Wall clock time and date at job start Tue Mar 31 2020 12:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99795 * 2 1 4 4 H 1.48503 * 109.46842 * 270.00267 * 3 2 1 5 5 H 1.48500 * 109.47238 * 30.00184 * 3 2 1 6 6 H 1.48494 * 109.47243 * 150.00310 * 3 2 1 7 7 C 1.37874 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00234 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47208 * 180.02562 * 9 7 2 11 11 O 1.42894 * 109.47142 * 180.02562 * 10 9 7 12 12 C 1.35905 * 116.99915 * 180.02562 * 11 10 9 13 13 C 1.38809 * 120.01739 * 359.72186 * 12 11 10 14 14 C 1.38170 * 120.07924 * 179.74451 * 13 12 11 15 15 C 1.38165 * 120.12746 * 0.51122 * 14 13 12 16 16 C 1.38889 * 120.04043 * 359.76495 * 15 14 13 17 17 N 1.39918 * 120.04544 * 179.97438 * 16 15 14 18 18 C 1.34774 * 119.99968 * 324.71423 * 17 16 15 19 19 O 1.21293 * 120.00241 * 5.72080 * 18 17 16 20 20 C 1.50705 * 120.00280 * 185.72279 * 18 17 16 21 21 C 1.50704 * 115.54461 * 37.05487 * 20 18 17 22 22 N 1.34774 * 120.00154 * 64.59602 * 21 20 18 23 23 O 1.21276 * 119.99880 * 244.58698 * 21 20 18 24 24 C 1.52998 * 117.49880 * 251.35360 * 20 18 17 25 25 C 1.52991 * 117.50312 * 182.72727 * 20 18 17 26 26 C 1.38580 * 120.01945 * 180.02562 * 12 11 10 27 27 H 0.96996 * 119.99817 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47213 * 60.00390 * 9 7 2 29 29 H 1.09003 * 109.47196 * 300.00318 * 9 7 2 30 30 H 1.09003 * 109.46952 * 300.00038 * 10 9 7 31 31 H 1.08992 * 109.47191 * 59.99526 * 10 9 7 32 32 H 1.08001 * 119.95941 * 359.97438 * 13 12 11 33 33 H 1.08004 * 119.93447 * 180.23138 * 14 13 12 34 34 H 1.08004 * 119.97932 * 179.74166 * 15 14 13 35 35 H 0.96998 * 120.00322 * 144.70442 * 17 16 15 36 36 H 0.97004 * 119.99623 * 6.71695 * 22 21 20 37 37 H 0.97001 * 120.00392 * 186.72470 * 22 21 20 38 38 H 1.09001 * 117.49895 * 359.97438 * 24 20 18 39 39 H 1.09001 * 117.49648 * 145.01835 * 24 20 18 40 40 H 1.08998 * 117.50229 * 214.98408 * 25 20 18 41 41 H 1.09001 * 117.50016 * 359.97438 * 25 20 18 42 42 H 1.08003 * 120.06406 * 359.96934 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5310 -4.8995 -0.0011 12 6 2.2712 -6.0393 -0.0007 13 6 3.6574 -5.9671 -0.0055 14 6 4.4112 -7.1250 0.0003 15 6 3.7881 -8.3582 0.0002 16 6 2.4014 -8.4365 -0.0007 17 7 1.7702 -9.6852 -0.0013 18 6 2.3170 -10.7163 -0.6753 19 8 3.4062 -10.5922 -1.1944 20 6 1.5752 -12.0236 -0.7841 21 6 0.0803 -11.9116 -0.9390 22 7 -0.4419 -11.3377 -2.0409 23 8 -0.6527 -12.3380 -0.0720 24 6 2.1161 -13.2114 0.0141 25 6 2.2759 -13.1755 -1.5071 26 6 1.6425 -7.2743 -0.0018 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6043 0.8893 32 1 4.1473 -5.0046 -0.0100 33 1 5.4896 -7.0661 0.0003 34 1 4.3796 -9.2618 0.0006 35 1 0.9392 -9.8089 0.4835 36 1 0.1372 -11.0851 -2.7770 37 1 -1.3969 -11.1770 -2.0979 38 1 3.0089 -13.0475 0.6177 39 1 1.3908 -13.9121 0.4276 40 1 1.6558 -13.8526 -2.0945 41 1 3.2734 -12.9878 -1.9044 42 1 0.5640 -7.3324 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609459556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:49 Heat of formation + Delta-G solvation = -64.674997 kcal Electronic energy + Delta-G solvation = -25305.489785 eV Core-core repulsion = 21444.506541 eV Total energy + Delta-G solvation = -3860.983244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39236 -40.02307 -39.19373 -37.45292 -36.24006 -34.78013 -34.10216 -33.38925 -30.95317 -29.88547 -29.03918 -26.15958 -25.06478 -23.31642 -22.97251 -22.67266 -21.82238 -20.56225 -19.97955 -18.79197 -18.27036 -17.52601 -16.58919 -16.31862 -16.19137 -15.74419 -15.64621 -15.37399 -15.26885 -14.99534 -14.70974 -14.44361 -14.42817 -13.62533 -13.50554 -13.04549 -12.78089 -12.34636 -12.23795 -11.98002 -11.71332 -11.63522 -11.40781 -11.22039 -10.96551 -10.82001 -10.67307 -10.55832 -10.37634 -10.21921 -10.07172 -9.85079 -9.68519 -9.32815 -8.49090 -8.41418 -7.85138 -6.12681 -4.17426 1.20233 1.61505 1.89136 2.02496 2.53080 2.77558 3.25972 3.27576 3.32115 3.34872 3.80279 3.88127 4.08347 4.15106 4.20809 4.29751 4.39522 4.93322 5.00561 5.11361 5.23853 5.27444 5.29782 5.32348 5.41569 5.55425 5.59720 5.71120 6.00139 6.00293 6.19173 6.22523 6.28468 6.49102 6.56305 6.68082 6.73965 6.90702 7.04995 7.46753 7.60745 7.63298 7.69848 7.77683 8.00771 8.20972 8.88139 9.47077 10.98871 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026404 B = 0.002185 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.173974 B =12814.021478 C =13585.911636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.314 6.314 12 C 0.163 3.837 13 C -0.220 4.220 14 C -0.063 4.063 15 C -0.168 4.168 16 C 0.171 3.829 17 N -0.662 5.662 18 C 0.559 3.441 19 O -0.506 6.506 20 C -0.208 4.208 21 C 0.557 3.443 22 N -0.844 5.844 23 O -0.528 6.528 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.185 4.185 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.412 0.588 36 H 0.406 0.594 37 H 0.408 0.592 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 -26.853 -3.050 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.227 6.227 12 C 0.115 3.885 13 C -0.239 4.239 14 C -0.082 4.082 15 C -0.188 4.188 16 C 0.078 3.922 17 N -0.306 5.306 18 C 0.345 3.655 19 O -0.381 6.381 20 C -0.214 4.214 21 C 0.339 3.661 22 N -0.407 5.407 23 O -0.403 6.403 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.206 4.206 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.248 0.752 36 H 0.235 0.765 37 H 0.240 0.760 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.054 -26.961 -2.785 27.406 hybrid contribution -0.033 1.351 -0.203 1.366 sum 4.020 -25.610 -2.987 26.096 Atomic orbital electron populations 1.69975 1.06109 1.27001 1.49677 1.24993 0.94913 0.99411 0.94890 0.86480 0.79741 0.82895 0.78232 1.20483 1.21044 1.19744 1.20964 0.93063 0.90176 1.52277 0.92328 1.19130 0.94177 0.89007 0.98877 1.23364 0.97117 0.80599 0.99819 1.86167 1.36552 1.13165 1.86841 1.18801 0.89920 0.87071 0.92689 1.21432 0.93071 1.00039 1.09356 1.20813 0.99647 0.91303 0.96445 1.21031 0.92606 0.98748 1.06405 1.17274 0.91662 0.83169 1.00077 1.43332 1.27527 1.08739 1.51035 1.19057 0.85522 0.83178 0.77768 1.90744 1.19640 1.81597 1.46072 1.21522 0.93138 0.91935 1.14834 1.19139 0.87926 0.77103 0.81889 1.43778 1.13147 1.64201 1.19621 1.90795 1.60974 1.47027 1.41532 1.23104 1.02733 0.94891 0.94812 1.23157 1.02495 0.94930 0.95603 1.19996 1.00073 0.88928 1.11600 0.92688 0.95404 0.95383 0.92995 0.92962 0.84940 0.85620 0.84667 0.75172 0.76507 0.75985 0.86969 0.86464 0.87198 0.86060 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.06 1.37 4.68 37.16 0.17 1.54 16 11 O -0.31 -6.33 10.13 -19.44 -0.20 -6.52 16 12 C 0.16 2.79 6.68 -39.24 -0.26 2.52 16 13 C -0.22 -3.40 9.04 -39.40 -0.36 -3.75 16 14 C -0.06 -0.86 10.03 -39.63 -0.40 -1.25 16 15 C -0.17 -2.29 8.70 -39.37 -0.34 -2.63 16 16 C 0.17 2.29 6.30 -83.72 -0.53 1.76 16 17 N -0.66 -7.04 5.20 -9.87 -0.05 -7.09 16 18 C 0.56 5.78 7.21 -10.98 -0.08 5.70 16 19 O -0.51 -6.51 13.68 5.55 0.08 -6.43 16 20 C -0.21 -1.63 2.39 -156.81 -0.37 -2.00 16 21 C 0.56 4.67 6.68 -10.98 -0.07 4.59 16 22 N -0.84 -4.73 8.87 31.22 0.28 -4.45 16 23 O -0.53 -6.19 17.52 5.56 0.10 -6.09 16 24 C -0.12 -0.75 9.76 -26.73 -0.26 -1.01 16 25 C -0.12 -0.72 9.75 -26.74 -0.26 -0.98 16 26 C -0.19 -2.74 9.90 -39.25 -0.39 -3.13 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 31 H 0.05 1.04 7.67 -51.93 -0.40 0.65 16 32 H 0.13 1.99 6.29 -52.49 -0.33 1.66 16 33 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.14 1.81 6.20 -52.48 -0.33 1.48 16 35 H 0.41 3.77 8.29 -40.82 -0.34 3.44 16 36 H 0.41 1.69 8.84 -40.82 -0.36 1.33 16 37 H 0.41 1.86 8.93 -40.82 -0.36 1.49 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.12 0.72 7.98 -51.93 -0.41 0.30 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.12 0.74 7.67 -51.93 -0.40 0.34 16 42 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -33.64 364.82 -7.70 -41.34 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.41 Total: 4.57 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.71 Total: -11.38 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.96 Total: -37.09 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.02 Total: -19.05 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.64 -7.70 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609459556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.332 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds