Wall clock time and date at job start Tue Mar 31 2020 12:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99698 * 2 1 4 4 H 1.48494 * 109.47384 * 264.79051 * 3 2 1 5 5 H 1.48505 * 109.47187 * 24.79340 * 3 2 1 6 6 H 1.48503 * 109.46693 * 144.78998 * 3 2 1 7 7 C 1.37875 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00566 * 4.92802 * 7 2 1 9 9 C 1.50706 * 119.99632 * 184.92805 * 7 2 1 10 10 H 1.09001 * 109.52433 * 335.11917 * 9 7 2 11 11 C 1.53342 * 109.68436 * 214.94832 * 9 7 2 12 12 C 1.53041 * 109.60902 * 178.74625 * 11 9 7 13 13 C 1.53187 * 109.31184 * 61.37442 * 12 11 9 14 14 N 1.46931 * 108.77785 * 305.36720 * 13 12 11 15 15 C 1.34774 * 120.63246 * 233.59185 * 14 13 12 16 16 O 1.21276 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99939 * 0.02562 * 15 14 13 18 18 C 1.50699 * 109.47288 * 180.02562 * 17 15 14 19 19 C 1.38255 * 120.00056 * 269.73141 * 18 17 15 20 20 C 1.38217 * 120.00117 * 179.74563 * 19 18 17 21 21 C 1.38253 * 119.99790 * 0.52063 * 20 19 18 22 22 C 1.38216 * 120.00253 * 359.75485 * 21 20 19 23 23 N 1.48017 * 120.00533 * 179.97438 * 22 21 20 24 24 O 1.21798 * 120.00274 * 179.97438 * 23 22 21 25 25 O 1.21805 * 119.99546 * 359.97438 * 23 22 21 26 26 C 1.38215 * 119.99875 * 89.99815 * 18 17 15 27 27 C 1.46927 * 118.73632 * 53.60446 * 14 13 12 28 28 H 0.96997 * 119.99573 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.41952 * 58.71241 * 11 9 7 30 30 H 1.09001 * 109.43401 * 298.79250 * 11 9 7 31 31 H 1.09004 * 109.49694 * 301.42567 * 12 11 9 32 32 H 1.08997 * 109.49669 * 181.32469 * 12 11 9 33 33 H 1.08996 * 109.59071 * 185.58010 * 13 12 11 34 34 H 1.09002 * 109.58879 * 65.15115 * 13 12 11 35 35 H 1.09000 * 109.47070 * 300.00706 * 17 15 14 36 36 H 1.08999 * 109.47145 * 60.00657 * 17 15 14 37 37 H 1.08003 * 120.00083 * 359.97438 * 19 18 17 38 38 H 1.07994 * 120.00048 * 180.29259 * 20 19 18 39 39 H 1.08000 * 120.00212 * 179.76706 * 21 20 19 40 40 H 1.07996 * 120.00315 * 0.02562 * 26 18 17 41 41 H 1.08998 * 109.58609 * 66.18477 * 27 14 13 42 42 H 1.09003 * 109.58504 * 186.46569 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6067 1.9830 -1.3942 5 1 1.3958 2.6820 0.5871 6 1 3.4873 1.4745 0.8073 7 6 2.0046 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0813 9 6 3.5074 -1.1965 0.1116 10 1 3.9014 -0.2472 -0.2515 11 6 4.0860 -2.3438 -0.7253 12 6 5.6136 -2.3256 -0.6353 13 6 6.0377 -2.5303 0.8224 14 7 5.3720 -1.5192 1.6551 15 6 6.0884 -0.7252 2.4753 16 8 5.5271 0.1053 3.1580 17 6 7.5869 -0.8693 2.5442 18 6 8.1427 0.1272 3.5286 19 6 8.5206 1.3859 3.0993 20 6 9.0255 2.3016 4.0031 21 6 9.1627 1.9553 5.3345 22 6 8.7902 0.6950 5.7627 23 7 8.9376 0.3240 7.1880 24 8 8.6089 -0.7865 7.5654 25 8 9.3875 1.1292 7.9835 26 6 8.2798 -0.2191 4.8597 27 6 3.9105 -1.3904 1.5767 28 1 -0.4849 0.8401 0.0004 29 1 3.7821 -2.2229 -1.7652 30 1 3.7112 -3.2944 -0.3458 31 1 5.9876 -1.3657 -0.9916 32 1 6.0238 -3.1271 -1.2495 33 1 7.1187 -2.4196 0.9075 34 1 5.7432 -3.5266 1.1521 35 1 7.8403 -1.8790 2.8674 36 1 8.0153 -0.6850 1.5591 37 1 8.4179 1.6549 2.0584 38 1 9.3163 3.2864 3.6686 39 1 9.5607 2.6695 6.0401 40 1 7.9891 -1.2039 5.1942 41 1 3.4426 -2.2937 1.9680 42 1 3.5878 -0.5290 2.1616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:18 Heat of formation + Delta-G solvation = -22.015592 kcal Electronic energy + Delta-G solvation = -26390.817532 eV Core-core repulsion = 22531.684138 eV Total energy + Delta-G solvation = -3859.133393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.32103 -40.38694 -39.28481 -37.05817 -36.70022 -33.78588 -33.24037 -32.12753 -31.97269 -30.66513 -28.40538 -26.75733 -25.30922 -24.71052 -22.96968 -22.17155 -21.97876 -20.05785 -19.08750 -18.80528 -18.46280 -17.67008 -17.20352 -16.89230 -16.75751 -16.07550 -15.59999 -14.96056 -14.76193 -14.32757 -13.97912 -13.82794 -13.67845 -13.37196 -12.94541 -12.86339 -12.62390 -12.54701 -12.41549 -12.07441 -11.86853 -11.68451 -11.34532 -11.30021 -11.27749 -11.14869 -10.82209 -10.66002 -10.17625 -9.91760 -9.81344 -9.79952 -9.56847 -9.34099 -9.13707 -8.65969 -8.19314 -6.18748 -4.20087 -0.33537 0.63594 1.17128 1.24308 2.77462 2.92047 3.22951 3.33575 3.36928 3.40033 3.97561 4.14895 4.34765 4.40443 4.56261 4.59576 4.63288 4.75320 4.99193 5.06358 5.11942 5.12755 5.22808 5.30152 5.41081 5.44546 5.64263 5.71736 5.82990 5.88323 5.97583 6.04582 6.16590 6.28079 6.31502 6.50442 6.56956 6.68675 6.77706 7.16283 7.25697 7.49508 7.63838 7.73564 8.35708 8.43252 8.86541 9.44210 10.93773 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.003323 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.487099 B = 8423.031597 C = 8947.066275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.516 4.516 8 H 0.076 0.924 9 C 0.008 3.992 10 H 0.034 0.966 11 C -0.107 4.107 12 C -0.138 4.138 13 C 0.107 3.893 14 N -0.606 5.606 15 C 0.506 3.494 16 O -0.540 6.540 17 C -0.106 4.106 18 C -0.056 4.056 19 C -0.053 4.053 20 C -0.115 4.115 21 C -0.059 4.059 22 C -0.043 4.043 23 N 0.031 4.969 24 O -0.161 6.161 25 O -0.165 6.165 26 C -0.041 4.041 27 C 0.113 3.887 28 H 0.266 0.734 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.062 0.938 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.930 -0.634 3.063 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.554 4.554 8 H 0.094 0.906 9 C -0.012 4.012 10 H 0.052 0.948 11 C -0.144 4.144 12 C -0.176 4.176 13 C -0.016 4.016 14 N -0.339 5.339 15 C 0.293 3.707 16 O -0.417 6.417 17 C -0.146 4.146 18 C -0.057 4.057 19 C -0.071 4.071 20 C -0.133 4.133 21 C -0.078 4.078 22 C -0.126 4.126 23 N 0.550 4.450 24 O -0.377 6.377 25 O -0.380 6.380 26 C -0.060 4.060 27 C -0.008 4.008 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.080 0.920 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.359 0.095 2.751 21.535 hybrid contribution 0.287 0.778 0.299 0.882 sum 21.646 0.874 3.050 21.877 Atomic orbital electron populations 1.69898 1.06348 1.27247 1.49553 1.25079 0.94695 0.99035 0.93894 0.86910 0.80708 0.83751 0.78652 1.20237 1.21454 1.18523 1.20881 0.88623 0.94707 1.51194 0.90622 1.19507 0.96892 0.94660 0.90149 0.94829 1.21643 0.91650 1.00098 1.01050 1.22005 0.99143 1.01541 0.94889 1.21742 0.96416 0.91929 0.91531 1.48521 1.09460 1.35294 1.40596 1.20261 0.88452 0.81601 0.80389 1.90731 1.72185 1.35403 1.43409 1.20802 0.94256 0.99699 0.99833 1.19343 0.98136 0.95440 0.92828 1.21538 0.92543 0.91923 1.01100 1.21170 1.00013 1.00622 0.91525 1.21045 0.95780 0.93655 0.97351 1.21040 1.12608 0.98013 0.80938 1.43622 0.97775 1.00294 1.03352 1.94548 1.52161 1.07855 1.83111 1.94521 1.46132 1.47009 1.50324 1.20868 0.93551 0.99905 0.91699 1.22480 0.74971 1.02144 1.01198 0.92443 0.92128 0.92656 0.92156 0.91586 0.90794 0.91315 0.87397 0.87226 0.84026 0.83443 0.83046 0.83100 0.91971 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.51 26.99 -169.99 -4.59 16.92 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.44 6.82 56.52 0.39 -6.05 16 7 C -0.52 -13.71 8.88 -34.44 -0.31 -14.02 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.01 0.17 1.93 -91.49 -0.18 -0.01 16 10 H 0.03 0.77 5.29 -51.93 -0.27 0.49 16 11 C -0.11 -1.86 5.17 -26.53 -0.14 -1.99 16 12 C -0.14 -1.77 6.08 -26.61 -0.16 -1.93 16 13 C 0.11 1.24 6.34 -3.71 -0.02 1.22 16 14 N -0.61 -9.71 2.97 -172.77 -0.51 -10.22 16 15 C 0.51 7.94 7.69 -10.99 -0.08 7.86 16 16 O -0.54 -11.01 15.45 5.56 0.09 -10.92 16 17 C -0.11 -1.04 4.18 -29.03 -0.12 -1.16 16 18 C -0.06 -0.59 4.37 -104.62 -0.46 -1.05 16 19 C -0.05 -0.48 9.70 -39.58 -0.38 -0.87 16 20 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 21 C -0.06 -0.57 9.56 -39.58 -0.38 -0.95 16 22 C -0.04 -0.52 6.85 -79.95 -0.55 -1.06 16 23 N 0.03 0.42 4.45 33.96 0.15 0.57 16 24 O -0.16 -2.36 18.45 -29.46 -0.54 -2.91 16 25 O -0.16 -2.31 18.45 -29.46 -0.54 -2.86 16 26 C -0.04 -0.47 9.21 -39.58 -0.36 -0.83 16 27 C 0.11 2.31 5.69 -3.71 -0.02 2.29 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.59 5.93 -51.93 -0.31 0.28 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.11 0.79 7.88 -51.93 -0.41 0.38 16 36 H 0.11 0.79 7.64 -51.93 -0.40 0.39 16 37 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 38 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.15 1.20 7.61 -52.49 -0.40 0.80 16 40 H 0.15 1.62 7.61 -52.49 -0.40 1.22 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.94 7.00 -51.93 -0.36 1.57 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -33.92 353.23 -9.02 -42.94 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.51 Total: -1.11 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -3.66 Total: -11.81 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.41 Total: -35.59 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -1.00 Total: -16.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.59 Total: 16.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.92 -9.02 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.929 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds