Wall clock time and date at job start Tue Mar 31 2020 13:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99843 * 2 1 4 4 C 1.52998 * 109.47071 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46936 * 64.99859 * 4 3 2 6 6 C 1.46493 * 120.00067 * 274.86625 * 5 4 3 7 7 C 1.50696 * 109.47385 * 270.00115 * 6 5 4 8 8 H 1.07996 * 119.99942 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00244 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99723 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00245 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47100 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47130 * 120.00064 * 11 9 7 14 14 H 1.48501 * 109.47279 * 239.99672 * 11 9 7 15 15 C 1.34775 * 119.99557 * 94.87206 * 5 4 3 16 16 O 1.21610 * 119.99885 * 185.57743 * 15 5 4 17 17 C 1.47433 * 120.00482 * 5.57195 * 15 5 4 18 18 C 1.39360 * 120.29720 * 55.00991 * 17 15 5 19 19 C 1.38183 * 120.24605 * 179.74094 * 18 17 15 20 20 C 1.38219 * 120.66832 * 0.25948 * 19 18 17 21 21 C 1.38577 * 120.21811 * 359.97438 * 20 19 18 22 22 O 1.35162 * 133.88104 * 180.02562 * 21 20 19 23 23 C 1.34140 * 108.10692 * 179.97438 * 22 21 20 24 24 C 1.50705 * 124.88342 * 180.02562 * 23 22 21 25 25 N 1.30093 * 110.23749 * 0.02562 * 23 22 21 26 26 C 1.35578 * 108.83699 * 359.97438 * 25 23 22 27 27 H 1.08994 * 109.47165 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47419 * 300.00166 * 1 2 3 29 29 H 1.09008 * 109.47204 * 60.00165 * 1 2 3 30 30 H 1.09006 * 109.46840 * 59.99940 * 3 2 1 31 31 H 1.09000 * 109.46931 * 300.00145 * 3 2 1 32 32 H 1.09001 * 109.47028 * 305.00040 * 4 3 2 33 33 H 1.09003 * 109.47080 * 184.99923 * 4 3 2 34 34 H 1.08999 * 109.47223 * 30.00652 * 6 5 4 35 35 H 1.09006 * 109.47025 * 150.00313 * 6 5 4 36 36 H 0.97004 * 119.99728 * 179.97438 * 10 9 7 37 37 H 1.08007 * 119.87477 * 0.02562 * 18 17 15 38 38 H 1.07999 * 119.66483 * 180.27456 * 19 18 17 39 39 H 1.08002 * 119.88572 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.46373 * 270.00050 * 24 23 22 41 41 H 1.08994 * 109.46790 * 29.99373 * 24 23 22 42 42 H 1.08999 * 109.47181 * 150.00133 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0042 -0.8954 -1.3748 7 6 5.3511 -1.4113 -0.9381 8 1 6.1105 -0.7211 -0.6015 9 6 5.6140 -2.7644 -0.9683 10 7 4.6891 -3.6050 -1.3777 11 14 7.2833 -3.4039 -0.4263 12 1 8.1397 -2.2635 -0.0122 13 1 7.1094 -4.3332 0.7189 14 1 7.9277 -4.1236 -1.5542 15 6 4.3572 1.3358 -2.2882 16 8 4.6262 0.8258 -3.3589 17 6 4.4474 2.7983 -2.1250 18 6 5.2310 3.3455 -1.1108 19 6 5.3190 4.7165 -0.9621 20 6 4.6300 5.5632 -1.8099 21 6 3.8401 5.0443 -2.8233 22 8 3.0678 5.5966 -3.7853 23 6 2.5223 4.6035 -4.5033 24 6 1.5935 4.7962 -5.6744 25 7 2.9104 3.4501 -4.0435 26 6 3.7386 3.6550 -2.9899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8427 33 1 3.9784 2.1767 0.0902 34 1 3.2275 -1.3283 -0.7444 35 1 3.8272 -1.1753 -2.4133 36 1 4.8741 -4.5570 -1.3992 37 1 5.7752 2.6957 -0.4414 38 1 5.9326 5.1306 -0.1757 39 1 4.7075 6.6328 -1.6820 40 1 0.5631 4.8251 -5.3198 41 1 1.8315 5.7339 -6.1763 42 1 1.7140 3.9688 -6.3737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619367125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:25 Heat of formation + Delta-G solvation = -59.888180 kcal Electronic energy + Delta-G solvation = -27140.224595 eV Core-core repulsion = 23279.448923 eV Total energy + Delta-G solvation = -3860.775672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.36868 -41.07383 -38.91264 -38.58345 -36.61672 -35.93845 -34.80975 -32.62503 -32.20612 -31.07634 -29.28266 -28.84309 -27.17523 -25.60151 -24.60475 -23.97189 -23.36874 -22.75453 -20.42512 -19.31281 -18.61910 -18.37751 -18.03566 -17.76726 -17.42434 -17.04946 -16.63739 -16.47672 -16.08036 -16.01073 -15.46656 -14.90513 -14.72872 -14.60531 -14.20382 -14.08656 -13.77337 -13.69922 -13.60932 -13.26051 -13.13444 -13.03162 -12.96866 -12.86145 -12.69505 -12.58117 -12.31264 -12.18781 -12.01060 -11.67725 -11.64755 -10.79111 -10.65954 -10.58639 -9.89756 -9.57759 -9.41109 -8.18879 -6.34543 -0.59223 0.02206 1.32609 1.37060 1.40326 1.41148 1.52236 1.72359 2.17383 2.41273 2.53801 2.79896 2.90470 3.10741 3.30920 3.74027 3.80006 4.01892 4.05619 4.08001 4.19699 4.24359 4.32148 4.40965 4.46875 4.51090 4.56602 4.60012 4.70533 4.74870 4.78685 4.84897 4.93856 5.11169 5.17964 5.19922 5.25975 5.28204 5.55591 5.58489 5.85264 6.08459 6.24973 6.55019 6.68071 6.75399 7.24078 7.39986 8.89326 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.004292 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.159063 B = 6522.137791 C = 7123.389909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.051 3.949 4 C 0.098 3.902 5 N -0.585 5.585 6 C 0.270 3.730 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.004 3.996 10 N -0.930 5.930 11 Si 0.973 3.027 12 H -0.261 1.261 13 H -0.268 1.268 14 H -0.284 1.284 15 C 0.545 3.455 16 O -0.590 6.590 17 C -0.095 4.095 18 C -0.087 4.087 19 C -0.076 4.076 20 C -0.060 4.060 21 C -0.010 4.010 22 O -0.211 6.211 23 C 0.254 3.746 24 C -0.062 4.062 25 N -0.532 5.532 26 C 0.028 3.972 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.035 0.965 35 H -0.019 1.019 36 H 0.266 0.734 37 H 0.155 0.845 38 H 0.201 0.799 39 H 0.183 0.817 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 24.930 3.791 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.027 4.027 4 C -0.024 4.024 5 N -0.314 5.314 6 C 0.149 3.851 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.194 4.194 10 N -0.570 5.570 11 Si 0.797 3.203 12 H -0.184 1.184 13 H -0.193 1.193 14 H -0.210 1.210 15 C 0.334 3.666 16 O -0.471 6.471 17 C -0.100 4.100 18 C -0.107 4.107 19 C -0.094 4.094 20 C -0.078 4.078 21 C -0.060 4.060 22 O -0.103 6.103 23 C 0.044 3.956 24 C -0.118 4.118 25 N -0.262 5.262 26 C -0.085 4.085 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.142 0.858 34 H 0.053 0.947 35 H -0.001 1.001 36 H 0.075 0.925 37 H 0.173 0.827 38 H 0.218 0.782 39 H 0.200 0.800 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.036 23.704 2.998 24.644 hybrid contribution 0.441 -0.623 -0.203 0.790 sum -5.595 23.081 2.796 23.914 Atomic orbital electron populations 1.22860 0.80098 1.03224 1.00587 1.88053 1.21176 1.28552 1.95438 1.23075 0.94021 0.84829 1.00744 1.22113 0.93001 1.00716 0.86560 1.48055 1.62364 1.07694 1.13283 1.18740 0.96626 0.74845 0.94888 1.21769 0.99487 0.92738 1.44142 0.92226 1.25950 1.01488 0.96890 0.95110 1.70118 1.35724 1.03232 1.47943 0.85288 0.78579 0.78474 0.77952 1.18436 1.19335 1.20983 1.18703 0.77113 0.87274 0.83544 1.90721 1.52018 1.75944 1.28453 1.19249 1.01637 0.91057 0.98018 1.21572 0.96438 0.97723 0.94927 1.21488 0.98104 0.90340 0.99424 1.20596 0.93732 1.03174 0.90336 1.20668 0.99393 0.90930 0.95056 1.84473 1.51514 1.37013 1.37294 1.27642 0.94016 0.79064 0.94895 1.20753 0.95610 1.06715 0.88749 1.70650 1.15709 1.27762 1.12094 1.19760 0.99605 0.93233 0.95875 0.89699 0.91494 0.94629 0.88607 0.95355 0.89257 0.85751 0.94683 1.00051 0.92537 0.82712 0.78211 0.79985 0.86050 0.85690 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.41 -16.02 9.09 -148.98 -1.35 -17.37 16 3 C 0.05 1.64 6.28 71.98 0.45 2.09 16 4 C 0.10 3.48 5.68 86.38 0.49 3.97 16 5 N -0.58 -28.40 2.44 -830.04 -2.03 -30.43 16 6 C 0.27 16.19 5.02 85.63 0.43 16.62 16 7 C -0.54 -33.13 9.39 25.60 0.24 -32.89 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.00 0.25 5.46 84.65 0.46 0.71 16 10 N -0.93 -59.67 13.29 21.45 0.28 -59.39 16 11 Si 0.97 46.54 29.54 68.60 2.03 48.57 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 15 C 0.55 27.37 7.14 86.67 0.62 27.99 16 16 O -0.59 -36.56 16.64 -4.06 -0.07 -36.63 16 17 C -0.10 -3.60 4.92 -19.94 -0.10 -3.70 16 18 C -0.09 -2.24 7.47 22.53 0.17 -2.07 16 19 C -0.08 -1.18 10.00 22.25 0.22 -0.96 16 20 C -0.06 -1.02 10.05 22.35 0.22 -0.80 16 21 C -0.01 -0.28 7.42 22.85 0.17 -0.11 16 22 O -0.21 -5.33 10.77 -9.59 -0.10 -5.43 16 23 C 0.25 6.84 8.24 88.37 0.73 7.57 16 24 C -0.06 -0.87 10.51 71.24 0.75 -0.12 16 25 N -0.53 -20.35 11.32 -295.52 -3.35 -23.70 16 26 C 0.03 1.01 6.97 39.71 0.28 1.29 16 27 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.10 2.20 8.14 -2.38 -0.02 2.19 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 3.19 8.11 -2.39 -0.02 3.17 16 33 H 0.12 3.37 4.42 -2.39 -0.01 3.36 16 34 H 0.04 2.18 6.68 -2.39 -0.02 2.17 16 35 H -0.02 -1.32 7.35 -2.38 -0.02 -1.34 16 36 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.16 3.65 7.57 -2.91 -0.02 3.62 16 38 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -97.22 361.47 2.83 -94.39 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.04 Total: 8.33 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 6.38 Total: 21.66 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -5.09 Total: -113.51 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -1.53 Total: -59.43 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -97.22 2.83 -94.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619367125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.502 kcal (2) G-P(sol) polarization free energy of solvation -97.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds