Wall clock time and date at job start Tue Mar 31 2020 12:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47410 * 270.00131 * 3 2 1 5 5 H 1.48503 * 109.47046 * 30.00478 * 3 2 1 6 6 H 1.48502 * 109.47264 * 150.00212 * 3 2 1 7 7 C 1.37877 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00348 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00039 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47331 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47175 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00107 * 179.97438 * 11 10 9 13 13 C 1.38813 * 120.01811 * 0.02562 * 12 11 10 14 14 C 1.38171 * 120.08514 * 180.02562 * 13 12 11 15 15 C 1.38164 * 120.12342 * 359.97432 * 14 13 12 16 16 C 1.38892 * 120.04010 * 0.02562 * 15 14 13 17 17 N 1.39925 * 120.04149 * 179.97438 * 16 15 14 18 18 C 1.34775 * 119.99954 * 146.79475 * 17 16 15 19 19 O 1.21286 * 120.00128 * 354.73026 * 18 17 16 20 20 C 1.50698 * 119.99733 * 174.72536 * 18 17 16 21 21 C 1.53005 * 109.46904 * 179.97438 * 20 18 17 22 22 H 1.08999 * 112.98653 * 316.55700 * 21 20 18 23 23 C 1.53727 * 113.70452 * 185.00062 * 21 20 18 24 24 C 1.51507 * 86.60723 * 245.60177 * 23 21 20 25 25 O 1.21278 * 134.17722 * 179.97438 * 24 23 21 26 26 N 1.35831 * 91.65402 * 0.02562 * 24 23 21 27 27 C 1.38585 * 120.02232 * 180.23280 * 12 11 10 28 28 H 0.97002 * 120.00447 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47409 * 60.00033 * 9 7 2 30 30 H 1.09000 * 109.47331 * 300.00187 * 9 7 2 31 31 H 1.09003 * 109.46632 * 59.99820 * 10 9 7 32 32 H 1.09000 * 109.47280 * 300.00481 * 10 9 7 33 33 H 1.08004 * 119.95501 * 359.97438 * 13 12 11 34 34 H 1.08002 * 119.93771 * 179.97438 * 14 13 12 35 35 H 1.07998 * 119.97530 * 180.02562 * 15 14 13 36 36 H 0.97004 * 119.99551 * 326.79597 * 17 16 15 37 37 H 1.09001 * 109.46769 * 60.00697 * 20 18 17 38 38 H 1.09000 * 109.47612 * 300.00361 * 20 18 17 39 39 H 1.09001 * 113.69503 * 0.03203 * 23 21 20 40 40 H 1.09007 * 113.68734 * 131.17689 * 23 21 20 41 41 H 0.96994 * 132.38903 * 180.02562 * 26 24 23 42 42 H 1.07993 * 120.06259 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 8 5.4505 -2.6365 -0.0021 12 6 6.0675 -3.8474 -0.0017 13 6 5.3119 -5.0118 -0.0006 14 6 5.9378 -6.2437 0.0004 15 6 7.3173 -6.3205 -0.0001 16 6 8.0784 -5.1587 -0.0011 17 7 9.4755 -5.2364 -0.0011 18 6 10.2026 -4.2994 -0.6412 19 8 9.6467 -3.4435 -1.2966 20 6 11.7062 -4.3149 -0.5423 21 6 12.2827 -3.1538 -1.3550 22 1 11.8016 -3.0333 -2.3256 23 6 13.8186 -3.1485 -1.4214 24 6 13.7586 -1.8582 -0.6296 25 8 14.5937 -1.0917 -0.1983 26 7 12.4015 -1.8984 -0.5919 27 6 7.4514 -3.9204 0.0022 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 3.6578 -3.1505 -0.8907 32 1 3.6585 -3.1503 0.8892 33 1 4.2334 -4.9549 0.0002 34 1 5.3476 -7.1481 0.0016 35 1 7.8040 -7.2846 0.0003 36 1 9.9206 -5.9649 0.4596 37 1 12.0864 -5.2575 -0.9360 38 1 12.0029 -4.2110 0.5014 39 1 14.2833 -3.9731 -0.8808 40 1 14.2129 -3.0254 -2.4302 41 1 11.7404 -1.3066 -0.2000 42 1 8.0409 -3.0155 0.0052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596848694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:54 Heat of formation + Delta-G solvation = -59.621713 kcal Electronic energy + Delta-G solvation = -25036.577328 eV Core-core repulsion = 21175.813211 eV Total energy + Delta-G solvation = -3860.764117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33292 -40.50406 -39.36283 -37.45806 -36.90149 -34.77237 -33.34210 -31.65695 -31.13137 -29.77493 -29.20345 -28.44753 -25.29926 -24.01558 -22.75294 -21.99696 -20.96002 -20.22679 -20.00776 -18.59628 -17.94849 -17.35536 -16.97375 -16.74429 -16.43147 -15.95189 -15.81335 -15.54002 -15.43021 -15.10003 -14.37446 -14.11481 -13.86104 -13.46343 -13.31384 -13.23339 -12.99735 -12.72333 -12.56348 -12.24045 -12.19300 -11.95862 -11.90227 -11.58164 -10.99051 -10.93138 -10.48413 -10.42451 -10.23617 -10.10111 -9.98933 -9.82161 -9.65308 -9.35637 -8.63263 -8.39440 -7.95372 -6.14485 -4.15453 1.20511 1.51603 2.09664 2.24919 2.56913 2.83698 3.28772 3.35931 3.41741 3.55184 3.67248 3.84729 3.99582 4.01770 4.38341 4.38725 4.63944 4.77445 4.87676 4.89188 5.05453 5.06756 5.19789 5.25835 5.32763 5.44287 5.55264 5.73664 5.89058 5.90188 5.93151 6.13508 6.22180 6.38252 6.43599 6.52564 6.58346 6.81328 7.02376 7.08203 7.22026 7.61078 7.72668 7.87864 7.92942 8.37470 8.85915 9.45916 10.97941 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.002582 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.245985 B =10842.702695 C =12908.794826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.072 3.928 11 O -0.316 6.316 12 C 0.163 3.837 13 C -0.223 4.223 14 C -0.060 4.060 15 C -0.194 4.194 16 C 0.175 3.825 17 N -0.672 5.672 18 C 0.509 3.491 19 O -0.508 6.508 20 C -0.148 4.148 21 C 0.148 3.852 22 H 0.115 0.885 23 C -0.176 4.176 24 C 0.528 3.472 25 O -0.509 6.509 26 N -0.739 5.739 27 C -0.163 4.163 28 H 0.266 0.734 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.411 0.589 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.406 0.594 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.261 -16.698 -1.068 31.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C -0.002 4.002 11 O -0.229 6.229 12 C 0.116 3.884 13 C -0.242 4.242 14 C -0.079 4.079 15 C -0.215 4.215 16 C 0.082 3.918 17 N -0.317 5.317 18 C 0.296 3.704 19 O -0.382 6.382 20 C -0.189 4.189 21 C 0.043 3.957 22 H 0.133 0.867 23 C -0.216 4.216 24 C 0.312 3.688 25 O -0.382 6.382 26 N -0.400 5.400 27 C -0.184 4.184 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.247 0.753 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.247 0.753 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 26.286 -15.278 -1.299 30.431 hybrid contribution -0.214 0.532 0.429 0.716 sum 26.072 -14.745 -0.870 29.965 Atomic orbital electron populations 1.69888 1.06263 1.27233 1.50167 1.24926 0.94764 0.99211 0.94087 0.86760 0.80447 0.83269 0.78817 1.20027 1.21169 1.18763 1.20828 0.88282 0.94937 1.52407 0.90722 1.19592 0.96929 0.90215 0.97944 1.23111 0.74451 1.02038 1.00582 1.86140 1.24125 1.25771 1.86904 1.18913 0.91671 0.85318 0.92532 1.21431 1.00972 0.92230 1.09591 1.20696 0.93610 0.97153 0.96437 1.20634 0.94014 0.96397 1.10409 1.17264 0.81867 0.93355 0.99345 1.43475 1.04845 1.29268 1.54109 1.20733 0.89750 0.81276 0.78672 1.90821 1.72748 1.35984 1.38630 1.21993 0.91877 1.01141 1.03844 1.22161 0.95102 0.82750 0.95683 0.86722 1.24041 0.95688 0.98394 1.03524 1.22049 0.82112 0.86226 0.78363 1.90784 1.47993 1.48132 1.51321 1.48861 1.07850 1.26265 1.56988 1.20213 0.92022 0.97603 1.08565 0.92436 0.95419 0.95795 0.92404 0.92378 0.84845 0.85524 0.85996 0.75311 0.86465 0.87418 0.86661 0.86405 0.75320 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.53 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 10 C 0.07 1.49 4.68 37.16 0.17 1.67 16 11 O -0.32 -6.34 10.13 -19.43 -0.20 -6.54 16 12 C 0.16 2.78 6.68 -39.24 -0.26 2.52 16 13 C -0.22 -3.28 9.04 -39.39 -0.36 -3.64 16 14 C -0.06 -0.70 10.03 -39.63 -0.40 -1.10 16 15 C -0.19 -2.01 9.96 -39.37 -0.39 -2.40 16 16 C 0.18 2.05 6.28 -83.71 -0.53 1.52 16 17 N -0.67 -5.10 5.34 -9.88 -0.05 -5.15 16 18 C 0.51 4.18 7.57 -10.99 -0.08 4.10 16 19 O -0.51 -6.57 13.45 5.55 0.07 -6.50 16 20 C -0.15 -0.52 5.67 -27.88 -0.16 -0.68 16 21 C 0.15 0.75 4.07 -67.22 -0.27 0.48 16 22 H 0.12 0.67 7.67 -51.93 -0.40 0.27 16 23 C -0.18 -0.67 7.92 -27.15 -0.21 -0.89 16 24 C 0.53 4.65 9.85 -10.27 -0.10 4.55 16 25 O -0.51 -6.84 18.03 5.56 0.10 -6.74 16 26 N -0.74 -5.65 7.24 -58.01 -0.42 -6.07 16 27 C -0.16 -2.50 8.59 -39.25 -0.34 -2.84 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 30 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 31 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 32 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 33 H 0.13 1.94 6.29 -52.48 -0.33 1.61 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.41 1.45 8.82 -40.82 -0.36 1.09 16 37 H 0.12 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.12 0.17 8.01 -51.93 -0.42 -0.24 16 40 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.41 3.33 8.96 -40.82 -0.37 2.97 16 42 H 0.14 2.26 6.42 -52.49 -0.34 1.93 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -37.05 359.33 -7.93 -44.97 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.47 Total: 0.27 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -3.48 Total: -10.25 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.30 Total: -37.74 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.02 Total: -19.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.05 -7.93 -44.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596848694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.651 kcal (2) G-P(sol) polarization free energy of solvation -37.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds