Wall clock time and date at job start Tue Mar 31 2020 13:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99843 * 2 1 4 4 C 1.52998 * 109.47071 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46936 * 64.99859 * 4 3 2 6 6 C 1.46493 * 120.00067 * 274.86625 * 5 4 3 7 7 C 1.50696 * 109.47385 * 270.00115 * 6 5 4 8 8 H 1.07996 * 119.99942 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00244 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99723 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00245 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47100 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47130 * 120.00064 * 11 9 7 14 14 H 1.48501 * 109.47279 * 239.99672 * 11 9 7 15 15 C 1.34775 * 119.99557 * 94.87206 * 5 4 3 16 16 O 1.21610 * 119.99885 * 185.57743 * 15 5 4 17 17 C 1.47433 * 120.00482 * 5.57195 * 15 5 4 18 18 C 1.39360 * 120.29720 * 55.00991 * 17 15 5 19 19 C 1.38183 * 120.24605 * 179.74094 * 18 17 15 20 20 C 1.38219 * 120.66832 * 0.25948 * 19 18 17 21 21 C 1.38577 * 120.21811 * 359.97438 * 20 19 18 22 22 O 1.35162 * 133.88104 * 180.02562 * 21 20 19 23 23 C 1.34140 * 108.10692 * 179.97438 * 22 21 20 24 24 C 1.50705 * 124.88342 * 180.02562 * 23 22 21 25 25 N 1.30093 * 110.23749 * 0.02562 * 23 22 21 26 26 C 1.35578 * 108.83699 * 359.97438 * 25 23 22 27 27 H 1.08994 * 109.47165 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47419 * 300.00166 * 1 2 3 29 29 H 1.09008 * 109.47204 * 60.00165 * 1 2 3 30 30 H 1.09006 * 109.46840 * 59.99940 * 3 2 1 31 31 H 1.09000 * 109.46931 * 300.00145 * 3 2 1 32 32 H 1.09001 * 109.47028 * 305.00040 * 4 3 2 33 33 H 1.09003 * 109.47080 * 184.99923 * 4 3 2 34 34 H 1.08999 * 109.47223 * 30.00652 * 6 5 4 35 35 H 1.09006 * 109.47025 * 150.00313 * 6 5 4 36 36 H 0.97004 * 119.99728 * 179.97438 * 10 9 7 37 37 H 1.08007 * 119.87477 * 0.02562 * 18 17 15 38 38 H 1.07999 * 119.66483 * 180.27456 * 19 18 17 39 39 H 1.08002 * 119.88572 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.46373 * 270.00050 * 24 23 22 41 41 H 1.08994 * 109.46790 * 29.99373 * 24 23 22 42 42 H 1.08999 * 109.47181 * 150.00133 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0042 -0.8954 -1.3748 7 6 5.3511 -1.4113 -0.9381 8 1 6.1105 -0.7211 -0.6015 9 6 5.6140 -2.7644 -0.9683 10 7 4.6891 -3.6050 -1.3777 11 14 7.2833 -3.4039 -0.4263 12 1 8.1397 -2.2635 -0.0122 13 1 7.1094 -4.3332 0.7189 14 1 7.9277 -4.1236 -1.5542 15 6 4.3572 1.3358 -2.2882 16 8 4.6262 0.8258 -3.3589 17 6 4.4474 2.7983 -2.1250 18 6 5.2310 3.3455 -1.1108 19 6 5.3190 4.7165 -0.9621 20 6 4.6300 5.5632 -1.8099 21 6 3.8401 5.0443 -2.8233 22 8 3.0678 5.5966 -3.7853 23 6 2.5223 4.6035 -4.5033 24 6 1.5935 4.7962 -5.6744 25 7 2.9104 3.4501 -4.0435 26 6 3.7386 3.6550 -2.9899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8427 33 1 3.9784 2.1767 0.0902 34 1 3.2275 -1.3283 -0.7444 35 1 3.8272 -1.1753 -2.4133 36 1 4.8741 -4.5570 -1.3992 37 1 5.7752 2.6957 -0.4414 38 1 5.9326 5.1306 -0.1757 39 1 4.7075 6.6328 -1.6820 40 1 0.5631 4.8251 -5.3198 41 1 1.8315 5.7339 -6.1763 42 1 1.7140 3.9688 -6.3737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619367125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:26 Heat of formation + Delta-G solvation = -28.858437 kcal Electronic energy + Delta-G solvation = -27138.879044 eV Core-core repulsion = 23279.448923 eV Total energy + Delta-G solvation = -3859.430121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.31441 -39.48988 -37.65833 -37.20164 -34.96602 -34.67406 -32.65364 -31.76008 -30.92369 -29.50240 -28.24267 -27.01593 -25.87775 -23.92356 -23.30477 -22.55966 -22.08292 -21.55157 -18.94340 -18.16819 -17.08248 -16.93163 -16.47494 -16.31638 -16.06562 -15.59123 -15.31166 -15.00212 -14.66642 -14.24801 -14.12672 -13.81356 -13.53107 -13.46236 -12.97750 -12.89792 -12.54724 -12.35937 -12.22840 -11.99940 -11.77127 -11.59536 -11.53125 -11.30436 -11.18607 -10.84489 -10.79079 -10.50676 -10.35198 -10.08052 -9.51568 -9.36311 -9.00274 -8.78072 -8.44073 -8.30521 -7.56049 -5.92885 -3.97210 0.47032 1.07177 2.36470 2.37752 3.24197 3.35815 3.42969 3.46396 3.66934 3.72854 3.90504 4.14953 4.47088 4.55430 4.72865 4.89695 4.91468 5.04666 5.11424 5.14648 5.26561 5.36531 5.41225 5.47209 5.49882 5.55072 5.61862 5.63966 5.72938 5.79791 5.87126 5.93125 6.08244 6.16009 6.20922 6.27718 6.51131 7.31206 7.48083 7.60881 7.63129 7.68988 8.05468 8.36245 8.49179 8.97633 9.13851 9.66269 11.15149 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.004292 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.159063 B = 6522.137791 C = 7123.389909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.047 3.953 4 C 0.103 3.897 5 N -0.581 5.581 6 C 0.248 3.752 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.550 3.450 16 O -0.518 6.518 17 C -0.051 4.051 18 C -0.097 4.097 19 C -0.095 4.095 20 C -0.086 4.086 21 C 0.002 3.998 22 O -0.217 6.217 23 C 0.240 3.760 24 C -0.062 4.062 25 N -0.461 5.461 26 C 0.059 3.941 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 20.963 1.393 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.031 4.031 4 C -0.022 4.022 5 N -0.312 5.312 6 C 0.129 3.871 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.335 3.665 16 O -0.395 6.395 17 C -0.055 4.055 18 C -0.117 4.117 19 C -0.113 4.113 20 C -0.105 4.105 21 C -0.048 4.048 22 O -0.109 6.109 23 C 0.029 3.971 24 C -0.119 4.119 25 N -0.190 5.190 26 C -0.054 4.054 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.019 19.688 0.550 20.909 hybrid contribution 0.855 0.508 0.587 1.155 sum -6.164 20.196 1.137 21.146 Atomic orbital electron populations 1.22692 0.82165 1.02572 0.99002 1.88114 1.18658 1.26790 1.95112 1.23046 0.95261 0.85458 0.99350 1.21758 0.91568 0.99420 0.89444 1.48110 1.62427 1.09500 1.11123 1.19394 0.97286 0.71294 0.99099 1.21500 0.99049 0.92091 1.43851 0.92560 1.24913 0.96985 0.96734 0.95411 1.69968 1.33223 1.02730 1.47161 0.86486 0.84170 0.78798 0.78178 1.19860 1.21037 1.20995 1.17852 0.79045 0.84804 0.84836 1.90795 1.48948 1.73908 1.25813 1.19606 0.97050 0.94735 0.94152 1.21324 0.98192 0.95547 0.96636 1.20934 0.98858 0.92534 0.98965 1.19907 0.96861 1.00753 0.92999 1.20222 0.98357 0.92399 0.93858 1.84457 1.51636 1.37385 1.37430 1.26626 0.95371 0.79993 0.95099 1.20404 0.95677 1.05219 0.90602 1.70675 1.13143 1.25067 1.10078 1.19518 0.98918 0.91392 0.95597 0.89710 0.94789 0.94688 0.93200 0.93978 0.88904 0.89480 0.93049 0.94128 0.92917 0.83479 0.83648 0.84620 0.88411 0.88990 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.90 9.09 -35.23 -0.32 -7.22 16 3 C 0.05 0.76 6.28 37.16 0.23 0.99 16 4 C 0.10 1.79 5.68 -4.04 -0.02 1.77 16 5 N -0.58 -13.23 2.44 -176.33 -0.43 -13.66 16 6 C 0.25 6.86 5.02 -5.20 -0.03 6.84 16 7 C -0.53 -15.32 9.39 -34.44 -0.32 -15.64 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 11 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.55 12.82 7.14 -12.52 -0.09 12.73 16 16 O -0.52 -14.58 16.64 5.27 0.09 -14.49 16 17 C -0.05 -0.94 4.92 -104.74 -0.52 -1.46 16 18 C -0.10 -1.35 7.47 -39.18 -0.29 -1.65 16 19 C -0.09 -0.98 10.00 -39.61 -0.40 -1.38 16 20 C -0.09 -0.95 10.05 -39.46 -0.40 -1.35 16 21 C 0.00 0.03 7.42 -38.69 -0.29 -0.26 16 22 O -0.22 -2.94 10.77 3.72 0.04 -2.90 16 23 C 0.24 3.26 8.24 -13.01 -0.11 3.15 16 24 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 25 N -0.46 -8.37 11.32 -8.48 -0.10 -8.47 16 26 C 0.06 1.05 6.97 -84.44 -0.59 0.46 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.64 8.11 -51.93 -0.42 1.22 16 33 H 0.09 1.24 4.42 -51.93 -0.23 1.01 16 34 H 0.05 1.47 6.68 -51.93 -0.35 1.12 16 35 H 0.04 1.29 7.35 -51.93 -0.38 0.91 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.15 1.90 7.57 -52.48 -0.40 1.50 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -39.01 361.47 -6.52 -45.54 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.55 Total: -2.28 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.42 Total: 7.40 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.21 Total: -48.75 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.19 Total: -24.61 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.01 -6.52 -45.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619367125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.677 kcal (2) G-P(sol) polarization free energy of solvation -39.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds