Wall clock time and date at job start Tue Mar 31 2020 12:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00275 * 2 1 4 4 H 1.48493 * 109.47277 * 270.00383 * 3 2 1 5 5 H 1.48504 * 109.46795 * 30.00089 * 3 2 1 6 6 H 1.48497 * 109.46990 * 150.00092 * 3 2 1 7 7 C 1.37872 * 119.99459 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00066 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99914 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.49839 * 59.92675 * 9 7 2 11 11 C 1.53039 * 109.50029 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.52798 * 181.32171 * 11 9 7 13 13 C 1.53191 * 109.30997 * 298.61471 * 12 11 9 14 14 N 1.46931 * 108.76527 * 54.65907 * 13 12 11 15 15 C 1.34771 * 120.63154 * 126.36003 * 14 13 12 16 16 O 1.21284 * 120.00110 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99942 * 0.02562 * 15 14 13 18 18 C 1.50707 * 109.47135 * 180.02562 * 17 15 14 19 19 C 1.38254 * 119.99836 * 90.00125 * 18 17 15 20 20 C 1.38214 * 120.00040 * 179.97438 * 19 18 17 21 21 C 1.38255 * 119.99915 * 359.97438 * 20 19 18 22 22 C 1.38222 * 120.00055 * 0.02562 * 21 20 19 23 23 N 1.48012 * 120.00133 * 180.02562 * 22 21 20 24 24 O 1.21802 * 120.00021 * 359.97438 * 23 22 21 25 25 O 1.21792 * 120.00130 * 180.02562 * 23 22 21 26 26 C 1.38217 * 119.99876 * 269.72769 * 18 17 15 27 27 C 1.46919 * 118.73612 * 306.37786 * 14 13 12 28 28 H 0.97002 * 119.99471 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46050 * 301.33758 * 11 9 7 30 30 H 1.09004 * 109.46034 * 61.30973 * 11 9 7 31 31 H 1.08998 * 109.49692 * 58.57850 * 12 11 9 32 32 H 1.09003 * 109.49441 * 178.67822 * 12 11 9 33 33 H 1.08998 * 109.59857 * 294.86728 * 13 12 11 34 34 H 1.09003 * 109.70130 * 174.50265 * 13 12 11 35 35 H 1.08997 * 109.47722 * 299.99929 * 17 15 14 36 36 H 1.09001 * 109.47111 * 60.00343 * 17 15 14 37 37 H 1.07999 * 120.00227 * 0.02562 * 19 18 17 38 38 H 1.07997 * 120.00423 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.00334 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00104 * 0.02562 * 26 18 17 41 41 H 1.08997 * 109.59005 * 293.82473 * 27 14 13 42 42 H 1.09002 * 109.70256 * 173.46709 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 1 3.8750 -0.6799 0.8898 11 6 4.0222 -2.6368 -0.0001 12 6 5.5523 -2.6378 0.0338 13 6 6.0871 -1.9358 -1.2183 14 7 5.4866 -0.5974 -1.3027 15 6 6.2632 0.4973 -1.4238 16 8 5.7553 1.5966 -1.4921 17 6 7.7627 0.3556 -1.4744 18 6 8.3918 1.7183 -1.6105 19 6 8.7296 2.4396 -0.4805 20 6 9.3071 3.6892 -0.6052 21 6 9.5473 4.2175 -1.8601 22 6 9.2095 3.4963 -2.9898 23 7 9.4671 4.0617 -4.3332 24 8 9.9764 5.1626 -4.4432 25 8 9.1690 3.4264 -5.3287 26 6 8.6361 2.2445 -2.8650 27 6 4.0233 -0.4754 -1.2522 28 1 -0.4849 0.8401 0.0004 29 1 3.6392 -3.1578 0.8775 30 1 3.6786 -3.1436 -0.9019 31 1 5.8968 -2.1094 0.9227 32 1 5.9149 -3.6655 0.0574 33 1 5.8197 -2.5128 -2.1035 34 1 7.1716 -1.8462 -1.1544 35 1 8.1142 -0.1164 -0.5570 36 1 8.0407 -0.2604 -2.3296 37 1 8.5432 2.0264 0.4998 38 1 9.5714 4.2525 0.2774 39 1 9.9988 5.1936 -1.9577 40 1 8.3758 1.6793 -3.7477 41 1 3.5875 -0.9334 -2.1401 42 1 3.7436 0.5773 -1.2093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:13 Heat of formation + Delta-G solvation = -14.167271 kcal Electronic energy + Delta-G solvation = -26586.005187 eV Core-core repulsion = 22727.212122 eV Total energy + Delta-G solvation = -3858.793065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32604 -40.42055 -39.32757 -37.11873 -36.70433 -33.83665 -33.25593 -32.13869 -32.04279 -30.69840 -28.41767 -26.76198 -25.31155 -24.73560 -22.97319 -22.17585 -22.14885 -20.06538 -19.12471 -18.81371 -18.46324 -17.67412 -17.19175 -16.89727 -16.79687 -16.08070 -15.68129 -14.90799 -14.84921 -14.37339 -14.07237 -13.86065 -13.67595 -13.35067 -13.08606 -12.92844 -12.76944 -12.55049 -12.30254 -12.07982 -11.88713 -11.69130 -11.40722 -11.29932 -11.28013 -11.16279 -10.72368 -10.50980 -10.20288 -9.93982 -9.85887 -9.78438 -9.50360 -9.27118 -9.14161 -8.68089 -8.21516 -6.17614 -4.19558 -0.33918 0.62795 1.16705 1.24015 2.74281 2.90740 3.29756 3.32375 3.41806 3.47873 3.96524 4.14195 4.34537 4.39727 4.55540 4.57643 4.62177 4.74312 4.97024 5.05336 5.10954 5.14378 5.20427 5.29094 5.37238 5.43864 5.63583 5.68430 5.82261 5.87294 5.96884 5.98641 6.05994 6.27365 6.28464 6.42344 6.52886 6.63620 6.71780 7.04943 7.33061 7.49232 7.63248 7.68950 8.32431 8.42905 8.85643 9.43661 10.94424 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.003581 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.926149 B = 7817.009541 C = 8524.560177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.078 0.922 9 C 0.006 3.994 10 H 0.030 0.970 11 C -0.102 4.102 12 C -0.137 4.137 13 C 0.107 3.893 14 N -0.605 5.605 15 C 0.506 3.494 16 O -0.540 6.540 17 C -0.105 4.105 18 C -0.057 4.057 19 C -0.052 4.052 20 C -0.115 4.115 21 C -0.059 4.059 22 C -0.043 4.043 23 N 0.031 4.969 24 O -0.164 6.164 25 O -0.161 6.161 26 C -0.041 4.041 27 C 0.101 3.899 28 H 0.266 0.734 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.068 0.932 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.268 -0.013 -0.699 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.710 3.290 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.096 0.904 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.016 4.016 14 N -0.338 5.338 15 C 0.292 3.708 16 O -0.417 6.417 17 C -0.145 4.145 18 C -0.058 4.058 19 C -0.071 4.071 20 C -0.133 4.133 21 C -0.078 4.078 22 C -0.126 4.126 23 N 0.550 4.450 24 O -0.380 6.380 25 O -0.377 6.377 26 C -0.060 4.060 27 C -0.019 4.019 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.086 0.914 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.684 0.404 -0.102 21.688 hybrid contribution 0.318 1.066 -0.406 1.184 sum 22.002 1.470 -0.508 22.057 Atomic orbital electron populations 1.69888 1.06259 1.27202 1.49794 1.25043 0.94753 0.99056 0.94071 0.86979 0.79564 0.83533 0.78914 1.20014 1.22256 1.18993 1.20953 0.88190 0.94650 1.51830 0.90399 1.19477 0.96888 0.92185 0.92827 0.95233 1.21451 0.91953 0.98837 1.01682 1.21990 0.98692 0.99606 0.97199 1.21760 0.97111 0.83517 0.99236 1.48445 1.08485 1.05762 1.71073 1.20307 0.88302 0.84706 0.77449 1.90739 1.75248 1.25604 1.50153 1.20792 0.93485 0.94371 1.05819 1.19343 0.97994 0.96626 0.91859 1.21537 0.92620 0.93664 0.99243 1.21173 0.99567 0.95847 0.96752 1.21050 0.96155 1.00143 0.90462 1.21039 1.11721 0.97514 0.82332 1.43616 0.97932 1.00343 1.03149 1.94520 1.43559 1.06534 1.93352 1.94548 1.54697 1.60622 1.27808 1.20872 0.93262 0.92510 0.99398 1.22647 0.75412 1.02599 1.01256 0.92434 0.92121 0.92415 0.92004 0.91475 0.91216 0.90648 0.87125 0.87323 0.83987 0.83416 0.83033 0.83093 0.91411 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 2 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 3 Si 0.88 22.88 24.32 -169.99 -4.13 18.75 16 4 H -0.27 -7.27 6.92 56.52 0.39 -6.88 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.26 -6.79 6.53 56.52 0.37 -6.42 16 7 C -0.52 -13.98 9.14 -34.44 -0.31 -14.29 16 8 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 9 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 10 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 11 C -0.10 -1.76 5.11 -26.69 -0.14 -1.90 16 12 C -0.14 -1.73 6.08 -26.61 -0.16 -1.90 16 13 C 0.11 1.25 6.34 -3.71 -0.02 1.23 16 14 N -0.60 -9.98 2.97 -172.77 -0.51 -10.50 16 15 C 0.51 8.14 7.69 -10.99 -0.08 8.06 16 16 O -0.54 -11.32 15.45 5.55 0.09 -11.24 16 17 C -0.10 -1.04 4.18 -29.03 -0.12 -1.16 16 18 C -0.06 -0.61 4.37 -104.62 -0.46 -1.07 16 19 C -0.05 -0.48 9.70 -39.58 -0.38 -0.87 16 20 C -0.11 -0.94 10.05 -39.58 -0.40 -1.34 16 21 C -0.06 -0.58 9.56 -39.58 -0.38 -0.95 16 22 C -0.04 -0.53 6.85 -79.95 -0.55 -1.07 16 23 N 0.03 0.43 4.45 33.96 0.15 0.58 16 24 O -0.16 -2.33 18.45 -29.46 -0.54 -2.88 16 25 O -0.16 -2.40 18.45 -29.46 -0.54 -2.94 16 26 C -0.04 -0.48 9.21 -39.58 -0.36 -0.84 16 27 C 0.10 2.15 5.11 -3.71 -0.02 2.13 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 35 H 0.11 0.79 7.64 -51.93 -0.40 0.39 16 36 H 0.11 0.80 7.88 -51.93 -0.41 0.39 16 37 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.15 1.22 7.61 -52.49 -0.40 0.82 16 40 H 0.15 1.65 7.61 -52.49 -0.40 1.25 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.08 1.92 2.34 -51.93 -0.12 1.80 16 LS Contribution 346.77 15.07 5.23 5.23 Total: -1.00 -34.82 346.77 -8.54 -43.37 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.39 Total: -2.09 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.66 Total: -12.01 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.41 Total: -36.19 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -1.00 Total: -17.05 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.13 Total: 18.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.82 -8.54 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.200 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds