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00061 * 141.25146 * 7 6 5 9 9 O 1.21381 * 120.00027 * 4.52615 * 8 7 6 10 10 C 1.49359 * 119.99918 * 184.52554 * 8 7 6 11 11 O 1.21354 * 119.99738 * 0.02562 * 10 8 7 12 12 N 1.34781 * 119.99930 * 179.72774 * 10 8 7 13 13 C 1.46495 * 120.00008 * 180.27610 * 12 10 8 14 14 H 1.08998 * 109.47220 * 34.99854 * 13 12 10 15 15 C 1.52995 * 109.47183 * 274.99800 * 13 12 10 16 16 C 1.50699 * 109.47089 * 154.99550 * 13 12 10 17 17 H 1.07995 * 120.00033 * 6.22282 * 16 13 12 18 18 C 1.37882 * 119.99797 * 186.21581 * 16 13 12 19 19 N 1.31514 * 119.99874 * 8.26137 * 18 16 13 20 20 Si 1.86803 * 119.99856 * 188.26013 * 18 16 13 21 21 H 1.48503 * 109.46493 * 84.99442 * 20 18 16 22 22 H 1.48497 * 109.46971 * 204.99055 * 20 18 16 23 23 H 1.48494 * 109.46968 * 324.99895 * 20 18 16 24 24 C 1.39091 * 120.01805 * 0.27347 * 6 5 4 25 25 C 1.38242 * 120.27006 * 359.45237 * 24 6 5 26 26 C 1.37965 * 120.25892 * 0.54738 * 25 24 6 27 27 C 1.50699 * 120.01181 * 179.70337 * 26 25 24 28 28 H 1.09001 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46831 * 300.00608 * 1 2 3 30 30 H 1.09006 * 109.46659 * 60.00009 * 1 2 3 31 31 H 1.07998 * 120.12810 * 0.04686 * 5 4 2 32 32 H 0.96992 * 119.99860 * 321.25486 * 7 6 5 33 33 H 0.97006 * 119.99701 * 0.27124 * 12 10 8 34 34 H 1.08997 * 109.47614 * 183.54597 * 15 13 12 35 35 H 1.08999 * 109.46977 * 303.54729 * 15 13 12 36 36 H 1.09005 * 109.47137 * 63.54271 * 15 13 12 37 37 H 0.96998 * 119.99745 * 179.97438 * 19 18 16 38 38 H 1.08000 * 119.86472 * 179.70394 * 24 6 5 39 39 H 1.07995 * 119.86843 * 180.25154 * 25 24 6 40 40 H 1.09001 * 109.46777 * 263.15844 * 27 26 25 41 41 H 1.09002 * 109.46922 * 23.15939 * 27 26 25 42 42 H 1.09001 * 109.46679 * 143.15922 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5520 -2.4838 0.1184 6 6 2.2530 -3.6792 0.1185 7 7 1.5672 -4.8914 0.2355 8 6 1.9652 -5.9625 -0.4791 9 8 2.9673 -5.8988 -1.1610 10 6 1.1732 -7.2279 -0.4318 11 8 0.1711 -7.2914 0.2497 12 7 1.5682 -8.2974 -1.1507 13 6 0.7880 -9.5366 -1.1091 14 1 -0.2716 -9.2962 -1.0228 15 6 1.2214 -10.3718 0.0974 16 6 1.0236 -10.3212 -2.3739 17 1 1.7625 -9.9869 -3.0870 18 6 0.2959 -11.4661 -2.6207 19 7 -0.7122 -11.7857 -1.8388 20 14 0.7418 -12.5630 -4.0654 21 1 1.8162 -13.5042 -3.6591 22 1 -0.4552 -13.3321 -4.4909 23 1 1.2189 -11.7248 -5.1945 24 6 3.6395 -3.6728 0.0075 25 6 4.3232 -2.4775 -0.1148 26 6 3.6367 -1.2808 -0.1162 27 6 4.3882 0.0192 -0.2431 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.4758 -2.4865 0.2086 32 1 0.8048 -4.9617 0.8309 33 1 2.3690 -8.2464 -1.6957 34 1 0.6862 -11.3213 0.0931 35 1 2.2938 -10.5590 0.0433 36 1 0.9929 -9.8300 1.0153 37 1 -1.2244 -12.5909 -2.0126 38 1 4.1837 -4.6056 0.0127 39 1 5.3994 -2.4803 -0.2047 40 1 4.5488 0.4442 0.7477 41 1 5.3510 -0.1628 -0.7207 42 1 3.8085 0.7164 -0.8480 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580568946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:56 Heat of formation + Delta-G solvation = -99.981128 kcal Electronic energy + Delta-G solvation = -25539.052020 eV Core-core repulsion = 21676.537787 eV Total energy + Delta-G solvation = -3862.514233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.16669 -41.14707 -39.99884 -38.89862 -37.05694 -36.15284 -34.34205 -33.35464 -32.49374 -31.17442 -30.24796 -28.00511 -27.33148 -25.79150 -24.95342 -23.08209 -22.37652 -21.48229 -20.66393 -20.19403 -18.61386 -18.16123 -17.48423 -17.22345 -17.04261 -16.77854 -16.42584 -16.14817 -16.13385 -15.77635 -15.31800 -15.05906 -14.93569 -14.70849 -14.42134 -14.37766 -13.84053 -13.44126 -13.18781 -13.12571 -13.04475 -13.01289 -12.98099 -12.82255 -12.74272 -12.56547 -12.40291 -12.37604 -12.13387 -11.39329 -11.20191 -10.74516 -10.61230 -10.45257 -10.07185 -9.99750 -9.26681 -8.23465 -6.37094 -0.41724 -0.04821 0.49877 1.24564 1.40961 1.45717 1.47212 1.56456 2.12503 2.38851 2.66181 2.70740 3.07812 3.09623 3.46327 3.69401 3.88469 3.94248 4.16893 4.27441 4.31772 4.52467 4.65905 4.68483 4.69757 4.80448 4.84934 4.87417 4.94732 4.97325 5.06993 5.16076 5.23930 5.28289 5.28685 5.41935 5.51550 5.58064 5.69572 5.79595 5.94381 5.97790 6.50988 6.53253 6.66354 6.76627 7.06782 7.34263 8.85369 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.002365 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.778004 B =11834.139522 C =12124.878665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.398 3.602 3 O -0.483 6.483 4 C -0.172 4.172 5 C -0.076 4.076 6 C 0.106 3.894 7 N -0.634 5.634 8 C 0.520 3.480 9 O -0.519 6.519 10 C 0.496 3.504 11 O -0.555 6.555 12 N -0.670 5.670 13 C 0.267 3.733 14 H 0.020 0.980 15 C -0.131 4.131 16 C -0.553 4.553 17 H 0.071 0.929 18 C 0.022 3.978 19 N -0.914 5.914 20 Si 0.968 3.032 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.089 4.089 25 C -0.118 4.118 26 C -0.044 4.044 27 C -0.117 4.117 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.432 0.568 33 H 0.410 0.590 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.026 0.974 37 H 0.268 0.732 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 21.213 4.935 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.279 3.721 3 O -0.362 6.362 4 C -0.173 4.173 5 C -0.095 4.095 6 C 0.013 3.987 7 N -0.282 5.282 8 C 0.302 3.698 9 O -0.394 6.394 10 C 0.276 3.724 11 O -0.435 6.435 12 N -0.320 5.320 13 C 0.164 3.836 14 H 0.038 0.962 15 C -0.190 4.190 16 C -0.591 4.591 17 H 0.089 0.911 18 C -0.179 4.179 19 N -0.551 5.551 20 Si 0.792 3.208 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.109 4.109 25 C -0.136 4.136 26 C -0.045 4.045 27 C -0.173 4.173 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.186 0.814 32 H 0.272 0.728 33 H 0.246 0.754 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.148 0.852 39 H 0.170 0.830 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.097 21.530 4.936 22.915 hybrid contribution -0.051 -1.166 -0.546 1.289 sum 6.047 20.364 4.389 21.691 Atomic orbital electron populations 1.22297 0.90967 1.06350 1.06010 1.22816 0.93031 0.86567 0.69702 1.90493 1.72336 1.35199 1.38148 1.20346 0.94073 0.94887 1.08025 1.21497 1.01374 0.89106 0.97568 1.17759 0.91574 0.84898 1.04486 1.42984 1.33953 1.07864 1.43427 1.20208 0.84912 0.84878 0.79780 1.90746 1.25058 1.83218 1.40359 1.20099 0.85539 0.85067 0.81700 1.90719 1.26643 1.84033 1.42080 1.46260 1.29126 1.12333 1.44253 1.18622 0.90678 0.79304 0.94981 0.96192 1.21869 1.00066 1.00623 0.96440 1.21464 1.22700 1.09781 1.05204 0.91132 1.25713 0.93844 0.98886 0.99461 1.70085 1.18710 1.25924 1.40428 0.85423 0.77750 0.78622 0.78980 1.19533 1.21068 1.19108 1.21563 0.92889 0.99678 0.96818 1.21151 1.01340 0.90329 1.00826 1.20515 0.93004 0.96551 0.94404 1.21043 0.99736 0.93301 1.03174 0.88244 0.87380 0.87776 0.81437 0.72789 0.75399 0.92538 0.93410 0.95494 0.92323 0.85160 0.83041 0.90503 0.90556 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 10.19 71.24 0.73 -1.12 16 2 C 0.40 6.64 7.16 28.04 0.20 6.84 16 3 O -0.48 -10.65 14.07 -2.95 -0.04 -10.69 16 4 C -0.17 -3.11 5.87 -20.17 -0.12 -3.23 16 5 C -0.08 -1.28 9.35 22.72 0.21 -1.06 16 6 C 0.11 2.30 6.21 38.16 0.24 2.54 16 7 N -0.63 -15.10 5.31 -304.94 -1.62 -16.72 16 8 C 0.52 16.10 7.71 87.24 0.67 16.77 16 9 O -0.52 -17.33 14.16 -3.34 -0.05 -17.38 16 10 C 0.50 18.79 7.85 87.24 0.68 19.48 16 11 O -0.56 -23.39 16.14 -3.26 -0.05 -23.44 16 12 N -0.67 -27.63 5.06 -447.55 -2.27 -29.89 16 13 C 0.27 13.18 2.42 44.24 0.11 13.29 16 14 H 0.02 1.16 7.51 -2.39 -0.02 1.14 16 15 C -0.13 -6.15 9.36 71.98 0.67 -5.47 16 16 C -0.55 -28.65 8.65 25.60 0.22 -28.42 16 17 H 0.07 3.49 7.73 -2.91 -0.02 3.46 16 18 C 0.02 1.16 5.20 84.66 0.44 1.60 16 19 N -0.91 -50.92 12.15 21.45 0.26 -50.66 16 20 Si 0.97 41.19 29.55 68.60 2.03 43.22 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 C -0.09 -2.02 8.67 22.48 0.19 -1.83 16 25 C -0.12 -2.25 9.65 22.21 0.21 -2.03 16 26 C -0.04 -0.84 5.92 -19.53 -0.12 -0.95 16 27 C -0.12 -1.97 8.72 71.24 0.62 -1.34 16 28 H 0.10 0.61 5.64 -2.39 -0.01 0.59 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.17 1.78 5.97 -2.91 -0.02 1.76 16 32 H 0.43 8.76 8.30 -92.71 -0.77 7.99 16 33 H 0.41 15.56 7.99 -92.70 -0.74 14.82 16 34 H 0.06 2.88 6.84 -2.39 -0.02 2.86 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.13 3.24 6.52 -2.91 -0.02 3.22 16 39 H 0.15 2.20 8.05 -2.91 -0.02 2.18 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.02 8.03 -2.39 -0.02 1.00 16 42 H 0.08 1.54 5.86 -2.39 -0.01 1.53 16 Total: -1.00 -65.49 358.18 2.81 -62.68 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.42 Total: 27.83 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 4.97 Total: 15.05 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -3.62 Total: -97.28 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.14 Total: -51.50 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -65.49 2.81 -62.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580568946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.301 kcal (2) G-P(sol) polarization free energy of solvation -65.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds