Wall clock time and date at job start Tue Mar 31 2020 12:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00275 * 2 1 4 4 H 1.48493 * 109.47277 * 270.00383 * 3 2 1 5 5 H 1.48504 * 109.46795 * 30.00089 * 3 2 1 6 6 H 1.48497 * 109.46990 * 150.00092 * 3 2 1 7 7 C 1.37872 * 119.99459 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00066 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99914 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.49839 * 59.92675 * 9 7 2 11 11 C 1.53039 * 109.50029 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.52798 * 181.32171 * 11 9 7 13 13 C 1.53191 * 109.30997 * 298.61471 * 12 11 9 14 14 N 1.46931 * 108.76527 * 54.65907 * 13 12 11 15 15 C 1.34771 * 120.63154 * 126.36003 * 14 13 12 16 16 O 1.21284 * 120.00110 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99942 * 0.02562 * 15 14 13 18 18 C 1.50707 * 109.47135 * 180.02562 * 17 15 14 19 19 C 1.38254 * 119.99836 * 90.00125 * 18 17 15 20 20 C 1.38214 * 120.00040 * 179.97438 * 19 18 17 21 21 C 1.38255 * 119.99915 * 359.97438 * 20 19 18 22 22 C 1.38222 * 120.00055 * 0.02562 * 21 20 19 23 23 N 1.48012 * 120.00133 * 180.02562 * 22 21 20 24 24 O 1.21802 * 120.00021 * 359.97438 * 23 22 21 25 25 O 1.21792 * 120.00130 * 180.02562 * 23 22 21 26 26 C 1.38217 * 119.99876 * 269.72769 * 18 17 15 27 27 C 1.46919 * 118.73612 * 306.37786 * 14 13 12 28 28 H 0.97002 * 119.99471 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46050 * 301.33758 * 11 9 7 30 30 H 1.09004 * 109.46034 * 61.30973 * 11 9 7 31 31 H 1.08998 * 109.49692 * 58.57850 * 12 11 9 32 32 H 1.09003 * 109.49441 * 178.67822 * 12 11 9 33 33 H 1.08998 * 109.59857 * 294.86728 * 13 12 11 34 34 H 1.09003 * 109.70130 * 174.50265 * 13 12 11 35 35 H 1.08997 * 109.47722 * 299.99929 * 17 15 14 36 36 H 1.09001 * 109.47111 * 60.00343 * 17 15 14 37 37 H 1.07999 * 120.00227 * 0.02562 * 19 18 17 38 38 H 1.07997 * 120.00423 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.00334 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00104 * 0.02562 * 26 18 17 41 41 H 1.08997 * 109.59005 * 293.82473 * 27 14 13 42 42 H 1.09002 * 109.70256 * 173.46709 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 1 3.8750 -0.6799 0.8898 11 6 4.0222 -2.6368 -0.0001 12 6 5.5523 -2.6378 0.0338 13 6 6.0871 -1.9358 -1.2183 14 7 5.4866 -0.5974 -1.3027 15 6 6.2632 0.4973 -1.4238 16 8 5.7553 1.5966 -1.4921 17 6 7.7627 0.3556 -1.4744 18 6 8.3918 1.7183 -1.6105 19 6 8.7296 2.4396 -0.4805 20 6 9.3071 3.6892 -0.6052 21 6 9.5473 4.2175 -1.8601 22 6 9.2095 3.4963 -2.9898 23 7 9.4671 4.0617 -4.3332 24 8 9.9764 5.1626 -4.4432 25 8 9.1690 3.4264 -5.3287 26 6 8.6361 2.2445 -2.8650 27 6 4.0233 -0.4754 -1.2522 28 1 -0.4849 0.8401 0.0004 29 1 3.6392 -3.1578 0.8775 30 1 3.6786 -3.1436 -0.9019 31 1 5.8968 -2.1094 0.9227 32 1 5.9149 -3.6655 0.0574 33 1 5.8197 -2.5128 -2.1035 34 1 7.1716 -1.8462 -1.1544 35 1 8.1142 -0.1164 -0.5570 36 1 8.0407 -0.2604 -2.3296 37 1 8.5432 2.0264 0.4998 38 1 9.5714 4.2525 0.2774 39 1 9.9988 5.1936 -1.9577 40 1 8.3758 1.6793 -3.7477 41 1 3.5875 -0.9334 -2.1401 42 1 3.7436 0.5773 -1.2093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:12 Heat of formation + Delta-G solvation = -36.303514 kcal Electronic energy + Delta-G solvation = -26586.965086 eV Core-core repulsion = 22727.212122 eV Total energy + Delta-G solvation = -3859.752964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.32668 -41.49202 -40.29487 -38.46915 -37.75965 -35.40148 -34.39360 -33.57577 -32.87825 -32.22235 -29.38886 -27.68925 -26.97292 -26.09649 -23.75952 -23.53544 -23.11031 -21.44950 -20.25952 -19.86364 -19.52786 -18.92261 -18.69522 -18.36671 -17.60210 -16.95641 -16.89158 -16.45435 -15.99021 -15.43809 -15.42590 -15.14631 -14.86645 -14.59416 -14.49192 -14.17057 -13.86034 -13.65299 -13.31978 -13.20766 -13.00998 -12.94554 -12.81118 -12.46965 -12.38615 -12.35535 -12.28259 -12.11432 -11.77856 -11.59606 -11.29466 -11.06433 -10.90282 -10.83019 -10.57089 -10.18091 -9.58564 -8.42224 -6.43984 -1.27443 -0.10115 0.26310 0.33322 1.18854 1.26716 1.34570 1.58837 1.96485 2.17026 2.36639 2.95456 3.19966 3.44149 3.59269 3.71481 3.87589 3.92377 3.99029 4.08974 4.16889 4.17947 4.39904 4.42950 4.46454 4.53113 4.60837 4.69793 4.72450 4.78453 4.90662 4.94732 4.98861 5.06144 5.16398 5.17287 5.25468 5.40269 5.48272 5.53963 5.63094 5.69514 6.24217 6.41364 6.49913 6.66001 7.15918 7.21701 8.74047 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.003581 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.926149 B = 7817.009541 C = 8524.560177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.026 3.974 3 Si 0.941 3.059 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.513 4.513 8 H 0.049 0.951 9 C 0.006 3.994 10 H 0.018 0.982 11 C -0.101 4.101 12 C -0.128 4.128 13 C 0.100 3.900 14 N -0.609 5.609 15 C 0.498 3.502 16 O -0.598 6.598 17 C -0.091 4.091 18 C -0.070 4.070 19 C -0.050 4.050 20 C -0.107 4.107 21 C -0.060 4.060 22 C -0.067 4.067 23 N 0.031 4.969 24 O -0.169 6.169 25 O -0.197 6.197 26 C -0.054 4.054 27 C 0.107 3.893 28 H 0.266 0.734 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.169 0.831 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.148 0.852 41 H 0.058 0.942 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.092 -1.098 0.832 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.172 4.172 3 Si 0.771 3.229 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.184 1.184 7 C -0.551 4.551 8 H 0.067 0.933 9 C -0.013 4.013 10 H 0.036 0.964 11 C -0.139 4.139 12 C -0.165 4.165 13 C -0.021 4.021 14 N -0.340 5.340 15 C 0.288 3.712 16 O -0.479 6.479 17 C -0.130 4.130 18 C -0.071 4.071 19 C -0.068 4.068 20 C -0.125 4.125 21 C -0.079 4.079 22 C -0.150 4.150 23 N 0.546 4.454 24 O -0.386 6.386 25 O -0.406 6.406 26 C -0.073 4.073 27 C -0.015 4.015 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.186 0.814 38 H 0.202 0.798 39 H 0.183 0.817 40 H 0.166 0.834 41 H 0.076 0.924 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 25.544 -0.752 1.395 25.593 hybrid contribution -0.883 1.351 -0.805 1.804 sum 24.660 0.599 0.589 24.675 Atomic orbital electron populations 1.69998 1.07625 1.27827 1.52511 1.25655 0.95177 1.01759 0.94619 0.86016 0.78511 0.80563 0.77818 1.21658 1.22385 1.18425 1.21387 0.91302 0.93062 1.49365 0.93322 1.19405 0.93499 0.95691 0.92751 0.96404 1.21406 0.96137 0.95025 1.01328 1.21952 0.94286 1.02364 0.97940 1.22193 0.99871 0.80815 0.99221 1.48471 1.06287 1.08260 1.71024 1.21410 0.90800 0.83419 0.75583 1.90717 1.76823 1.27862 1.52493 1.20865 0.87974 0.94850 1.09332 1.19532 0.98427 0.97436 0.91729 1.21993 0.91172 0.93707 0.99947 1.21622 0.98110 0.95709 0.97105 1.21400 0.95593 1.00576 0.90362 1.21295 1.13753 0.98481 0.81472 1.43964 0.97383 1.00139 1.03957 1.94483 1.43505 1.06899 1.93712 1.94532 1.56136 1.60934 1.28985 1.21009 0.93666 0.92534 1.00129 1.22039 0.79467 0.99993 1.00039 0.92440 0.92800 0.92651 0.91620 0.87454 0.90031 0.85282 0.82910 0.84122 0.81374 0.79842 0.81663 0.83436 0.92400 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.03 1.55 5.45 84.65 0.46 2.01 16 3 Si 0.94 49.38 24.32 68.60 1.67 51.04 16 4 H -0.29 -15.72 6.92 99.48 0.69 -15.03 16 5 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 6 H -0.26 -13.16 6.53 99.48 0.65 -12.51 16 7 C -0.51 -28.45 9.14 25.60 0.23 -28.22 16 8 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 9 C 0.01 0.27 1.84 -11.46 -0.02 0.25 16 10 H 0.02 0.83 7.20 -2.38 -0.02 0.81 16 11 C -0.10 -3.32 5.11 30.62 0.16 -3.17 16 12 C -0.13 -2.61 6.08 30.67 0.19 -2.42 16 13 C 0.10 1.80 6.34 86.36 0.55 2.35 16 14 N -0.61 -18.30 2.97 -818.91 -2.43 -20.74 16 15 C 0.50 14.57 7.69 87.66 0.67 15.24 16 16 O -0.60 -24.46 15.45 -3.04 -0.05 -24.51 16 17 C -0.09 -1.35 4.18 29.10 0.12 -1.22 16 18 C -0.07 -1.25 4.37 -19.86 -0.09 -1.34 16 19 C -0.05 -0.71 9.70 22.27 0.22 -0.49 16 20 C -0.11 -1.34 10.05 22.27 0.22 -1.12 16 21 C -0.06 -1.04 9.56 22.27 0.21 -0.82 16 22 C -0.07 -1.56 6.85 36.38 0.25 -1.31 16 23 N 0.03 0.89 4.45 -46.47 -0.21 0.68 16 24 O -0.17 -4.81 18.45 18.88 0.35 -4.46 16 25 O -0.20 -6.08 18.45 18.90 0.35 -5.73 16 26 C -0.05 -1.17 9.21 22.27 0.21 -0.97 16 27 C 0.11 4.52 5.11 86.36 0.44 4.96 16 28 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.13 1.03 5.93 -2.39 -0.01 1.01 16 35 H 0.15 1.02 7.64 -2.39 -0.02 1.00 16 36 H 0.14 1.23 7.88 -2.39 -0.02 1.21 16 37 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 39 H 0.17 2.28 7.61 -2.91 -0.02 2.26 16 40 H 0.15 3.15 7.61 -2.91 -0.02 3.13 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.05 2.25 2.34 -2.39 -0.01 2.25 16 Total: -1.00 -83.43 346.77 4.77 -78.66 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: 0.97 Total: -0.04 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 3.82 Total: -16.27 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.34 Total: -78.70 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: 0.65 Total: -34.70 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.67 Total: 51.04 kcal Total: -83.43 4.77 -78.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.355 kcal (2) G-P(sol) polarization free energy of solvation -83.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds