Wall clock time and date at job start Tue Mar 31 2020 12:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99918 * 2 1 4 4 H 1.48501 * 109.46610 * 270.00078 * 3 2 1 5 5 H 1.48500 * 109.46879 * 29.99847 * 3 2 1 6 6 H 1.48496 * 109.47205 * 149.99973 * 3 2 1 7 7 C 1.37878 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00211 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99837 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46690 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.46553 * 179.97438 * 10 9 7 12 12 C 1.35904 * 116.99524 * 179.97438 * 11 10 9 13 13 C 1.38800 * 120.02165 * 359.97438 * 12 11 10 14 14 C 1.38170 * 120.08714 * 179.97438 * 13 12 11 15 15 C 1.38169 * 120.12370 * 359.76887 * 14 13 12 16 16 C 1.38888 * 120.03587 * 0.50512 * 15 14 13 17 17 N 1.39920 * 120.03968 * 179.74512 * 16 15 14 18 18 C 1.34776 * 119.99762 * 214.81596 * 17 16 15 19 19 O 1.21293 * 120.00469 * 355.37137 * 18 17 16 20 20 C 1.50708 * 119.99861 * 175.37033 * 18 17 16 21 21 H 1.09004 * 110.53481 * 57.39175 * 20 18 17 22 22 C 1.54633 * 110.48522 * 179.97438 * 20 18 17 23 23 C 1.54483 * 101.79337 * 93.90047 * 22 20 18 24 24 N 1.46757 * 105.47486 * 25.39794 * 23 22 20 25 25 C 1.34415 * 111.30455 * 342.98212 * 24 23 22 26 26 O 1.21274 * 124.94732 * 180.41756 * 25 24 23 27 27 C 1.38587 * 120.01876 * 179.97438 * 12 11 10 28 28 H 0.97004 * 120.00368 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47384 * 60.00364 * 9 7 2 30 30 H 1.08996 * 109.47194 * 299.99624 * 9 7 2 31 31 H 1.08996 * 109.47115 * 60.00210 * 10 9 7 32 32 H 1.08996 * 109.47214 * 299.99880 * 10 9 7 33 33 H 1.08005 * 119.96162 * 0.02562 * 13 12 11 34 34 H 1.08002 * 119.94030 * 180.02562 * 14 13 12 35 35 H 1.07997 * 119.97978 * 180.25170 * 15 14 13 36 36 H 0.96994 * 120.00834 * 34.81848 * 17 16 15 37 37 H 1.08998 * 110.96887 * 335.76794 * 22 20 18 38 38 H 1.08998 * 110.96999 * 212.03860 * 22 20 18 39 39 H 1.09006 * 110.24411 * 144.39576 * 23 22 20 40 40 H 1.08999 * 110.24792 * 266.30400 * 23 22 20 41 41 H 0.97008 * 124.34928 * 162.95718 * 24 23 22 42 42 H 1.07999 * 120.06413 * 359.97116 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0023 11 8 5.4506 -2.6364 0.0022 12 6 6.0676 -3.8473 0.0037 13 6 5.3121 -5.0116 0.0058 14 6 5.9379 -6.2435 0.0068 15 6 7.3175 -6.3203 0.0009 16 6 8.0785 -5.1585 0.0046 17 7 9.4755 -5.2363 0.0041 18 6 10.2017 -4.3192 0.6734 19 8 9.6499 -3.3794 1.2058 20 6 11.6996 -4.4613 0.7604 21 1 12.1385 -4.5004 -0.2366 22 6 12.3076 -3.2949 1.5735 23 6 12.3757 -3.9012 2.9927 24 7 12.4489 -5.3536 2.7950 25 6 12.0691 -5.6970 1.5522 26 8 12.0287 -6.8320 1.1268 27 6 7.4515 -3.9202 0.0033 28 1 -0.4851 0.8401 -0.0004 29 1 3.8746 -0.6799 0.8912 30 1 3.8752 -0.6804 -0.8888 31 1 3.6586 -3.1509 -0.8875 32 1 3.6579 -3.1497 0.8924 33 1 4.2335 -4.9548 0.0058 34 1 5.3477 -7.1480 0.0080 35 1 7.8042 -7.2844 -0.0024 36 1 9.9215 -5.9501 -0.4779 37 1 11.6541 -2.4228 1.5529 38 1 13.3032 -3.0426 1.2088 39 1 13.2657 -3.5460 3.5123 40 1 11.4807 -3.6407 3.5576 41 1 12.7351 -5.9847 3.4739 42 1 8.0410 -3.0153 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596848460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:16 Heat of formation + Delta-G solvation = -108.063435 kcal Electronic energy + Delta-G solvation = -25603.013431 eV Core-core repulsion = 21740.148723 eV Total energy + Delta-G solvation = -3862.864708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.33900 -41.18779 -40.18868 -38.54784 -37.39695 -35.79137 -35.32897 -32.95618 -32.79872 -31.15357 -30.39050 -28.73648 -27.11666 -24.81259 -23.57825 -23.20937 -22.60702 -21.93405 -21.05925 -19.78902 -18.98087 -18.69205 -18.46794 -17.29813 -17.07134 -16.92780 -16.84354 -16.78689 -16.34648 -15.98260 -15.63744 -14.92492 -14.89556 -14.77580 -14.61814 -14.50848 -14.40054 -14.33641 -13.68738 -13.45301 -13.35018 -12.79032 -12.68108 -12.52582 -12.42188 -12.33420 -12.13125 -11.86713 -11.70997 -11.49232 -11.30833 -11.19708 -10.96241 -10.82547 -10.17589 -9.49573 -9.08714 -8.35899 -6.42496 0.15671 0.43334 1.05545 1.34898 1.36482 1.44714 1.49570 1.86008 2.31418 2.32368 2.37590 2.76028 2.98958 3.15438 3.32167 3.55784 3.87240 3.95838 4.12528 4.16602 4.16677 4.20352 4.21167 4.37282 4.46357 4.52501 4.62660 4.69749 4.74215 5.00650 5.08479 5.08941 5.20106 5.24447 5.28111 5.35595 5.44994 5.51347 5.65422 5.83136 5.87325 6.15116 6.22035 6.48560 6.62789 6.89639 7.06083 7.22696 8.79690 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.002540 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.518705 B =11019.267145 C =12135.235926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.536 4.536 8 H 0.044 0.956 9 C -0.007 4.007 10 C 0.086 3.914 11 O -0.336 6.336 12 C 0.127 3.873 13 C -0.232 4.232 14 C -0.054 4.054 15 C -0.177 4.177 16 C 0.173 3.827 17 N -0.656 5.656 18 C 0.524 3.476 19 O -0.536 6.536 20 C -0.143 4.143 21 H 0.164 0.836 22 C -0.117 4.117 23 C 0.094 3.906 24 N -0.716 5.716 25 C 0.526 3.474 26 O -0.558 6.558 27 C -0.177 4.177 28 H 0.270 0.730 29 H 0.025 0.975 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.429 0.571 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.422 0.578 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.013 -12.495 2.996 33.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.574 4.574 8 H 0.062 0.938 9 C -0.044 4.044 10 C 0.012 3.988 11 O -0.251 6.251 12 C 0.081 3.919 13 C -0.252 4.252 14 C -0.073 4.073 15 C -0.197 4.197 16 C 0.078 3.922 17 N -0.302 5.302 18 C 0.311 3.689 19 O -0.412 6.412 20 C -0.167 4.167 21 H 0.181 0.819 22 C -0.155 4.155 23 C -0.029 4.029 24 N -0.370 5.370 25 C 0.311 3.689 26 O -0.437 6.437 27 C -0.198 4.198 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.269 0.731 37 H 0.117 0.883 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.263 0.737 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 30.560 -12.016 3.115 32.985 hybrid contribution -0.363 0.157 0.081 0.403 sum 30.198 -11.859 3.196 32.600 Atomic orbital electron populations 1.70016 1.08012 1.28512 1.51517 1.25852 0.95622 1.03215 0.93654 0.85700 0.79352 0.78466 0.79450 1.18854 1.20306 1.17750 1.21091 0.90338 0.93985 1.51960 0.93760 1.19452 0.94523 0.92743 0.97706 1.22715 0.75578 0.99609 1.00917 1.86044 1.23057 1.27786 1.88175 1.19179 0.92341 0.84953 0.95450 1.21539 1.00860 0.92699 1.10061 1.21091 0.94134 0.97242 0.94785 1.21096 0.93856 0.97424 1.07340 1.17432 0.83030 0.92902 0.98792 1.43421 1.03916 1.31310 1.51575 1.20558 0.89549 0.81535 0.77237 1.90779 1.72578 1.31709 1.46160 1.22234 0.91561 0.97571 1.05370 0.81874 1.22723 1.03747 0.96310 0.92681 1.22344 1.04314 0.78049 0.98215 1.46214 1.66492 1.10670 1.13652 1.20457 0.76113 0.88818 0.83531 1.90773 1.55464 1.23371 1.74057 1.20346 0.91469 0.98538 1.09420 0.92054 0.95689 0.95553 0.91949 0.92293 0.85094 0.82086 0.82552 0.73139 0.88329 0.85687 0.86252 0.91513 0.73725 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 2 C 0.01 0.87 5.47 84.66 0.46 1.34 16 3 Si 0.95 44.98 27.47 68.60 1.88 46.86 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 7 C -0.54 -31.21 9.66 25.60 0.25 -30.96 16 8 H 0.04 2.76 7.99 -2.91 -0.02 2.74 16 9 C -0.01 -0.34 4.41 29.85 0.13 -0.20 16 10 C 0.09 3.71 4.68 71.98 0.34 4.05 16 11 O -0.34 -14.14 10.13 -92.46 -0.94 -15.08 16 12 C 0.13 4.59 6.68 22.49 0.15 4.74 16 13 C -0.23 -7.13 9.03 22.39 0.20 -6.93 16 14 C -0.05 -1.27 10.03 22.24 0.22 -1.04 16 15 C -0.18 -3.88 9.96 22.41 0.22 -3.66 16 16 C 0.17 4.49 6.30 38.14 0.24 4.73 16 17 N -0.66 -13.19 5.31 -303.54 -1.61 -14.81 16 18 C 0.52 10.85 7.00 87.66 0.61 11.47 16 19 O -0.54 -15.22 12.91 -3.07 -0.04 -15.26 16 20 C -0.14 -1.75 3.33 -11.52 -0.04 -1.79 16 21 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 22 C -0.12 -0.93 6.50 31.65 0.21 -0.72 16 23 C 0.09 0.68 7.78 86.83 0.68 1.36 16 24 N -0.72 -7.34 6.24 -459.75 -2.87 -10.21 16 25 C 0.53 8.08 7.72 87.92 0.68 8.76 16 26 O -0.56 -12.23 18.03 -3.01 -0.05 -12.28 16 27 C -0.18 -5.86 8.63 22.49 0.19 -5.67 16 28 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 29 H 0.02 1.25 7.20 -2.39 -0.02 1.23 16 30 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 31 H 0.06 2.57 7.66 -2.39 -0.02 2.55 16 32 H 0.06 2.47 7.66 -2.39 -0.02 2.45 16 33 H 0.13 4.00 6.29 -2.91 -0.02 3.98 16 34 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.43 6.29 8.82 -92.71 -0.82 5.47 16 37 H 0.10 1.16 6.96 -2.39 -0.02 1.15 16 38 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.42 3.09 8.96 -92.70 -0.83 2.26 16 42 H 0.13 4.59 6.22 -2.91 -0.02 4.57 16 Total: -1.00 -78.80 354.34 0.59 -78.21 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.63 Total: 15.37 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 4.55 Total: -14.53 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -4.18 Total: -83.29 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.03 Total: -42.62 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -78.80 0.59 -78.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596848460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.851 kcal (2) G-P(sol) polarization free energy of solvation -78.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds