Wall clock time and date at job start Tue Mar 31 2020 12:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99698 * 2 1 4 4 H 1.48494 * 109.47384 * 264.79051 * 3 2 1 5 5 H 1.48505 * 109.47187 * 24.79340 * 3 2 1 6 6 H 1.48503 * 109.46693 * 144.78998 * 3 2 1 7 7 C 1.37875 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00566 * 4.92802 * 7 2 1 9 9 C 1.50706 * 119.99632 * 184.92805 * 7 2 1 10 10 H 1.09001 * 109.52433 * 335.11917 * 9 7 2 11 11 C 1.53342 * 109.68436 * 214.94832 * 9 7 2 12 12 C 1.53041 * 109.60902 * 178.74625 * 11 9 7 13 13 C 1.53187 * 109.31184 * 61.37442 * 12 11 9 14 14 N 1.46931 * 108.77785 * 305.36720 * 13 12 11 15 15 C 1.34774 * 120.63246 * 233.59185 * 14 13 12 16 16 O 1.21276 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99939 * 0.02562 * 15 14 13 18 18 C 1.50699 * 109.47288 * 180.02562 * 17 15 14 19 19 C 1.38255 * 120.00056 * 269.73141 * 18 17 15 20 20 C 1.38217 * 120.00117 * 179.74563 * 19 18 17 21 21 C 1.38253 * 119.99790 * 0.52063 * 20 19 18 22 22 C 1.38216 * 120.00253 * 359.75485 * 21 20 19 23 23 N 1.48017 * 120.00533 * 179.97438 * 22 21 20 24 24 O 1.21798 * 120.00274 * 179.97438 * 23 22 21 25 25 O 1.21805 * 119.99546 * 359.97438 * 23 22 21 26 26 C 1.38215 * 119.99875 * 89.99815 * 18 17 15 27 27 C 1.46927 * 118.73632 * 53.60446 * 14 13 12 28 28 H 0.96997 * 119.99573 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.41952 * 58.71241 * 11 9 7 30 30 H 1.09001 * 109.43401 * 298.79250 * 11 9 7 31 31 H 1.09004 * 109.49694 * 301.42567 * 12 11 9 32 32 H 1.08997 * 109.49669 * 181.32469 * 12 11 9 33 33 H 1.08996 * 109.59071 * 185.58010 * 13 12 11 34 34 H 1.09002 * 109.58879 * 65.15115 * 13 12 11 35 35 H 1.09000 * 109.47070 * 300.00706 * 17 15 14 36 36 H 1.08999 * 109.47145 * 60.00657 * 17 15 14 37 37 H 1.08003 * 120.00083 * 359.97438 * 19 18 17 38 38 H 1.07994 * 120.00048 * 180.29259 * 20 19 18 39 39 H 1.08000 * 120.00212 * 179.76706 * 21 20 19 40 40 H 1.07996 * 120.00315 * 0.02562 * 26 18 17 41 41 H 1.08998 * 109.58609 * 66.18477 * 27 14 13 42 42 H 1.09003 * 109.58504 * 186.46569 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6067 1.9830 -1.3942 5 1 1.3958 2.6820 0.5871 6 1 3.4873 1.4745 0.8073 7 6 2.0046 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0813 9 6 3.5074 -1.1965 0.1116 10 1 3.9014 -0.2472 -0.2515 11 6 4.0860 -2.3438 -0.7253 12 6 5.6136 -2.3256 -0.6353 13 6 6.0377 -2.5303 0.8224 14 7 5.3720 -1.5192 1.6551 15 6 6.0884 -0.7252 2.4753 16 8 5.5271 0.1053 3.1580 17 6 7.5869 -0.8693 2.5442 18 6 8.1427 0.1272 3.5286 19 6 8.5206 1.3859 3.0993 20 6 9.0255 2.3016 4.0031 21 6 9.1627 1.9553 5.3345 22 6 8.7902 0.6950 5.7627 23 7 8.9376 0.3240 7.1880 24 8 8.6089 -0.7865 7.5654 25 8 9.3875 1.1292 7.9835 26 6 8.2798 -0.2191 4.8597 27 6 3.9105 -1.3904 1.5767 28 1 -0.4849 0.8401 0.0004 29 1 3.7821 -2.2229 -1.7652 30 1 3.7112 -3.2944 -0.3458 31 1 5.9876 -1.3657 -0.9916 32 1 6.0238 -3.1271 -1.2495 33 1 7.1187 -2.4196 0.9075 34 1 5.7432 -3.5266 1.1521 35 1 7.8403 -1.8790 2.8674 36 1 8.0153 -0.6850 1.5591 37 1 8.4179 1.6549 2.0584 38 1 9.3163 3.2864 3.6686 39 1 9.5607 2.6695 6.0401 40 1 7.9891 -1.2039 5.1942 41 1 3.4426 -2.2937 1.9680 42 1 3.5878 -0.5290 2.1616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:17 Heat of formation + Delta-G solvation = -42.595776 kcal Electronic energy + Delta-G solvation = -26391.709955 eV Core-core repulsion = 22531.684138 eV Total energy + Delta-G solvation = -3860.025817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.31149 -41.43297 -40.25232 -38.39459 -37.74520 -35.32323 -34.37383 -33.51195 -32.86325 -32.13926 -29.37278 -27.67618 -27.00450 -26.00037 -23.74965 -23.35609 -23.07545 -21.41834 -20.24068 -19.85929 -19.57590 -18.96213 -18.67662 -18.14161 -17.58834 -16.92889 -16.77041 -16.47413 -15.89721 -15.42921 -15.31131 -15.11567 -14.72352 -14.51469 -14.37671 -14.13584 -13.83488 -13.71314 -13.29814 -13.05907 -12.99315 -12.87154 -12.76442 -12.69558 -12.41968 -12.37232 -12.26909 -12.00356 -11.73469 -11.62896 -11.30412 -11.07207 -10.87496 -10.74134 -10.55669 -10.16175 -9.54643 -8.36885 -6.39796 -1.26154 -0.08562 0.27628 0.34505 1.23788 1.31091 1.39520 1.63366 2.00422 2.27095 2.38683 3.01825 3.21641 3.45554 3.63285 3.73381 3.88920 3.93546 4.00909 4.10594 4.18463 4.23188 4.41660 4.45172 4.51997 4.58918 4.65419 4.73212 4.76872 4.81962 4.95880 4.98016 5.01825 5.07540 5.14391 5.18511 5.27818 5.42485 5.49482 5.59689 5.65430 5.73405 6.26994 6.42708 6.55267 6.69946 7.21040 7.27061 8.79711 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.003323 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.487099 B = 8423.031597 C = 8947.066275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.018 3.982 3 Si 0.937 3.063 4 H -0.258 1.258 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.514 4.514 8 H 0.039 0.961 9 C 0.007 3.993 10 H 0.026 0.974 11 C -0.106 4.106 12 C -0.129 4.129 13 C 0.101 3.899 14 N -0.609 5.609 15 C 0.500 3.500 16 O -0.597 6.597 17 C -0.093 4.093 18 C -0.069 4.069 19 C -0.051 4.051 20 C -0.107 4.107 21 C -0.060 4.060 22 C -0.066 4.066 23 N 0.031 4.969 24 O -0.196 6.196 25 O -0.170 6.170 26 C -0.054 4.054 27 C 0.125 3.875 28 H 0.266 0.734 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.151 0.849 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.148 0.852 41 H 0.054 0.946 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.060 -0.248 1.277 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.182 1.182 5 H -0.220 1.220 6 H -0.187 1.187 7 C -0.552 4.552 8 H 0.058 0.942 9 C -0.012 4.012 10 H 0.044 0.956 11 C -0.144 4.144 12 C -0.167 4.167 13 C -0.020 4.020 14 N -0.341 5.341 15 C 0.289 3.711 16 O -0.478 6.478 17 C -0.132 4.132 18 C -0.070 4.070 19 C -0.069 4.069 20 C -0.126 4.126 21 C -0.079 4.079 22 C -0.150 4.150 23 N 0.546 4.454 24 O -0.405 6.405 25 O -0.386 6.386 26 C -0.073 4.073 27 C 0.002 3.998 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.186 0.814 38 H 0.201 0.799 39 H 0.183 0.817 40 H 0.166 0.834 41 H 0.072 0.928 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 25.527 0.398 0.952 25.548 hybrid contribution -1.023 0.635 0.824 1.459 sum 24.504 1.032 1.776 24.590 Atomic orbital electron populations 1.70041 1.08051 1.27992 1.52344 1.25875 0.95334 1.02609 0.94223 0.85890 0.79016 0.79553 0.79328 1.18222 1.22032 1.18683 1.21263 0.91639 0.93047 1.49255 0.94231 1.19459 0.93600 0.96293 0.91894 0.95559 1.21554 0.95716 0.97763 0.99329 1.21966 0.94765 1.03405 0.96550 1.22152 0.99039 0.91119 0.89719 1.48509 1.07390 1.36554 1.41653 1.21324 0.90890 0.80054 0.78808 1.90711 1.73855 1.37752 1.45465 1.20867 0.88972 1.01393 1.01956 1.19527 0.98616 0.96509 0.92395 1.21989 0.91019 0.91258 1.02613 1.21615 0.98578 1.01936 0.90428 1.21392 0.95111 0.92869 0.98574 1.21290 1.14711 0.99452 0.79497 1.43967 0.97193 0.99947 1.04336 1.94532 1.53620 1.08531 1.83840 1.94485 1.46056 1.46834 1.51273 1.21004 0.93931 0.99972 0.92385 1.21796 0.78855 0.99971 0.99226 0.92536 0.93031 0.92935 0.91729 0.87672 0.85488 0.90153 0.84237 0.83110 0.81445 0.79895 0.81677 0.83418 0.92816 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.02 1.02 5.47 84.65 0.46 1.48 16 3 Si 0.94 45.56 26.99 68.60 1.85 47.41 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.26 -12.70 6.82 99.48 0.68 -12.02 16 7 C -0.51 -28.37 8.88 25.60 0.23 -28.14 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 9 C 0.01 0.31 1.93 -11.36 -0.02 0.29 16 10 H 0.03 1.18 5.29 -2.39 -0.01 1.16 16 11 C -0.11 -3.51 5.17 30.72 0.16 -3.35 16 12 C -0.13 -2.69 6.08 30.67 0.19 -2.50 16 13 C 0.10 1.82 6.34 86.36 0.55 2.37 16 14 N -0.61 -17.94 2.97 -818.91 -2.44 -20.38 16 15 C 0.50 14.33 7.69 87.66 0.67 15.01 16 16 O -0.60 -23.99 15.45 -3.02 -0.05 -24.04 16 17 C -0.09 -1.36 4.18 29.10 0.12 -1.24 16 18 C -0.07 -1.22 4.37 -19.87 -0.09 -1.31 16 19 C -0.05 -0.71 9.70 22.27 0.22 -0.50 16 20 C -0.11 -1.33 10.05 22.27 0.22 -1.11 16 21 C -0.06 -1.03 9.56 22.27 0.21 -0.81 16 22 C -0.07 -1.53 6.85 36.38 0.25 -1.28 16 23 N 0.03 0.88 4.45 -46.46 -0.21 0.67 16 24 O -0.20 -5.98 18.45 18.89 0.35 -5.63 16 25 O -0.17 -4.78 18.45 18.88 0.35 -4.43 16 26 C -0.05 -1.15 9.21 22.27 0.21 -0.94 16 27 C 0.12 5.14 5.69 86.36 0.49 5.63 16 28 H 0.27 15.64 8.31 -92.71 -0.77 14.86 16 29 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.13 1.04 5.93 -2.39 -0.01 1.03 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.14 1.22 7.88 -2.39 -0.02 1.20 16 36 H 0.15 1.03 7.64 -2.39 -0.02 1.01 16 37 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.17 2.25 7.61 -2.91 -0.02 2.23 16 40 H 0.15 3.10 7.61 -2.91 -0.02 3.08 16 41 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.04 2.02 7.00 -2.39 -0.02 2.00 16 Total: -1.00 -82.04 353.23 5.04 -77.00 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.01 Total: 4.45 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 3.87 Total: -16.39 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -2.34 Total: -78.36 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: 0.65 Total: -34.11 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.85 Total: 47.41 kcal Total: -82.04 5.04 -77.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.405 kcal (2) G-P(sol) polarization free energy of solvation -82.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds