Wall clock time and date at job start Tue Mar 31 2020 12:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47410 * 270.00131 * 3 2 1 5 5 H 1.48503 * 109.47046 * 30.00478 * 3 2 1 6 6 H 1.48502 * 109.47264 * 150.00212 * 3 2 1 7 7 C 1.37877 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00348 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00039 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47331 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47175 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00107 * 179.97438 * 11 10 9 13 13 C 1.38813 * 120.01811 * 0.02562 * 12 11 10 14 14 C 1.38171 * 120.08514 * 180.02562 * 13 12 11 15 15 C 1.38164 * 120.12342 * 359.97432 * 14 13 12 16 16 C 1.38892 * 120.04010 * 0.02562 * 15 14 13 17 17 N 1.39925 * 120.04149 * 179.97438 * 16 15 14 18 18 C 1.34775 * 119.99954 * 146.79475 * 17 16 15 19 19 O 1.21286 * 120.00128 * 354.73026 * 18 17 16 20 20 C 1.50698 * 119.99733 * 174.72536 * 18 17 16 21 21 C 1.53005 * 109.46904 * 179.97438 * 20 18 17 22 22 H 1.08999 * 112.98653 * 316.55700 * 21 20 18 23 23 C 1.53727 * 113.70452 * 185.00062 * 21 20 18 24 24 C 1.51507 * 86.60723 * 245.60177 * 23 21 20 25 25 O 1.21278 * 134.17722 * 179.97438 * 24 23 21 26 26 N 1.35831 * 91.65402 * 0.02562 * 24 23 21 27 27 C 1.38585 * 120.02232 * 180.23280 * 12 11 10 28 28 H 0.97002 * 120.00447 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47409 * 60.00033 * 9 7 2 30 30 H 1.09000 * 109.47331 * 300.00187 * 9 7 2 31 31 H 1.09003 * 109.46632 * 59.99820 * 10 9 7 32 32 H 1.09000 * 109.47280 * 300.00481 * 10 9 7 33 33 H 1.08004 * 119.95501 * 359.97438 * 13 12 11 34 34 H 1.08002 * 119.93771 * 179.97438 * 14 13 12 35 35 H 1.07998 * 119.97530 * 180.02562 * 15 14 13 36 36 H 0.97004 * 119.99551 * 326.79597 * 17 16 15 37 37 H 1.09001 * 109.46769 * 60.00697 * 20 18 17 38 38 H 1.09000 * 109.47612 * 300.00361 * 20 18 17 39 39 H 1.09001 * 113.69503 * 0.03203 * 23 21 20 40 40 H 1.09007 * 113.68734 * 131.17689 * 23 21 20 41 41 H 0.96994 * 132.38903 * 180.02562 * 26 24 23 42 42 H 1.07993 * 120.06259 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 8 5.4505 -2.6365 -0.0021 12 6 6.0675 -3.8474 -0.0017 13 6 5.3119 -5.0118 -0.0006 14 6 5.9378 -6.2437 0.0004 15 6 7.3173 -6.3205 -0.0001 16 6 8.0784 -5.1587 -0.0011 17 7 9.4755 -5.2364 -0.0011 18 6 10.2026 -4.2994 -0.6412 19 8 9.6467 -3.4435 -1.2966 20 6 11.7062 -4.3149 -0.5423 21 6 12.2827 -3.1538 -1.3550 22 1 11.8016 -3.0333 -2.3256 23 6 13.8186 -3.1485 -1.4214 24 6 13.7586 -1.8582 -0.6296 25 8 14.5937 -1.0917 -0.1983 26 7 12.4015 -1.8984 -0.5919 27 6 7.4514 -3.9204 0.0022 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 3.6578 -3.1505 -0.8907 32 1 3.6585 -3.1503 0.8892 33 1 4.2334 -4.9549 0.0002 34 1 5.3476 -7.1481 0.0016 35 1 7.8040 -7.2846 0.0003 36 1 9.9206 -5.9649 0.4596 37 1 12.0864 -5.2575 -0.9360 38 1 12.0029 -4.2110 0.5014 39 1 14.2833 -3.9731 -0.8808 40 1 14.2129 -3.0254 -2.4302 41 1 11.7404 -1.3066 -0.2000 42 1 8.0409 -3.0155 0.0052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596848694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:53 Heat of formation + Delta-G solvation = -89.160017 kcal Electronic energy + Delta-G solvation = -25037.858205 eV Core-core repulsion = 21175.813211 eV Total energy + Delta-G solvation = -3862.044994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.96563 -41.32919 -40.43868 -38.52812 -37.68104 -35.73244 -35.32029 -32.96254 -32.22949 -30.98025 -30.06564 -28.95763 -27.13152 -24.83370 -23.62437 -23.31292 -22.20020 -21.26666 -20.46268 -19.79101 -18.85739 -18.52792 -17.97327 -17.53417 -17.28210 -17.04216 -16.89226 -16.77928 -16.49881 -16.21415 -15.94703 -15.07620 -14.85732 -14.61770 -14.52582 -14.29795 -14.16103 -13.83537 -13.49578 -13.36561 -13.02192 -12.75778 -12.64246 -12.61648 -12.51161 -12.41675 -12.15503 -11.83401 -11.72888 -11.49665 -11.23848 -11.11520 -10.89302 -10.85063 -10.27753 -9.42287 -9.01785 -8.38407 -6.44760 0.23122 0.47713 1.32237 1.33460 1.46159 1.46193 1.58827 1.92239 2.29458 2.30959 2.39555 2.82661 2.96353 3.09886 3.50668 3.65939 3.89144 3.99046 4.15578 4.16890 4.18608 4.25082 4.34642 4.40997 4.56598 4.57974 4.61927 4.67321 4.77053 4.84976 5.06718 5.13517 5.24811 5.24905 5.32233 5.39504 5.42465 5.46010 5.53346 5.87878 5.91235 6.12863 6.42978 6.50053 6.60337 7.15492 7.20383 7.28553 8.77125 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.002582 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.245985 B =10842.702695 C =12908.794826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.016 3.984 3 Si 0.946 3.054 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.535 4.535 8 H 0.045 0.955 9 C -0.007 4.007 10 C 0.088 3.912 11 O -0.341 6.341 12 C 0.123 3.877 13 C -0.239 4.239 14 C -0.056 4.056 15 C -0.174 4.174 16 C 0.181 3.819 17 N -0.657 5.657 18 C 0.504 3.496 19 O -0.562 6.562 20 C -0.133 4.133 21 C 0.144 3.856 22 H 0.105 0.895 23 C -0.145 4.145 24 C 0.510 3.490 25 O -0.568 6.568 26 N -0.748 5.748 27 C -0.183 4.183 28 H 0.271 0.729 29 H 0.025 0.975 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.126 0.874 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.435 0.565 37 H 0.168 0.832 38 H 0.126 0.874 39 H 0.152 0.848 40 H 0.137 0.863 41 H 0.396 0.604 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.234 -19.845 -1.182 35.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.182 4.182 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.179 1.179 7 C -0.573 4.573 8 H 0.064 0.936 9 C -0.045 4.045 10 C 0.013 3.987 11 O -0.255 6.255 12 C 0.077 3.923 13 C -0.258 4.258 14 C -0.074 4.074 15 C -0.194 4.194 16 C 0.085 3.915 17 N -0.304 5.304 18 C 0.293 3.707 19 O -0.439 6.439 20 C -0.173 4.173 21 C 0.040 3.960 22 H 0.123 0.877 23 C -0.184 4.184 24 C 0.297 3.703 25 O -0.446 6.446 26 N -0.405 5.405 27 C -0.204 4.204 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.178 0.822 35 H 0.187 0.813 36 H 0.275 0.725 37 H 0.185 0.815 38 H 0.144 0.856 39 H 0.170 0.830 40 H 0.155 0.845 41 H 0.235 0.765 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 29.281 -18.509 -1.408 34.669 hybrid contribution -1.115 1.347 0.449 1.805 sum 28.165 -17.162 -0.960 32.996 Atomic orbital electron populations 1.70008 1.07923 1.28507 1.51453 1.25822 0.95618 1.03094 0.93691 0.85724 0.79348 0.78670 0.79360 1.19085 1.20156 1.17888 1.21080 0.90266 0.94012 1.51958 0.93621 1.19453 0.94624 0.92840 0.97557 1.22681 0.75655 0.99457 1.00858 1.86036 1.23033 1.28187 1.88292 1.19236 0.92518 0.84867 0.95704 1.21518 1.00680 0.92940 1.10680 1.21134 0.94722 0.96882 0.94695 1.21140 0.93449 0.97695 1.07077 1.17407 0.84015 0.92379 0.97655 1.43444 1.03124 1.30032 1.53842 1.21661 0.91669 0.80030 0.77311 1.90821 1.74106 1.37962 1.41011 1.22065 0.87738 1.02516 1.04946 1.22344 0.96289 0.82119 0.95284 0.87694 1.24029 0.94511 0.96038 1.03871 1.23038 0.81800 0.87383 0.78063 1.90740 1.49513 1.50556 1.53822 1.49232 1.07650 1.27102 1.56550 1.20228 0.91294 0.98656 1.10259 0.92024 0.95640 0.95946 0.92321 0.91999 0.85618 0.82162 0.81258 0.72464 0.81491 0.85605 0.83049 0.84536 0.76509 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 2 C 0.02 0.96 5.47 84.66 0.46 1.42 16 3 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.25 -11.82 6.54 99.48 0.65 -11.17 16 7 C -0.54 -31.26 9.66 25.60 0.25 -31.01 16 8 H 0.05 2.85 7.99 -2.91 -0.02 2.82 16 9 C -0.01 -0.36 4.41 29.85 0.13 -0.23 16 10 C 0.09 3.80 4.68 71.98 0.34 4.13 16 11 O -0.34 -14.37 10.13 -92.43 -0.94 -15.31 16 12 C 0.12 4.32 6.68 22.49 0.15 4.47 16 13 C -0.24 -7.00 9.04 22.39 0.20 -6.79 16 14 C -0.06 -1.14 10.03 22.24 0.22 -0.91 16 15 C -0.17 -2.86 9.96 22.41 0.22 -2.64 16 16 C 0.18 3.78 6.28 38.14 0.24 4.02 16 17 N -0.66 -7.65 5.34 -303.55 -1.62 -9.27 16 18 C 0.50 7.04 7.57 87.66 0.66 7.70 16 19 O -0.56 -14.43 13.45 -3.05 -0.04 -14.47 16 20 C -0.13 -0.37 5.67 29.85 0.17 -0.20 16 21 C 0.14 1.10 4.07 44.96 0.18 1.29 16 22 H 0.11 1.07 7.67 -2.39 -0.02 1.05 16 23 C -0.14 -0.60 7.92 30.36 0.24 -0.36 16 24 C 0.51 8.66 9.85 87.64 0.86 9.52 16 25 O -0.57 -15.74 18.03 -3.02 -0.05 -15.79 16 26 N -0.75 -11.14 7.24 -455.24 -3.29 -14.43 16 27 C -0.18 -5.70 8.59 22.49 0.19 -5.51 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 30 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 31 H 0.06 2.46 7.66 -2.39 -0.02 2.44 16 32 H 0.06 2.56 7.66 -2.39 -0.02 2.54 16 33 H 0.13 3.76 6.29 -2.91 -0.02 3.74 16 34 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.43 0.78 8.82 -92.71 -0.82 -0.04 16 37 H 0.17 -1.10 8.14 -2.39 -0.02 -1.12 16 38 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.15 -0.40 8.01 -2.39 -0.02 -0.42 16 40 H 0.14 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.40 6.91 8.96 -92.71 -0.83 6.08 16 42 H 0.12 4.03 6.42 -2.91 -0.02 4.01 16 Total: -1.00 -88.39 359.33 0.14 -88.26 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -0.63 Total: 6.99 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.53 Total: -15.10 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -4.62 Total: -81.93 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -1.03 Total: -45.57 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -88.39 0.14 -88.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596848694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.903 kcal (2) G-P(sol) polarization free energy of solvation -88.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds