Wall clock time and date at job start Tue Mar 31 2020 12:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 12 11 15 15 O 1.21282 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99819 * 359.96801 * 14 13 12 17 17 C 1.53004 * 109.46723 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47068 * 179.97438 * 17 16 14 19 19 O 1.21212 * 120.00037 * 0.02562 * 18 17 16 20 20 C 1.47549 * 120.00245 * 180.02562 * 18 17 16 21 21 C 1.39542 * 119.74337 * 180.02562 * 20 18 17 22 22 C 1.38565 * 119.03905 * 179.97438 * 21 20 18 23 23 C 1.38631 * 118.50554 * 359.97438 * 22 21 20 24 24 C 1.38656 * 119.38368 * 359.97438 * 23 22 21 25 25 N 1.31446 * 120.93231 * 359.73902 * 24 23 22 26 26 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 27 27 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 28 28 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 29 29 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 30 30 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 31 31 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 32 32 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 33 33 H 1.08995 * 109.47201 * 299.99171 * 16 14 13 34 34 H 1.08996 * 109.47240 * 59.99690 * 16 14 13 35 35 H 1.08995 * 109.47243 * 299.99927 * 17 16 14 36 36 H 1.09003 * 109.47257 * 60.00284 * 17 16 14 37 37 H 1.08004 * 120.48159 * 359.97438 * 21 20 18 38 38 H 1.08002 * 120.75136 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.30851 * 180.02562 * 23 22 21 40 40 H 1.08006 * 119.53662 * 179.97438 * 24 23 22 41 41 H 1.09002 * 110.36865 * 217.03325 * 26 13 12 42 42 H 1.08994 * 110.46657 * 94.75473 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6918 -6.1230 0.4044 15 8 2.5989 -6.4774 -0.3184 16 6 0.8249 -7.1508 1.0849 17 6 1.2978 -8.5535 0.6979 18 6 0.4313 -9.5814 1.3788 19 8 -0.4749 -9.2272 2.1017 20 6 0.6861 -11.0191 1.1657 21 6 -0.1199 -11.9662 1.7985 22 6 0.1321 -13.3124 1.5877 23 6 1.1798 -13.6664 0.7518 24 6 1.9396 -12.6720 0.1547 25 7 1.6765 -11.4017 0.3665 26 6 2.2259 -3.7031 -0.0012 27 1 -0.4850 0.8400 0.0004 28 1 -0.2788 -1.8355 -1.1497 29 1 1.0755 -2.3016 2.1726 30 1 -0.4922 -2.2572 1.3011 31 1 -0.5769 -4.5759 1.0886 32 1 0.5412 -4.5578 2.4790 33 1 0.8963 -7.0283 2.1656 34 1 -0.2106 -7.0175 0.7717 35 1 1.2261 -8.6758 -0.3828 36 1 2.3333 -8.6871 1.0108 37 1 -0.9283 -11.6546 2.4433 38 1 -0.4747 -14.0688 2.0632 39 1 1.4017 -14.7070 0.5667 40 1 2.7567 -12.9450 -0.4967 41 1 2.5186 -3.9536 -1.0209 42 1 3.1062 -3.4787 0.6010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000649029247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:37 Heat of formation + Delta-G solvation = -107.060697 kcal Electronic energy + Delta-G solvation = -25656.834714 eV Core-core repulsion = 21794.013488 eV Total energy + Delta-G solvation = -3862.821226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63351 -41.01936 -39.89400 -38.93742 -36.10128 -34.24980 -34.13683 -33.40430 -32.47713 -31.52761 -30.06676 -28.03135 -26.61066 -24.90678 -24.31645 -23.54722 -21.60613 -21.05462 -20.13226 -19.19296 -18.67243 -17.94352 -17.32650 -17.23086 -16.95490 -16.82050 -16.52994 -16.23239 -15.97455 -15.50081 -15.34148 -15.18669 -14.77791 -14.63571 -14.15940 -14.10379 -13.83176 -13.58777 -13.45914 -13.20501 -13.05997 -12.99899 -12.82221 -12.62208 -12.48061 -12.25464 -12.22129 -11.87071 -11.32974 -11.26488 -10.95452 -10.93777 -10.63454 -10.40120 -10.21520 -10.15334 -9.57943 -8.25256 -6.39814 -0.55750 0.26529 1.19467 1.42480 1.45417 1.54152 1.60820 2.00169 2.39821 2.70489 2.82664 2.99581 3.36100 3.59713 3.77239 3.90377 3.96173 4.03271 4.03989 4.07200 4.10161 4.20115 4.36303 4.37136 4.48418 4.58121 4.61105 4.73469 4.75458 4.80690 4.89722 4.97938 5.08710 5.15355 5.17669 5.28868 5.44174 5.52026 5.64006 5.77300 6.05244 6.18040 6.60349 6.65356 6.87426 7.12974 7.31410 7.45121 8.81197 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.041255 B = 0.002219 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.547688 B =12614.197735 C =12991.284827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.034 3.966 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.058 0.942 9 C 0.233 3.767 10 O -0.596 6.596 11 C -0.130 4.130 12 C 0.105 3.895 13 N -0.612 5.612 14 C 0.519 3.481 15 O -0.589 6.589 16 C -0.117 4.117 17 C -0.129 4.129 18 C 0.421 3.579 19 O -0.464 6.464 20 C 0.016 3.984 21 C -0.122 4.122 22 C -0.085 4.085 23 C -0.130 4.130 24 C 0.082 3.918 25 N -0.471 5.471 26 C 0.124 3.876 27 H 0.272 0.728 28 H 0.381 0.619 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.148 0.852 38 H 0.175 0.825 39 H 0.179 0.821 40 H 0.187 0.813 41 H 0.046 0.954 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 -25.538 6.042 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.167 4.167 3 Si 0.788 3.212 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.598 4.598 8 H 0.076 0.924 9 C 0.193 3.807 10 O -0.406 6.406 11 C -0.169 4.169 12 C -0.017 4.017 13 N -0.344 5.344 14 C 0.310 3.690 15 O -0.470 6.470 16 C -0.156 4.156 17 C -0.166 4.166 18 C 0.298 3.702 19 O -0.338 6.338 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.110 4.110 23 C -0.149 4.149 24 C -0.078 4.078 25 N -0.183 5.183 26 C 0.001 3.999 27 H 0.082 0.918 28 H 0.233 0.767 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.166 0.834 38 H 0.192 0.808 39 H 0.197 0.803 40 H 0.204 0.796 41 H 0.065 0.935 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.061 -25.350 5.555 25.973 hybrid contribution -0.318 1.222 0.183 1.276 sum -1.379 -24.128 5.738 24.839 Atomic orbital electron populations 1.69624 1.06729 1.28503 1.50163 1.25645 0.95865 1.02168 0.93024 0.85486 0.78732 0.78867 0.78088 1.20566 1.20292 1.19505 1.21708 0.93702 0.91567 1.52863 0.92423 1.19796 0.86425 0.90917 0.83598 1.86089 1.51151 1.52548 1.50826 1.23000 1.01769 0.92548 0.99585 1.22206 0.90191 0.94633 0.94628 1.48692 1.33220 1.05028 1.47426 1.20862 0.84773 0.82120 0.81251 1.90644 1.34780 1.80518 1.41086 1.21423 0.99888 0.91717 1.02620 1.21506 1.01092 0.91137 1.02886 1.22425 0.81729 0.88747 0.77272 1.90517 1.28582 1.83110 1.31608 1.21573 0.95883 0.95601 0.98767 1.22492 0.99143 0.94253 0.98323 1.22082 0.97077 0.95573 0.96317 1.22920 0.94188 1.03019 0.94806 1.23472 0.99516 0.86895 0.97926 1.67637 1.15658 1.21789 1.13257 1.22152 0.94696 0.86008 0.97058 0.91794 0.76739 0.91497 0.91022 0.91081 0.89219 0.86892 0.87724 0.87905 0.87429 0.83410 0.80790 0.80318 0.79626 0.93545 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.98 10.79 21.45 0.23 -46.75 16 2 C 0.03 1.74 5.30 84.65 0.45 2.19 16 3 Si 0.96 41.33 29.54 68.60 2.03 43.35 16 4 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.56 -29.61 8.25 25.60 0.21 -29.40 16 8 H 0.06 3.05 7.77 -2.91 -0.02 3.03 16 9 C 0.23 11.51 0.89 -10.15 -0.01 11.50 16 10 O -0.60 -31.61 13.18 -148.98 -1.96 -33.57 16 11 C -0.13 -5.57 5.64 31.78 0.18 -5.40 16 12 C 0.11 3.73 6.49 86.73 0.56 4.29 16 13 N -0.61 -24.51 3.33 -811.79 -2.70 -27.21 16 14 C 0.52 19.70 7.85 87.66 0.69 20.38 16 15 O -0.59 -26.13 16.24 -3.04 -0.05 -26.18 16 16 C -0.12 -3.32 4.18 29.85 0.12 -3.20 16 17 C -0.13 -3.41 4.47 29.85 0.13 -3.27 16 18 C 0.42 10.35 7.13 28.14 0.20 10.55 16 19 O -0.46 -12.64 15.95 -2.82 -0.04 -12.69 16 20 C 0.02 0.35 6.73 41.76 0.28 0.63 16 21 C -0.12 -1.95 9.64 22.66 0.22 -1.73 16 22 C -0.09 -0.79 10.17 22.44 0.23 -0.56 16 23 C -0.13 -1.01 10.12 22.46 0.23 -0.78 16 24 C 0.08 1.08 11.18 84.85 0.95 2.03 16 25 N -0.47 -9.87 9.79 -185.17 -1.81 -11.68 16 26 C 0.12 5.73 6.08 86.86 0.53 6.26 16 27 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 28 H 0.38 20.37 6.93 -74.05 -0.51 19.86 16 29 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 30 H 0.07 3.21 7.85 -2.39 -0.02 3.19 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.11 2.82 8.10 -2.39 -0.02 2.80 16 34 H 0.10 2.83 8.10 -2.39 -0.02 2.81 16 35 H 0.10 2.90 8.10 -2.39 -0.02 2.88 16 36 H 0.11 2.90 8.10 -2.39 -0.02 2.89 16 37 H 0.15 2.21 7.64 -2.91 -0.02 2.18 16 38 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 39 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 40 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.05 2.33 8.04 -2.39 -0.02 2.31 16 42 H 0.07 3.30 8.01 -2.39 -0.02 3.28 16 Total: -1.00 -68.07 359.66 1.19 -66.88 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.53 Total: 34.37 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 4.97 Total: 13.49 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -4.28 Total: -85.65 kcal Atomic # 8 Polarization: -70.38 SS G_CDS: -2.06 Total: -72.44 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -68.07 1.19 -66.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.181 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds