Wall clock time and date at job start Tue Mar 31 2020 12:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42911 * 113.99612 * 2 1 4 4 C 1.53002 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47173 * 64.99473 * 4 3 2 6 6 C 1.46500 * 120.00162 * 270.00154 * 5 4 3 7 7 C 1.50698 * 109.46770 * 263.17396 * 6 5 4 8 8 H 1.07992 * 120.00478 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99881 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99944 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00244 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46975 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47204 * 120.00368 * 11 9 7 14 14 H 1.48507 * 109.46867 * 240.00039 * 11 9 7 15 15 C 1.34774 * 119.99449 * 90.00126 * 5 4 3 16 16 O 1.21629 * 120.00363 * 3.72944 * 15 5 4 17 17 C 1.47177 * 119.99898 * 183.72270 * 15 5 4 18 18 C 1.35747 * 125.12671 * 173.44316 * 17 15 5 19 19 C 1.46429 * 106.13510 * 179.97438 * 18 17 15 20 20 N 1.32943 * 133.88488 * 180.29925 * 19 18 17 21 21 C 1.31431 * 121.38033 * 180.21986 * 20 19 18 22 22 C 1.50705 * 119.40681 * 179.71720 * 21 20 19 23 23 C 1.38855 * 121.18541 * 359.43608 * 21 20 19 24 24 C 1.38208 * 119.71408 * 0.27896 * 23 21 20 25 25 C 1.39303 * 118.33515 * 0.02562 * 24 23 21 26 26 O 1.34586 * 133.43284 * 179.97438 * 25 24 23 27 27 H 1.09001 * 109.47418 * 299.99453 * 1 2 3 28 28 H 1.09001 * 109.47620 * 60.00295 * 1 2 3 29 29 H 1.09009 * 109.46983 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46811 * 60.00253 * 3 2 1 31 31 H 1.09002 * 109.46800 * 299.99890 * 3 2 1 32 32 H 1.09010 * 109.46810 * 304.99723 * 4 3 2 33 33 H 1.08996 * 109.46754 * 185.00384 * 4 3 2 34 34 H 1.08996 * 109.47355 * 23.17926 * 6 5 4 35 35 H 1.09003 * 109.46475 * 143.17820 * 6 5 4 36 36 H 0.96999 * 119.99900 * 180.02562 * 10 9 7 37 37 H 1.07995 * 126.93607 * 359.95298 * 18 17 15 38 38 H 1.09001 * 109.47082 * 269.72735 * 22 21 20 39 39 H 1.08997 * 109.47030 * 29.72332 * 22 21 20 40 40 H 1.08994 * 109.47071 * 149.72435 * 22 21 20 41 41 H 1.08000 * 120.14360 * 180.25565 * 23 21 20 42 42 H 1.07996 * 120.83915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.1052 -0.8919 -1.3426 7 6 5.5414 -1.2837 -1.1085 8 1 6.2833 -0.5240 -0.9119 9 6 5.9083 -2.6123 -1.1452 10 7 5.0049 -3.5376 -1.3851 11 14 7.6883 -3.0982 -0.8543 12 1 8.5003 -1.8793 -0.6088 13 1 7.7701 -3.9943 0.3269 14 1 8.2098 -3.8071 -2.0505 15 6 4.2614 1.3339 -2.3217 16 8 4.2194 2.5458 -2.2276 17 6 4.6243 0.7076 -3.6032 18 6 4.8078 1.3716 -4.7728 19 6 5.1538 0.3548 -5.7681 20 7 5.4457 0.3958 -7.0644 21 6 5.7228 -0.6980 -7.7385 22 6 6.0413 -0.6007 -9.2083 23 6 5.7329 -1.9409 -7.1195 24 6 5.4417 -2.0375 -5.7719 25 6 5.1442 -0.8689 -5.0744 26 8 4.8248 -0.6125 -3.7923 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6884 1.8464 -0.8900 32 1 3.8514 0.5685 0.8410 33 1 3.9783 2.1768 0.0890 34 1 3.4731 -1.3602 -0.5882 35 1 3.7950 -1.2237 -2.3335 36 1 5.2630 -4.4723 -1.4106 37 1 4.7166 2.4352 -4.9365 38 1 5.1223 -0.6967 -9.7864 39 1 6.5026 0.3646 -9.4169 40 1 6.7295 -1.3995 -9.4845 41 1 5.9668 -2.8284 -7.6887 42 1 5.4447 -2.9948 -5.2721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609257121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:52 Heat of formation + Delta-G solvation = -31.412726 kcal Electronic energy + Delta-G solvation = -27162.624788 eV Core-core repulsion = 23303.083904 eV Total energy + Delta-G solvation = -3859.540884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21105 -39.39286 -38.57385 -37.44547 -35.16348 -32.86492 -32.64431 -32.18916 -30.62275 -29.88307 -27.43426 -27.08174 -25.99516 -24.26922 -22.96106 -22.47046 -22.07069 -21.01246 -19.51426 -17.50994 -17.17177 -16.62926 -16.19600 -16.04600 -15.84311 -15.38399 -15.15978 -15.10218 -14.69269 -14.38251 -14.14254 -13.72868 -13.59913 -13.21606 -12.78563 -12.65054 -12.41671 -12.31437 -12.12661 -12.10110 -12.04497 -11.86436 -11.59502 -11.31187 -10.96640 -10.92476 -10.54680 -10.23895 -10.18213 -9.80451 -9.65225 -9.40625 -9.20412 -8.55453 -8.45259 -8.30156 -7.82488 -6.12424 -4.17253 0.83172 1.39728 2.15631 2.93249 3.22341 3.30928 3.35632 3.59630 3.64711 3.94405 4.07816 4.22602 4.38777 4.78599 4.80734 5.03740 5.21519 5.24092 5.31497 5.37249 5.43454 5.51042 5.55327 5.58198 5.58691 5.60039 5.62930 5.80846 5.86185 5.93696 5.98169 6.14954 6.22612 6.23748 6.48316 6.62341 6.67899 7.29021 7.38102 7.41511 7.54551 7.81486 8.08942 8.10064 8.10836 8.60056 8.88121 9.47362 10.94933 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010111 B = 0.005377 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.509011 B = 5206.331615 C = 6850.969063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.046 3.954 4 C 0.120 3.880 5 N -0.571 5.571 6 C 0.234 3.766 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.070 3.930 10 N -0.888 5.888 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.590 3.410 16 O -0.550 6.550 17 C 0.029 3.971 18 C -0.142 4.142 19 C 0.064 3.936 20 N -0.448 5.448 21 C 0.117 3.883 22 C -0.096 4.096 23 C -0.154 4.154 24 C -0.049 4.049 25 C 0.011 3.989 26 O -0.117 6.117 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.262 0.738 37 H 0.169 0.831 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 3.564 -6.658 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C -0.004 4.004 5 N -0.298 5.298 6 C 0.115 3.885 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.133 4.133 10 N -0.526 5.526 11 Si 0.716 3.284 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.376 3.624 16 O -0.432 6.432 17 C -0.024 4.024 18 C -0.164 4.164 19 C -0.065 4.065 20 N -0.159 5.159 21 C -0.030 4.030 22 C -0.154 4.154 23 C -0.174 4.174 24 C -0.075 4.075 25 C -0.041 4.041 26 O -0.014 6.014 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.187 0.813 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.162 0.838 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.023 4.407 -6.712 8.981 hybrid contribution 0.805 -1.070 0.573 1.457 sum -3.217 3.337 -6.139 7.693 Atomic orbital electron populations 1.22690 0.81955 1.02509 0.99243 1.88055 1.18855 1.27295 1.95229 1.23026 0.94871 0.85129 1.00103 1.21484 0.91411 1.00009 0.87469 1.48214 1.61368 1.10653 1.09609 1.19807 0.97608 0.71644 0.99419 1.21433 0.93579 0.92439 1.49254 0.92418 1.24818 0.97254 0.96258 0.94956 1.69951 1.33045 1.00687 1.48938 0.86585 0.85188 0.78661 0.77943 1.19768 1.20827 1.20908 1.16813 0.78052 0.85650 0.81859 1.90770 1.56128 1.12698 1.83602 1.22163 1.02702 0.81657 0.95896 1.22241 1.05444 0.99684 0.89002 1.20595 1.02808 0.92176 0.90928 1.66763 1.11299 1.31582 1.06265 1.21173 0.97170 0.87981 0.96710 1.20633 1.02067 1.03426 0.89228 1.21748 1.02713 0.98968 0.93926 1.20572 0.97332 0.96671 0.92953 1.20812 1.01640 0.96663 0.84935 1.84896 1.69139 1.23391 1.23952 0.94607 0.94583 0.89791 0.92742 0.93255 0.88873 0.88841 0.92738 0.93140 0.92809 0.81323 0.90629 0.90643 0.90754 0.83841 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.49 9.66 -35.23 -0.34 -6.83 16 3 C 0.05 0.72 6.28 37.16 0.23 0.95 16 4 C 0.12 2.11 5.81 -4.04 -0.02 2.08 16 5 N -0.57 -12.17 2.44 -176.42 -0.43 -12.60 16 6 C 0.23 5.69 4.53 -5.19 -0.02 5.67 16 7 C -0.53 -13.91 8.35 -34.44 -0.29 -14.20 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 10 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 11 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.59 12.73 7.59 -12.63 -0.10 12.63 16 16 O -0.55 -12.02 16.39 5.25 0.09 -11.94 16 17 C 0.03 0.62 6.71 -36.85 -0.25 0.38 16 18 C -0.14 -2.75 10.81 -37.18 -0.40 -3.15 16 19 C 0.06 1.24 7.52 -83.17 -0.63 0.62 16 20 N -0.45 -7.96 10.32 -6.13 -0.06 -8.02 16 21 C 0.12 1.70 6.78 -82.53 -0.56 1.14 16 22 C -0.10 -0.96 10.16 36.01 0.37 -0.59 16 23 C -0.15 -2.13 9.71 -39.36 -0.38 -2.51 16 24 C -0.05 -0.83 10.19 -39.20 -0.40 -1.23 16 25 C 0.01 0.22 7.42 -38.27 -0.28 -0.06 16 26 O -0.12 -2.63 6.39 3.40 0.02 -2.61 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.63 8.07 -51.92 -0.42 1.21 16 33 H 0.09 1.54 7.37 -51.93 -0.38 1.15 16 34 H 0.05 1.41 7.27 -51.93 -0.38 1.03 16 35 H 0.05 1.32 5.41 -51.93 -0.28 1.04 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.17 2.91 8.06 -52.49 -0.42 2.49 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 41 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -31.29 361.15 -6.94 -38.23 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.65 Total: 1.08 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.72 Total: 5.02 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.24 Total: -44.24 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.23 Total: -21.37 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.29 -6.94 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609257121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.817 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds