Wall clock time and date at job start Tue Mar 31 2020 12:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 12 11 15 15 O 1.21282 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99819 * 359.96801 * 14 13 12 17 17 C 1.53004 * 109.46723 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47068 * 179.97438 * 17 16 14 19 19 O 1.21212 * 120.00037 * 0.02562 * 18 17 16 20 20 C 1.47549 * 120.00245 * 180.02562 * 18 17 16 21 21 C 1.39542 * 119.74337 * 180.02562 * 20 18 17 22 22 C 1.38565 * 119.03905 * 179.97438 * 21 20 18 23 23 C 1.38631 * 118.50554 * 359.97438 * 22 21 20 24 24 C 1.38656 * 119.38368 * 359.97438 * 23 22 21 25 25 N 1.31446 * 120.93231 * 359.73902 * 24 23 22 26 26 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 27 27 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 28 28 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 29 29 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 30 30 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 31 31 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 32 32 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 33 33 H 1.08995 * 109.47201 * 299.99171 * 16 14 13 34 34 H 1.08996 * 109.47240 * 59.99690 * 16 14 13 35 35 H 1.08995 * 109.47243 * 299.99927 * 17 16 14 36 36 H 1.09003 * 109.47257 * 60.00284 * 17 16 14 37 37 H 1.08004 * 120.48159 * 359.97438 * 21 20 18 38 38 H 1.08002 * 120.75136 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.30851 * 180.02562 * 23 22 21 40 40 H 1.08006 * 119.53662 * 179.97438 * 24 23 22 41 41 H 1.09002 * 110.36865 * 217.03325 * 26 13 12 42 42 H 1.08994 * 110.46657 * 94.75473 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6918 -6.1230 0.4044 15 8 2.5989 -6.4774 -0.3184 16 6 0.8249 -7.1508 1.0849 17 6 1.2978 -8.5535 0.6979 18 6 0.4313 -9.5814 1.3788 19 8 -0.4749 -9.2272 2.1017 20 6 0.6861 -11.0191 1.1657 21 6 -0.1199 -11.9662 1.7985 22 6 0.1321 -13.3124 1.5877 23 6 1.1798 -13.6664 0.7518 24 6 1.9396 -12.6720 0.1547 25 7 1.6765 -11.4017 0.3665 26 6 2.2259 -3.7031 -0.0012 27 1 -0.4850 0.8400 0.0004 28 1 -0.2788 -1.8355 -1.1497 29 1 1.0755 -2.3016 2.1726 30 1 -0.4922 -2.2572 1.3011 31 1 -0.5769 -4.5759 1.0886 32 1 0.5412 -4.5578 2.4790 33 1 0.8963 -7.0283 2.1656 34 1 -0.2106 -7.0175 0.7717 35 1 1.2261 -8.6758 -0.3828 36 1 2.3333 -8.6871 1.0108 37 1 -0.9283 -11.6546 2.4433 38 1 -0.4747 -14.0688 2.0632 39 1 1.4017 -14.7070 0.5667 40 1 2.7567 -12.9450 -0.4967 41 1 2.5186 -3.9536 -1.0209 42 1 3.1062 -3.4787 0.6010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000649029247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:37 Heat of formation + Delta-G solvation = -86.142489 kcal Electronic energy + Delta-G solvation = -25655.927633 eV Core-core repulsion = 21794.013488 eV Total energy + Delta-G solvation = -3861.914144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86265 -39.58280 -38.90753 -37.21863 -34.27028 -33.35284 -32.52965 -32.13288 -31.82005 -29.82552 -28.36337 -26.74191 -25.08395 -24.05585 -23.47013 -22.07592 -20.28582 -19.63333 -18.64577 -17.73485 -17.23241 -16.96264 -16.37417 -16.09679 -16.01052 -15.13508 -14.99710 -14.96839 -14.62314 -14.53730 -14.09221 -13.92063 -13.62354 -13.49529 -13.00277 -12.74955 -12.46451 -12.18404 -11.95390 -11.75555 -11.64850 -11.31996 -11.31110 -11.06489 -10.88130 -10.58491 -10.47372 -10.44999 -10.39802 -10.02959 -9.69725 -9.61838 -9.43940 -9.30140 -8.67451 -8.20349 -7.94228 -6.29706 -4.37324 0.11873 0.80141 1.99250 3.12749 3.20296 3.27551 3.29815 3.33817 3.44860 3.70456 4.08051 4.26625 4.37745 4.54845 4.59774 4.71636 4.87027 4.96557 5.13604 5.17897 5.23473 5.28361 5.57594 5.59732 5.65890 5.72626 5.77168 5.87901 5.96440 6.04617 6.08644 6.15390 6.32439 6.46723 6.68647 6.90801 6.99850 7.06506 7.31529 7.33799 7.51632 7.73947 7.99837 8.18515 8.63773 8.69396 9.31655 9.48786 10.78020 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.041255 B = 0.002219 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.547688 B =12614.197735 C =12991.284827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.139 4.139 12 C 0.099 3.901 13 N -0.606 5.606 14 C 0.523 3.477 15 O -0.556 6.556 16 C -0.129 4.129 17 C -0.134 4.134 18 C 0.413 3.587 19 O -0.443 6.443 20 C 0.048 3.952 21 C -0.117 4.117 22 C -0.087 4.087 23 C -0.148 4.148 24 C 0.096 3.904 25 N -0.439 5.439 26 C 0.119 3.881 27 H 0.269 0.731 28 H 0.385 0.615 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.071 0.929 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -23.338 4.908 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.178 4.178 12 C -0.023 4.023 13 N -0.339 5.339 14 C 0.311 3.689 15 O -0.436 6.436 16 C -0.169 4.169 17 C -0.172 4.172 18 C 0.289 3.711 19 O -0.315 6.315 20 C -0.088 4.088 21 C -0.137 4.137 22 C -0.113 4.113 23 C -0.168 4.168 24 C -0.065 4.065 25 N -0.150 5.150 26 C -0.003 4.003 27 H 0.079 0.921 28 H 0.237 0.763 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.182 0.818 41 H 0.089 0.911 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.682 -23.138 4.408 23.564 hybrid contribution -0.473 0.647 0.603 1.002 sum -1.155 -22.491 5.011 23.071 Atomic orbital electron populations 1.69562 1.05997 1.27742 1.50481 1.24999 0.95028 0.99584 0.93469 0.86394 0.79778 0.82312 0.78360 1.20388 1.21056 1.19697 1.21486 0.93793 0.90212 1.51783 0.91627 1.19591 0.86063 0.90839 0.82776 1.86102 1.50962 1.52760 1.49638 1.23203 1.03052 0.90144 1.01412 1.22169 0.90184 0.97057 0.92936 1.48604 1.33042 1.05029 1.47190 1.20087 0.84883 0.82094 0.81809 1.90664 1.33185 1.80117 1.39626 1.21452 1.00681 0.92645 1.02147 1.21596 1.00900 0.91420 1.03235 1.22509 0.82584 0.87896 0.78116 1.90537 1.27820 1.82613 1.30563 1.21811 0.94122 0.96315 0.96570 1.22344 0.99482 0.93263 0.98577 1.21649 0.96823 0.96117 0.96683 1.22480 0.95784 1.01593 0.96897 1.22939 0.98581 0.87448 0.97485 1.67714 1.15092 1.19765 1.12468 1.22375 0.94482 0.85358 0.98061 0.92075 0.76264 0.91358 0.89875 0.92294 0.92773 0.88749 0.88607 0.87011 0.87094 0.83594 0.84118 0.84160 0.81825 0.91102 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.13 10.79 55.43 0.60 -22.53 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 3 Si 0.90 20.17 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -13.91 8.25 -34.44 -0.28 -14.19 16 8 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 9 C 0.25 6.03 0.89 -89.62 -0.08 5.95 16 10 O -0.58 -15.15 13.18 -35.23 -0.46 -15.62 16 11 C -0.14 -3.00 5.64 -24.90 -0.14 -3.14 16 12 C 0.10 1.83 6.49 -3.06 -0.02 1.81 16 13 N -0.61 -12.23 3.33 -170.52 -0.57 -12.80 16 14 C 0.52 9.94 7.85 -10.99 -0.09 9.85 16 15 O -0.56 -12.11 16.24 5.56 0.09 -12.02 16 16 C -0.13 -1.89 4.18 -27.88 -0.12 -2.01 16 17 C -0.13 -1.77 4.47 -27.88 -0.12 -1.89 16 18 C 0.41 5.10 7.13 -30.51 -0.22 4.88 16 19 O -0.44 -6.14 15.95 5.62 0.09 -6.05 16 20 C 0.05 0.52 6.73 -83.12 -0.56 -0.04 16 21 C -0.12 -1.02 9.64 -38.97 -0.38 -1.39 16 22 C -0.09 -0.54 10.17 -39.32 -0.40 -0.94 16 23 C -0.15 -0.84 10.12 -39.28 -0.40 -1.23 16 24 C 0.10 0.72 11.18 -17.56 -0.20 0.53 16 25 N -0.44 -4.72 9.79 -9.88 -0.10 -4.81 16 26 C 0.12 2.70 6.08 -2.53 -0.02 2.68 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.39 10.05 6.93 45.56 0.32 10.37 16 29 H 0.07 1.46 8.03 -51.93 -0.42 1.05 16 30 H 0.08 1.87 7.85 -51.93 -0.41 1.46 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.10 1.36 8.10 -51.93 -0.42 0.94 16 35 H 0.11 1.53 8.10 -51.93 -0.42 1.10 16 36 H 0.11 1.47 8.10 -51.93 -0.42 1.05 16 37 H 0.15 1.17 7.64 -52.48 -0.40 0.76 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.07 1.71 8.04 -51.93 -0.42 1.29 16 42 H 0.07 1.54 8.01 -51.93 -0.42 1.13 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -30.90 359.66 -8.14 -39.04 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.08 Total: 11.62 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -3.11 Total: 2.60 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.07 Total: -40.14 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.28 Total: -33.69 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.90 -8.14 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.099 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds