Wall clock time and date at job start Tue Mar 31 2020 12:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38593 * 119.16691 * 2 1 4 4 C 1.39489 * 119.19129 * 180.02562 * 3 2 1 5 5 C 1.47889 * 121.10895 * 179.97438 * 4 3 2 6 6 O 1.21447 * 120.00423 * 173.33538 * 5 4 3 7 7 O 1.34699 * 120.00216 * 353.33647 * 5 4 3 8 8 C 1.45205 * 117.00610 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46688 * 329.99961 * 8 7 5 10 10 C 1.53003 * 109.46849 * 89.99358 * 8 7 5 11 11 C 1.50696 * 109.47116 * 209.99778 * 8 7 5 12 12 H 1.07993 * 120.00497 * 359.97438 * 11 8 7 13 13 C 1.37881 * 119.99709 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99984 * 0.02562 * 13 11 8 15 15 Si 1.86793 * 120.00008 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47291 * 59.99650 * 15 13 11 17 17 H 1.48499 * 109.47373 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47186 * 299.99774 * 15 13 11 19 19 C 1.40894 * 117.78173 * 0.02562 * 4 3 2 20 20 C 1.40524 * 119.27571 * 359.97438 * 19 4 3 21 21 N 1.31559 * 119.16620 * 180.02562 * 2 1 3 22 22 O 1.34843 * 106.85474 * 180.02562 * 20 19 4 23 23 N 1.41320 * 109.42328 * 359.75659 * 22 20 19 24 24 C 1.29816 * 109.72692 * 0.43050 * 23 22 20 25 25 C 1.50701 * 126.33637 * 179.84924 * 24 23 22 26 26 C 1.52993 * 109.47076 * 18.59510 * 25 24 23 27 27 C 1.52996 * 109.46844 * 258.59470 * 25 24 23 28 28 H 1.08997 * 109.47204 * 90.00150 * 1 2 3 29 29 H 1.09008 * 109.47257 * 209.99688 * 1 2 3 30 30 H 1.08993 * 109.47118 * 329.99930 * 1 2 3 31 31 H 1.07992 * 120.40381 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47486 * 300.00445 * 10 8 7 33 33 H 1.09003 * 109.46983 * 60.00784 * 10 8 7 34 34 H 1.09003 * 109.46916 * 180.02562 * 10 8 7 35 35 H 0.97003 * 120.00353 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.46828 * 138.59710 * 25 24 23 37 37 H 1.09006 * 109.47629 * 299.99960 * 26 25 24 38 38 H 1.08999 * 109.47225 * 180.02562 * 26 25 24 39 39 H 1.09003 * 109.47197 * 60.00168 * 26 25 24 40 40 H 1.08998 * 109.47320 * 179.97438 * 27 25 24 41 41 H 1.09003 * 109.47746 * 299.99976 * 27 25 24 42 42 H 1.09001 * 109.47641 * 60.00253 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1824 1.2102 0.0000 4 6 3.5773 1.2108 -0.0005 5 6 4.3409 2.4773 -0.0011 6 8 5.5491 2.4581 0.1205 7 8 3.6963 3.6523 -0.1365 8 6 4.5095 4.8553 -0.1277 9 1 5.3939 4.6914 0.4880 10 6 4.9386 5.1912 -1.5574 11 6 3.7082 5.9992 0.4383 12 1 2.6896 5.8384 0.7589 13 6 4.2756 7.2511 0.5468 14 7 5.5159 7.4471 0.1558 15 14 3.2826 8.6689 1.2490 16 1 2.8662 8.3422 2.6365 17 1 4.1142 9.8992 1.2578 18 1 2.0777 8.8926 0.4103 19 6 4.2346 -0.0355 -0.0016 20 6 3.4709 -1.2151 -0.0016 21 7 2.1482 -1.1488 -0.0005 22 8 4.3418 -2.2446 -0.0021 23 7 5.6628 -1.7427 -0.0082 24 6 5.6385 -0.4448 -0.0023 25 6 6.8355 0.4708 -0.0025 26 6 8.0694 -0.3032 -0.4706 27 6 7.0724 1.0008 1.4130 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6355 2.1414 -0.0004 32 1 5.5181 4.3638 -1.9668 33 1 4.0542 5.3551 -2.1732 34 1 5.5494 6.0940 -1.5508 35 1 5.9150 8.3279 0.2318 36 1 6.6532 1.3068 -0.6777 37 1 8.2517 -1.1393 0.2046 38 1 8.9353 0.3589 -0.4703 39 1 7.9006 -0.6807 -1.4791 40 1 7.9384 1.6626 1.4130 41 1 6.1933 1.5522 1.7466 42 1 7.2546 0.1647 2.0883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709907.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:27 Heat of formation + Delta-G solvation = -21.665334 kcal Electronic energy + Delta-G solvation = -27228.547652 eV Core-core repulsion = 23369.429447 eV Total energy + Delta-G solvation = -3859.118205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.41127 -41.36320 -40.18926 -38.12928 -36.98132 -35.37322 -34.50430 -33.19534 -32.88147 -31.56910 -28.94208 -28.05472 -27.42241 -26.39823 -24.70176 -24.52862 -23.17573 -22.01024 -20.47982 -19.32247 -19.02441 -18.85203 -18.31493 -17.76754 -17.49500 -16.88903 -16.60791 -15.98837 -15.59263 -15.33422 -15.19063 -14.99215 -14.78096 -14.39141 -14.25418 -14.00621 -13.76543 -13.34249 -13.21718 -13.14820 -13.05986 -12.96110 -12.91702 -12.79008 -12.72088 -12.50640 -12.37316 -12.15705 -12.11327 -11.95172 -11.51653 -11.34094 -10.95971 -10.87830 -10.72764 -10.55611 -10.14547 -8.25752 -6.41409 -1.19352 -0.44397 0.55819 0.80380 1.36822 1.44696 1.48539 1.54340 1.64183 2.29578 2.38468 2.44525 2.77858 3.06192 3.14428 3.20364 3.52260 3.65456 3.90908 4.04789 4.10461 4.15572 4.19441 4.51447 4.55386 4.60741 4.69162 4.81801 4.82056 4.83805 4.85653 4.86880 4.88928 4.96017 5.02134 5.14903 5.25921 5.30952 5.36286 5.52642 5.65527 5.77428 5.92520 6.06986 6.33197 6.59546 6.83701 7.29349 8.81114 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.004317 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.560249 B = 6484.848857 C = 8101.468531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.208 3.792 3 C -0.137 4.137 4 C 0.005 3.995 5 C 0.482 3.518 6 O -0.493 6.493 7 O -0.345 6.345 8 C 0.223 3.777 9 H 0.020 0.980 10 C -0.144 4.144 11 C -0.546 4.546 12 H 0.071 0.929 13 C 0.021 3.979 14 N -0.914 5.914 15 Si 0.976 3.024 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.264 1.264 19 C -0.225 4.225 20 C 0.280 3.720 21 N -0.477 5.477 22 O -0.100 6.100 23 N -0.285 5.285 24 C 0.167 3.833 25 C -0.026 4.026 26 C -0.144 4.144 27 C -0.119 4.119 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.188 0.812 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.270 0.730 36 H 0.117 0.883 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -11.882 -0.703 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.064 3.936 3 C -0.157 4.157 4 C -0.006 4.006 5 C 0.327 3.673 6 O -0.384 6.384 7 O -0.261 6.261 8 C 0.170 3.830 9 H 0.037 0.963 10 C -0.202 4.202 11 C -0.584 4.584 12 H 0.089 0.911 13 C -0.179 4.179 14 N -0.552 5.552 15 Si 0.800 3.200 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.189 1.189 19 C -0.231 4.231 20 C 0.098 3.902 21 N -0.199 5.199 22 O -0.102 6.102 23 N -0.033 5.033 24 C -0.014 4.014 25 C -0.045 4.045 26 C -0.201 4.201 27 C -0.177 4.177 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.205 0.795 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.140 -13.708 -0.700 14.657 hybrid contribution 0.248 2.043 0.254 2.074 sum -4.892 -11.665 -0.446 12.657 Atomic orbital electron populations 1.21114 0.82873 1.06260 1.05935 1.22226 0.99332 0.84655 0.87379 1.22741 0.91748 1.02141 0.99025 1.19211 0.94425 0.88674 0.98265 1.21260 0.86558 0.85226 0.74294 1.90787 1.15058 1.87847 1.44683 1.86511 1.43330 1.15169 1.81126 1.20437 0.90183 0.77463 0.94870 0.96252 1.22011 1.00312 1.01447 0.96422 1.21249 1.00481 0.93276 1.43370 0.91090 1.25710 0.96113 1.00960 0.95148 1.69991 1.14100 1.24284 1.46829 0.85323 0.78425 0.77194 0.79048 1.19416 1.20726 1.18875 1.21339 0.93356 0.94818 1.13610 1.20433 0.89699 0.86036 0.94058 1.66492 1.04214 1.31575 1.17628 1.89189 1.12502 1.26974 1.81519 1.80037 0.90038 1.10692 1.22559 1.24937 0.95115 0.92202 0.89100 1.20355 0.88079 0.94777 1.01324 1.21876 0.96468 1.00415 1.01357 1.21656 1.02498 1.00294 0.93250 0.87040 0.88766 0.86798 0.79522 0.95436 0.93709 0.90058 0.92097 0.86583 0.91862 0.89793 0.92422 0.90536 0.93392 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.14 71.24 0.72 -0.48 16 2 C 0.21 4.50 6.78 42.68 0.29 4.79 16 3 C -0.14 -3.37 9.31 22.66 0.21 -3.16 16 4 C 0.00 0.15 5.93 -19.77 -0.12 0.04 16 5 C 0.48 18.28 7.88 70.38 0.55 18.83 16 6 O -0.49 -19.62 8.15 20.01 0.16 -19.45 16 7 O -0.35 -14.57 9.25 -56.08 -0.52 -15.09 16 8 C 0.22 10.98 2.56 29.85 0.08 11.06 16 9 H 0.02 1.07 7.16 -2.39 -0.02 1.06 16 10 C -0.14 -6.74 9.33 71.98 0.67 -6.07 16 11 C -0.55 -28.29 8.90 25.60 0.23 -28.06 16 12 H 0.07 3.56 7.81 -2.91 -0.02 3.53 16 13 C 0.02 1.07 5.30 84.66 0.45 1.52 16 14 N -0.91 -49.17 11.32 21.45 0.24 -48.92 16 15 Si 0.98 40.12 29.54 68.60 2.03 42.14 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 17 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 19 C -0.22 -7.35 6.15 -19.99 -0.12 -7.47 16 20 C 0.28 8.93 8.64 85.16 0.74 9.67 16 21 N -0.48 -13.20 10.25 -296.38 -3.04 -16.24 16 22 O -0.10 -3.36 12.06 29.72 0.36 -3.00 16 23 N -0.28 -9.27 12.19 -43.67 -0.53 -9.80 16 24 C 0.17 5.34 6.31 44.94 0.28 5.63 16 25 C -0.03 -0.78 2.36 -11.54 -0.03 -0.80 16 26 C -0.14 -3.44 8.80 71.98 0.63 -2.81 16 27 C -0.12 -3.50 8.16 71.98 0.59 -2.91 16 28 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.11 0.83 8.07 -2.39 -0.02 0.81 16 31 H 0.19 3.88 7.73 -2.91 -0.02 3.85 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 4.15 6.07 -2.39 -0.01 4.14 16 35 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 36 H 0.12 3.87 5.56 -5.04 -0.03 3.84 16 37 H 0.06 1.46 8.07 -2.38 -0.02 1.44 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.64 6.21 -2.39 -0.01 1.62 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -61.11 350.75 4.91 -56.19 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.04 Total: 14.40 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.17 Total: -0.23 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -3.33 Total: -74.96 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: 0.00 Total: -37.54 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Total: -61.11 4.91 -56.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709907.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.527 kcal (2) G-P(sol) polarization free energy of solvation -61.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds