Wall clock time and date at job start Tue Mar 31 2020 12:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99918 * 2 1 4 4 H 1.48501 * 109.46610 * 270.00078 * 3 2 1 5 5 H 1.48500 * 109.46879 * 29.99847 * 3 2 1 6 6 H 1.48496 * 109.47205 * 149.99973 * 3 2 1 7 7 C 1.37878 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00211 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99837 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46690 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.46553 * 179.97438 * 10 9 7 12 12 C 1.35904 * 116.99524 * 179.97438 * 11 10 9 13 13 C 1.38800 * 120.02165 * 359.97438 * 12 11 10 14 14 C 1.38170 * 120.08714 * 179.97438 * 13 12 11 15 15 C 1.38169 * 120.12370 * 359.76887 * 14 13 12 16 16 C 1.38888 * 120.03587 * 0.50512 * 15 14 13 17 17 N 1.39920 * 120.03968 * 179.74512 * 16 15 14 18 18 C 1.34776 * 119.99762 * 214.81596 * 17 16 15 19 19 O 1.21293 * 120.00469 * 355.37137 * 18 17 16 20 20 C 1.50708 * 119.99861 * 175.37033 * 18 17 16 21 21 H 1.09004 * 110.53481 * 57.39175 * 20 18 17 22 22 C 1.54633 * 110.48522 * 179.97438 * 20 18 17 23 23 C 1.54483 * 101.79337 * 93.90047 * 22 20 18 24 24 N 1.46757 * 105.47486 * 25.39794 * 23 22 20 25 25 C 1.34415 * 111.30455 * 342.98212 * 24 23 22 26 26 O 1.21274 * 124.94732 * 180.41756 * 25 24 23 27 27 C 1.38587 * 120.01876 * 179.97438 * 12 11 10 28 28 H 0.97004 * 120.00368 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47384 * 60.00364 * 9 7 2 30 30 H 1.08996 * 109.47194 * 299.99624 * 9 7 2 31 31 H 1.08996 * 109.47115 * 60.00210 * 10 9 7 32 32 H 1.08996 * 109.47214 * 299.99880 * 10 9 7 33 33 H 1.08005 * 119.96162 * 0.02562 * 13 12 11 34 34 H 1.08002 * 119.94030 * 180.02562 * 14 13 12 35 35 H 1.07997 * 119.97978 * 180.25170 * 15 14 13 36 36 H 0.96994 * 120.00834 * 34.81848 * 17 16 15 37 37 H 1.08998 * 110.96887 * 335.76794 * 22 20 18 38 38 H 1.08998 * 110.96999 * 212.03860 * 22 20 18 39 39 H 1.09006 * 110.24411 * 144.39576 * 23 22 20 40 40 H 1.08999 * 110.24792 * 266.30400 * 23 22 20 41 41 H 0.97008 * 124.34928 * 162.95718 * 24 23 22 42 42 H 1.07999 * 120.06413 * 359.97116 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0023 11 8 5.4506 -2.6364 0.0022 12 6 6.0676 -3.8473 0.0037 13 6 5.3121 -5.0116 0.0058 14 6 5.9379 -6.2435 0.0068 15 6 7.3175 -6.3203 0.0009 16 6 8.0785 -5.1585 0.0046 17 7 9.4755 -5.2363 0.0041 18 6 10.2017 -4.3192 0.6734 19 8 9.6499 -3.3794 1.2058 20 6 11.6996 -4.4613 0.7604 21 1 12.1385 -4.5004 -0.2366 22 6 12.3076 -3.2949 1.5735 23 6 12.3757 -3.9012 2.9927 24 7 12.4489 -5.3536 2.7950 25 6 12.0691 -5.6970 1.5522 26 8 12.0287 -6.8320 1.1268 27 6 7.4515 -3.9202 0.0033 28 1 -0.4851 0.8401 -0.0004 29 1 3.8746 -0.6799 0.8912 30 1 3.8752 -0.6804 -0.8888 31 1 3.6586 -3.1509 -0.8875 32 1 3.6579 -3.1497 0.8924 33 1 4.2335 -4.9548 0.0058 34 1 5.3477 -7.1480 0.0080 35 1 7.8042 -7.2844 -0.0024 36 1 9.9215 -5.9501 -0.4779 37 1 11.6541 -2.4228 1.5529 38 1 13.3032 -3.0426 1.2088 39 1 13.2657 -3.5460 3.5123 40 1 11.4807 -3.6407 3.5576 41 1 12.7351 -5.9847 3.4739 42 1 8.0410 -3.0153 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596848460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:17 Heat of formation + Delta-G solvation = -81.643707 kcal Electronic energy + Delta-G solvation = -25601.867785 eV Core-core repulsion = 21740.148723 eV Total energy + Delta-G solvation = -3861.719062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58256 -40.15135 -39.11475 -37.39662 -36.69419 -34.69767 -33.31239 -32.19649 -31.10883 -29.92311 -29.28223 -28.09990 -25.25955 -23.85166 -22.58687 -22.08501 -21.69382 -20.56112 -20.13302 -18.54231 -18.08823 -17.86017 -16.78192 -16.26047 -16.13709 -15.81280 -15.59556 -15.43168 -15.18981 -14.81487 -14.27543 -14.17532 -14.10685 -13.89171 -13.53086 -13.20395 -13.13427 -12.88609 -12.56430 -12.09846 -11.95772 -11.85531 -11.80037 -11.57295 -10.98235 -10.90180 -10.53068 -10.38711 -10.18540 -10.05513 -9.93195 -9.78983 -9.65214 -9.33006 -8.61297 -8.35016 -7.88486 -6.12411 -4.13215 1.25451 1.58652 1.79391 2.26329 2.67119 2.87166 3.29983 3.37097 3.43514 3.68502 3.73325 3.82952 3.92805 4.20252 4.40549 4.44103 4.56192 4.89291 4.97088 5.04803 5.18274 5.21868 5.31969 5.34322 5.40860 5.50701 5.62965 5.79940 5.93988 5.94333 6.14955 6.21997 6.31007 6.39714 6.43079 6.50506 6.64706 6.86683 7.08562 7.12081 7.25237 7.61959 7.63691 7.73909 7.93268 8.39871 8.88277 9.48018 11.00065 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.002540 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.518705 B =11019.267145 C =12135.235926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.072 3.928 11 O -0.316 6.316 12 C 0.161 3.839 13 C -0.222 4.222 14 C -0.061 4.061 15 C -0.190 4.190 16 C 0.172 3.828 17 N -0.663 5.663 18 C 0.528 3.472 19 O -0.500 6.500 20 C -0.150 4.150 21 H 0.137 0.863 22 C -0.120 4.120 23 C 0.097 3.903 24 N -0.725 5.725 25 C 0.531 3.469 26 O -0.522 6.522 27 C -0.162 4.162 28 H 0.266 0.734 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.416 0.584 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.415 0.585 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.081 -11.733 2.917 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.047 4.047 10 C -0.002 4.002 11 O -0.229 6.229 12 C 0.113 3.887 13 C -0.241 4.241 14 C -0.080 4.080 15 C -0.211 4.211 16 C 0.078 3.922 17 N -0.308 5.308 18 C 0.313 3.687 19 O -0.374 6.374 20 C -0.175 4.175 21 H 0.155 0.845 22 C -0.158 4.158 23 C -0.028 4.028 24 N -0.380 5.380 25 C 0.315 3.685 26 O -0.398 6.398 27 C -0.183 4.183 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.253 0.747 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.254 0.746 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 27.584 -11.232 3.023 29.936 hybrid contribution 0.491 0.062 0.067 0.499 sum 28.075 -11.170 3.090 30.373 Atomic orbital electron populations 1.69891 1.06275 1.27205 1.50247 1.24931 0.94758 0.99211 0.94110 0.86760 0.80504 0.83269 0.78772 1.20058 1.21193 1.18690 1.20840 0.88323 0.94934 1.52310 0.90734 1.19591 0.96887 0.90251 0.97939 1.23102 0.74548 1.01986 1.00564 1.86137 1.24028 1.25749 1.86995 1.18915 0.91688 0.85279 0.92798 1.21430 1.00933 0.92236 1.09484 1.20691 0.93515 0.97181 0.96618 1.20690 0.94019 0.96575 1.09769 1.17294 0.81549 0.93454 0.99867 1.43379 1.04968 1.30854 1.51578 1.19880 0.88046 0.82453 0.78303 1.90785 1.71488 1.30289 1.44797 1.22177 0.94450 0.97278 1.03593 0.84524 1.22647 1.02626 0.97725 0.92823 1.22202 1.03371 0.79030 0.98166 1.46154 1.67853 1.09771 1.14244 1.20260 0.76291 0.89089 0.82846 1.90794 1.53703 1.22086 1.73222 1.20368 0.92019 0.97802 1.08091 0.92460 0.95372 0.95818 0.92433 0.92420 0.84849 0.85503 0.85916 0.74715 0.86879 0.88868 0.89532 0.90069 0.74570 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.53 -14.94 9.66 -34.44 -0.33 -15.27 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 10 C 0.07 1.51 4.68 37.16 0.17 1.69 16 11 O -0.32 -6.46 10.13 -19.44 -0.20 -6.65 16 12 C 0.16 2.85 6.68 -39.24 -0.26 2.59 16 13 C -0.22 -3.45 9.03 -39.40 -0.36 -3.80 16 14 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 15 C -0.19 -2.34 9.96 -39.37 -0.39 -2.74 16 16 C 0.17 2.33 6.30 -83.72 -0.53 1.81 16 17 N -0.66 -7.14 5.31 -9.87 -0.05 -7.19 16 18 C 0.53 5.71 7.00 -10.98 -0.08 5.64 16 19 O -0.50 -7.04 12.91 5.55 0.07 -6.97 16 20 C -0.15 -1.07 3.33 -91.75 -0.31 -1.38 16 21 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 22 C -0.12 -0.62 6.50 -25.09 -0.16 -0.78 16 23 C 0.10 0.46 7.78 -3.12 -0.02 0.43 16 24 N -0.72 -4.47 6.24 -59.18 -0.37 -4.84 16 25 C 0.53 4.58 7.72 -10.83 -0.08 4.50 16 26 O -0.52 -6.14 18.03 5.56 0.10 -6.04 16 27 C -0.16 -2.65 8.63 -39.25 -0.34 -2.99 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 30 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 31 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 32 H 0.06 1.17 7.66 -51.93 -0.40 0.77 16 33 H 0.13 2.03 6.29 -52.48 -0.33 1.70 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.42 3.49 8.82 -40.82 -0.36 3.13 16 37 H 0.11 0.73 6.96 -51.93 -0.36 0.37 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.42 1.93 8.96 -40.82 -0.37 1.56 16 42 H 0.14 2.48 6.22 -52.49 -0.33 2.15 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -35.25 354.34 -7.74 -42.99 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.43 Total: 2.74 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -3.31 Total: -9.84 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.35 Total: -38.67 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.03 Total: -19.66 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.25 -7.74 -42.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596848460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.652 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds