Wall clock time and date at job start Tue Mar 31 2020 12:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42911 * 113.99612 * 2 1 4 4 C 1.53002 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47173 * 64.99473 * 4 3 2 6 6 C 1.46500 * 120.00162 * 270.00154 * 5 4 3 7 7 C 1.50698 * 109.46770 * 263.17396 * 6 5 4 8 8 H 1.07992 * 120.00478 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99881 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99944 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00244 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46975 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47204 * 120.00368 * 11 9 7 14 14 H 1.48507 * 109.46867 * 240.00039 * 11 9 7 15 15 C 1.34774 * 119.99449 * 90.00126 * 5 4 3 16 16 O 1.21629 * 120.00363 * 3.72944 * 15 5 4 17 17 C 1.47177 * 119.99898 * 183.72270 * 15 5 4 18 18 C 1.35747 * 125.12671 * 173.44316 * 17 15 5 19 19 C 1.46429 * 106.13510 * 179.97438 * 18 17 15 20 20 N 1.32943 * 133.88488 * 180.29925 * 19 18 17 21 21 C 1.31431 * 121.38033 * 180.21986 * 20 19 18 22 22 C 1.50705 * 119.40681 * 179.71720 * 21 20 19 23 23 C 1.38855 * 121.18541 * 359.43608 * 21 20 19 24 24 C 1.38208 * 119.71408 * 0.27896 * 23 21 20 25 25 C 1.39303 * 118.33515 * 0.02562 * 24 23 21 26 26 O 1.34586 * 133.43284 * 179.97438 * 25 24 23 27 27 H 1.09001 * 109.47418 * 299.99453 * 1 2 3 28 28 H 1.09001 * 109.47620 * 60.00295 * 1 2 3 29 29 H 1.09009 * 109.46983 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46811 * 60.00253 * 3 2 1 31 31 H 1.09002 * 109.46800 * 299.99890 * 3 2 1 32 32 H 1.09010 * 109.46810 * 304.99723 * 4 3 2 33 33 H 1.08996 * 109.46754 * 185.00384 * 4 3 2 34 34 H 1.08996 * 109.47355 * 23.17926 * 6 5 4 35 35 H 1.09003 * 109.46475 * 143.17820 * 6 5 4 36 36 H 0.96999 * 119.99900 * 180.02562 * 10 9 7 37 37 H 1.07995 * 126.93607 * 359.95298 * 18 17 15 38 38 H 1.09001 * 109.47082 * 269.72735 * 22 21 20 39 39 H 1.08997 * 109.47030 * 29.72332 * 22 21 20 40 40 H 1.08994 * 109.47071 * 149.72435 * 22 21 20 41 41 H 1.08000 * 120.14360 * 180.25565 * 23 21 20 42 42 H 1.07996 * 120.83915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.1052 -0.8919 -1.3426 7 6 5.5414 -1.2837 -1.1085 8 1 6.2833 -0.5240 -0.9119 9 6 5.9083 -2.6123 -1.1452 10 7 5.0049 -3.5376 -1.3851 11 14 7.6883 -3.0982 -0.8543 12 1 8.5003 -1.8793 -0.6088 13 1 7.7701 -3.9943 0.3269 14 1 8.2098 -3.8071 -2.0505 15 6 4.2614 1.3339 -2.3217 16 8 4.2194 2.5458 -2.2276 17 6 4.6243 0.7076 -3.6032 18 6 4.8078 1.3716 -4.7728 19 6 5.1538 0.3548 -5.7681 20 7 5.4457 0.3958 -7.0644 21 6 5.7228 -0.6980 -7.7385 22 6 6.0413 -0.6007 -9.2083 23 6 5.7329 -1.9409 -7.1195 24 6 5.4417 -2.0375 -5.7719 25 6 5.1442 -0.8689 -5.0744 26 8 4.8248 -0.6125 -3.7923 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6884 1.8464 -0.8900 32 1 3.8514 0.5685 0.8410 33 1 3.9783 2.1768 0.0890 34 1 3.4731 -1.3602 -0.5882 35 1 3.7950 -1.2237 -2.3335 36 1 5.2630 -4.4723 -1.4106 37 1 4.7166 2.4352 -4.9365 38 1 5.1223 -0.6967 -9.7864 39 1 6.5026 0.3646 -9.4169 40 1 6.7295 -1.3995 -9.4845 41 1 5.9668 -2.8284 -7.6887 42 1 5.4447 -2.9948 -5.2721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609257121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:51 Heat of formation + Delta-G solvation = -51.146953 kcal Electronic energy + Delta-G solvation = -27163.480528 eV Core-core repulsion = 23303.083904 eV Total energy + Delta-G solvation = -3860.396624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.68630 -40.94171 -39.94824 -38.75097 -36.85534 -34.61574 -34.23639 -33.40439 -32.06831 -31.28158 -29.04764 -28.50641 -27.16772 -25.68886 -24.83212 -23.83186 -23.33241 -22.48519 -21.06025 -19.11424 -18.74074 -18.39427 -17.65684 -17.50317 -17.31002 -16.71942 -16.63297 -16.48573 -16.18730 -16.02825 -15.44608 -14.98777 -14.90559 -14.66866 -14.38896 -14.14393 -14.05863 -13.56262 -13.48495 -13.32800 -13.08962 -13.02023 -12.98370 -12.83355 -12.78549 -12.56483 -12.20785 -11.93966 -11.70861 -11.60298 -11.38725 -10.62782 -10.57501 -10.48351 -9.95380 -9.73899 -9.47321 -8.16728 -6.28264 -0.58994 0.09567 0.68464 1.35283 1.38173 1.46250 1.49030 2.01891 2.06971 2.40397 2.64093 2.86961 2.91316 3.14365 3.39688 3.56029 3.77875 3.84421 4.09611 4.14762 4.20842 4.25453 4.36602 4.48086 4.51398 4.54246 4.58185 4.71885 4.81983 4.82693 4.83488 4.87374 4.91586 4.95805 5.12895 5.17216 5.35640 5.47338 5.62396 5.74997 5.95775 6.07536 6.23428 6.35554 6.78156 6.81371 6.97336 7.39397 8.90343 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010111 B = 0.005377 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.509011 B = 5206.331615 C = 6850.969063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.053 3.947 4 C 0.112 3.888 5 N -0.575 5.575 6 C 0.258 3.742 7 C -0.535 4.535 8 H 0.044 0.956 9 C 0.031 3.969 10 N -0.913 5.913 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.274 1.274 14 H -0.276 1.276 15 C 0.588 3.412 16 O -0.559 6.559 17 C -0.006 4.006 18 C -0.128 4.128 19 C 0.045 3.955 20 N -0.467 5.467 21 C 0.119 3.881 22 C -0.094 4.094 23 C -0.127 4.127 24 C -0.068 4.068 25 C -0.021 4.021 26 O -0.145 6.145 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.266 0.734 37 H 0.184 0.816 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.194 0.806 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 3.065 -8.488 9.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.024 4.024 4 C -0.010 4.010 5 N -0.303 5.303 6 C 0.138 3.862 7 C -0.574 4.574 8 H 0.062 0.938 9 C -0.170 4.170 10 N -0.552 5.552 11 Si 0.770 3.230 12 H -0.202 1.202 13 H -0.199 1.199 14 H -0.201 1.201 15 C 0.375 3.625 16 O -0.442 6.442 17 C -0.059 4.059 18 C -0.149 4.149 19 C -0.083 4.083 20 N -0.178 5.178 21 C -0.028 4.028 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.094 4.094 25 C -0.072 4.072 26 O -0.043 6.043 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.202 0.798 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.211 0.789 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.363 3.927 -8.521 9.968 hybrid contribution 0.598 -0.963 0.948 1.478 sum -2.766 2.965 -7.573 8.590 Atomic orbital electron populations 1.22876 0.79865 1.03355 1.00725 1.88003 1.21291 1.28337 1.95523 1.22974 0.93054 0.84886 1.01472 1.21742 0.93377 1.00117 0.85800 1.48184 1.61627 1.09560 1.10902 1.19281 0.96098 0.73326 0.97535 1.21523 0.94176 0.92416 1.49251 0.93806 1.25452 1.00664 0.96187 0.94678 1.70035 1.34645 1.01021 1.49483 0.85721 0.80921 0.78134 0.78214 1.20217 1.19933 1.20132 1.16901 0.77825 0.85637 0.82121 1.90736 1.56817 1.12715 1.83923 1.22177 1.05378 0.81874 0.96426 1.22476 1.03525 1.00347 0.88594 1.20635 1.04127 0.91728 0.91795 1.66867 1.12269 1.33289 1.05399 1.22138 0.94556 0.87421 0.98717 1.20820 1.03757 1.04801 0.85693 1.22329 0.99180 1.00611 0.92483 1.20911 0.98284 0.95839 0.94394 1.21349 1.03099 0.98318 0.84398 1.84786 1.70105 1.23910 1.25529 0.92048 0.94068 0.89387 0.89055 0.93924 0.89195 0.87694 0.94778 0.95027 0.92474 0.79836 0.88686 0.90691 0.87428 0.78876 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.41 9.66 -148.98 -1.44 -15.85 16 3 C 0.05 1.65 6.28 71.98 0.45 2.10 16 4 C 0.11 4.03 5.81 86.38 0.50 4.53 16 5 N -0.58 -25.61 2.44 -830.32 -2.03 -27.63 16 6 C 0.26 13.18 4.53 85.63 0.39 13.56 16 7 C -0.54 -29.20 8.35 25.60 0.21 -28.99 16 8 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 9 C 0.03 1.66 5.46 84.65 0.46 2.12 16 10 N -0.91 -51.09 13.29 21.45 0.28 -50.80 16 11 Si 0.94 43.14 29.54 68.60 2.03 45.17 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 15 C 0.59 26.47 7.59 86.59 0.66 27.13 16 16 O -0.56 -25.06 16.39 -4.12 -0.07 -25.13 16 17 C -0.01 -0.26 6.71 24.04 0.16 -0.10 16 18 C -0.13 -5.11 10.81 23.83 0.26 -4.85 16 19 C 0.04 1.77 7.52 41.70 0.31 2.08 16 20 N -0.47 -16.04 10.32 -173.30 -1.79 -17.82 16 21 C 0.12 3.12 6.78 42.77 0.29 3.41 16 22 C -0.09 -1.45 10.16 71.24 0.72 -0.73 16 23 C -0.13 -3.11 9.71 22.41 0.22 -2.89 16 24 C -0.07 -2.28 10.19 22.52 0.23 -2.05 16 25 C -0.02 -0.85 7.42 23.12 0.17 -0.68 16 26 O -0.14 -6.89 6.39 -10.76 -0.07 -6.96 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.09 3.25 8.07 -2.38 -0.02 3.23 16 33 H 0.10 3.49 7.37 -2.39 -0.02 3.47 16 34 H 0.03 1.87 7.27 -2.39 -0.02 1.85 16 35 H 0.03 1.77 5.41 -2.39 -0.01 1.76 16 36 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.18 6.48 8.06 -2.91 -0.02 6.45 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.01 8.07 -2.39 -0.02 0.99 16 41 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.15 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -70.52 361.15 4.24 -66.28 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.03 Total: 16.14 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.29 Total: 16.60 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.53 Total: -96.26 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -1.58 Total: -47.93 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.52 4.24 -66.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609257121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.131 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds