Wall clock time and date at job start Tue Mar 31 2020 12:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99795 * 2 1 4 4 H 1.48503 * 109.46842 * 270.00267 * 3 2 1 5 5 H 1.48500 * 109.47238 * 30.00184 * 3 2 1 6 6 H 1.48494 * 109.47243 * 150.00310 * 3 2 1 7 7 C 1.37874 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00234 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47208 * 180.02562 * 9 7 2 11 11 O 1.42894 * 109.47142 * 180.02562 * 10 9 7 12 12 C 1.35905 * 116.99915 * 180.02562 * 11 10 9 13 13 C 1.38809 * 120.01739 * 359.72186 * 12 11 10 14 14 C 1.38170 * 120.07924 * 179.74451 * 13 12 11 15 15 C 1.38165 * 120.12746 * 0.51122 * 14 13 12 16 16 C 1.38889 * 120.04043 * 359.76495 * 15 14 13 17 17 N 1.39918 * 120.04544 * 179.97438 * 16 15 14 18 18 C 1.34774 * 119.99968 * 324.71423 * 17 16 15 19 19 O 1.21293 * 120.00241 * 5.72080 * 18 17 16 20 20 C 1.50705 * 120.00280 * 185.72279 * 18 17 16 21 21 C 1.50704 * 115.54461 * 37.05487 * 20 18 17 22 22 N 1.34774 * 120.00154 * 64.59602 * 21 20 18 23 23 O 1.21276 * 119.99880 * 244.58698 * 21 20 18 24 24 C 1.52998 * 117.49880 * 251.35360 * 20 18 17 25 25 C 1.52991 * 117.50312 * 182.72727 * 20 18 17 26 26 C 1.38580 * 120.01945 * 180.02562 * 12 11 10 27 27 H 0.96996 * 119.99817 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47213 * 60.00390 * 9 7 2 29 29 H 1.09003 * 109.47196 * 300.00318 * 9 7 2 30 30 H 1.09003 * 109.46952 * 300.00038 * 10 9 7 31 31 H 1.08992 * 109.47191 * 59.99526 * 10 9 7 32 32 H 1.08001 * 119.95941 * 359.97438 * 13 12 11 33 33 H 1.08004 * 119.93447 * 180.23138 * 14 13 12 34 34 H 1.08004 * 119.97932 * 179.74166 * 15 14 13 35 35 H 0.96998 * 120.00322 * 144.70442 * 17 16 15 36 36 H 0.97004 * 119.99623 * 6.71695 * 22 21 20 37 37 H 0.97001 * 120.00392 * 186.72470 * 22 21 20 38 38 H 1.09001 * 117.49895 * 359.97438 * 24 20 18 39 39 H 1.09001 * 117.49648 * 145.01835 * 24 20 18 40 40 H 1.08998 * 117.50229 * 214.98408 * 25 20 18 41 41 H 1.09001 * 117.50016 * 359.97438 * 25 20 18 42 42 H 1.08003 * 120.06406 * 359.96934 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5310 -4.8995 -0.0011 12 6 2.2712 -6.0393 -0.0007 13 6 3.6574 -5.9671 -0.0055 14 6 4.4112 -7.1250 0.0003 15 6 3.7881 -8.3582 0.0002 16 6 2.4014 -8.4365 -0.0007 17 7 1.7702 -9.6852 -0.0013 18 6 2.3170 -10.7163 -0.6753 19 8 3.4062 -10.5922 -1.1944 20 6 1.5752 -12.0236 -0.7841 21 6 0.0803 -11.9116 -0.9390 22 7 -0.4419 -11.3377 -2.0409 23 8 -0.6527 -12.3380 -0.0720 24 6 2.1161 -13.2114 0.0141 25 6 2.2759 -13.1755 -1.5071 26 6 1.6425 -7.2743 -0.0018 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6043 0.8893 32 1 4.1473 -5.0046 -0.0100 33 1 5.4896 -7.0661 0.0003 34 1 4.3796 -9.2618 0.0006 35 1 0.9392 -9.8089 0.4835 36 1 0.1372 -11.0851 -2.7770 37 1 -1.3969 -11.1770 -2.0979 38 1 3.0089 -13.0475 0.6177 39 1 1.3908 -13.9121 0.4276 40 1 1.6558 -13.8526 -2.0945 41 1 3.2734 -12.9878 -1.9044 42 1 0.5640 -7.3324 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609459556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:48 Heat of formation + Delta-G solvation = -88.797099 kcal Electronic energy + Delta-G solvation = -25306.535798 eV Core-core repulsion = 21444.506541 eV Total energy + Delta-G solvation = -3862.029257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20835 -41.08187 -40.20190 -38.59585 -36.97455 -35.82889 -35.39448 -34.70328 -32.61643 -31.22777 -30.30624 -27.17194 -26.69126 -24.31475 -23.83402 -23.49344 -23.16785 -21.98465 -20.77870 -19.60480 -19.45233 -18.38789 -18.10118 -17.34265 -17.17379 -16.98022 -16.95218 -16.66430 -16.43442 -16.17720 -15.82577 -15.50933 -15.14202 -14.64240 -14.46334 -14.33998 -14.29929 -14.18480 -13.31853 -13.27252 -12.98133 -12.71859 -12.61852 -12.54893 -12.22906 -12.14372 -11.80783 -11.75986 -11.58628 -11.42502 -11.36553 -11.25658 -10.90334 -10.80623 -10.61752 -9.55054 -9.07646 -8.26574 -6.39941 0.12411 0.43575 1.15542 1.26231 1.41498 1.43444 1.54501 1.65713 2.22663 2.28933 2.51715 2.67305 2.78405 3.08121 3.35644 3.53884 3.67286 3.79905 3.84734 4.12592 4.16668 4.22997 4.28446 4.38953 4.49813 4.54211 4.61094 4.65101 4.75454 4.84846 5.09757 5.15604 5.18949 5.31571 5.36809 5.47591 5.47676 5.67476 5.72184 5.83316 6.07371 6.13980 6.22761 6.50623 6.75004 6.80509 7.11050 7.30213 8.86475 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026404 B = 0.002185 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.173974 B =12814.021478 C =13585.911636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.084 3.916 11 O -0.337 6.337 12 C 0.132 3.868 13 C -0.227 4.227 14 C -0.057 4.057 15 C -0.167 4.167 16 C 0.177 3.823 17 N -0.657 5.657 18 C 0.563 3.437 19 O -0.530 6.530 20 C -0.217 4.217 21 C 0.559 3.441 22 N -0.830 5.830 23 O -0.565 6.565 24 C -0.115 4.115 25 C -0.107 4.107 26 C -0.188 4.188 27 H 0.267 0.733 28 H -0.001 1.001 29 H -0.001 1.001 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.419 0.581 36 H 0.415 0.585 37 H 0.415 0.585 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 -27.931 -3.490 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.583 4.583 8 H 0.090 0.910 9 C -0.010 4.010 10 C 0.009 3.991 11 O -0.251 6.251 12 C 0.086 3.914 13 C -0.247 4.247 14 C -0.076 4.076 15 C -0.187 4.187 16 C 0.082 3.918 17 N -0.302 5.302 18 C 0.351 3.649 19 O -0.406 6.406 20 C -0.224 4.224 21 C 0.342 3.658 22 N -0.393 5.393 23 O -0.443 6.443 24 C -0.152 4.152 25 C -0.144 4.144 26 C -0.209 4.209 27 H 0.075 0.925 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.173 0.827 34 H 0.160 0.840 35 H 0.257 0.743 36 H 0.245 0.755 37 H 0.247 0.753 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.894 -28.065 -3.251 28.861 hybrid contribution -0.620 1.522 -0.094 1.646 sum 5.274 -26.544 -3.345 27.269 Atomic orbital electron populations 1.70118 1.08026 1.28197 1.50693 1.26034 0.95818 1.03667 0.94221 0.85297 0.78598 0.77610 0.78640 1.19576 1.20760 1.18295 1.21400 0.93868 0.90986 1.52001 0.91037 1.18971 0.94575 0.91351 0.96056 1.22909 0.95429 0.79932 1.00797 1.86081 1.37354 1.13654 1.88016 1.19083 0.90795 0.86468 0.95074 1.21531 0.92453 1.00979 1.09702 1.21111 1.01049 0.90401 0.94995 1.21245 0.92754 0.99127 1.05615 1.17313 0.91746 0.83745 0.98953 1.43348 1.27729 1.07974 1.51149 1.19401 0.85221 0.83543 0.76782 1.90729 1.20796 1.82071 1.46973 1.21425 0.92628 0.91102 1.17215 1.19197 0.87924 0.76786 0.81862 1.43714 1.13746 1.62782 1.19088 1.90783 1.61744 1.48909 1.42911 1.23211 1.02775 0.93739 0.95489 1.23282 1.02396 0.93369 0.95395 1.20094 1.00613 0.88719 1.11499 0.92471 0.98284 0.98274 0.91939 0.91882 0.84712 0.82707 0.83999 0.74301 0.75462 0.75261 0.86491 0.86103 0.85270 0.86092 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.98 43.16 29.54 68.60 2.03 45.19 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.03 1.49 5.34 29.85 0.16 1.65 16 10 C 0.08 3.57 4.68 71.98 0.34 3.91 16 11 O -0.34 -13.92 10.13 -92.48 -0.94 -14.86 16 12 C 0.13 4.52 6.68 22.49 0.15 4.67 16 13 C -0.23 -6.81 9.04 22.39 0.20 -6.61 16 14 C -0.06 -1.43 10.03 22.24 0.22 -1.20 16 15 C -0.17 -4.26 8.70 22.41 0.20 -4.07 16 16 C 0.18 4.51 6.30 38.14 0.24 4.75 16 17 N -0.66 -13.16 5.20 -303.54 -1.58 -14.74 16 18 C 0.56 10.76 7.21 87.66 0.63 11.40 16 19 O -0.53 -12.69 13.68 -3.07 -0.04 -12.73 16 20 C -0.22 -3.03 2.39 -53.68 -0.13 -3.16 16 21 C 0.56 8.63 6.68 87.66 0.59 9.22 16 22 N -0.83 -8.10 8.87 -173.54 -1.54 -9.64 16 23 O -0.56 -12.80 17.52 -3.02 -0.05 -12.85 16 24 C -0.11 -1.25 9.76 30.59 0.30 -0.95 16 25 C -0.11 -0.98 9.75 30.59 0.30 -0.68 16 26 C -0.19 -5.52 9.90 22.49 0.22 -5.29 16 27 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.06 2.50 7.65 -2.39 -0.02 2.49 16 31 H 0.06 2.52 7.67 -2.39 -0.02 2.51 16 32 H 0.14 3.90 6.29 -2.91 -0.02 3.89 16 33 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.14 3.49 6.20 -2.91 -0.02 3.47 16 35 H 0.42 7.27 8.29 -92.71 -0.77 6.50 16 36 H 0.41 2.74 8.84 -92.70 -0.82 1.92 16 37 H 0.41 3.26 8.93 -92.71 -0.83 2.43 16 38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 1.27 7.98 -2.39 -0.02 1.25 16 40 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 1.19 7.67 -2.39 -0.02 1.17 16 42 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -73.30 364.82 0.95 -72.35 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -1.32 Total: 19.31 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 4.11 Total: -16.00 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -2.83 Total: -80.41 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -1.03 Total: -40.44 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -73.30 0.95 -72.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609459556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.448 kcal (2) G-P(sol) polarization free energy of solvation -73.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds