Wall clock time and date at job start Tue Mar 31 2020 12:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38600 * 119.16849 * 2 1 4 4 C 1.39489 * 119.19404 * 180.02562 * 3 2 1 5 5 C 1.47889 * 121.10895 * 179.97438 * 4 3 2 6 6 O 1.21447 * 120.00423 * 173.33538 * 5 4 3 7 7 O 1.34699 * 120.00216 * 353.33647 * 5 4 3 8 8 C 1.45205 * 117.00610 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46482 * 30.00018 * 8 7 5 10 10 C 1.52994 * 109.46723 * 270.00030 * 8 7 5 11 11 C 1.50696 * 109.47291 * 149.99406 * 8 7 5 12 12 H 1.07998 * 120.00273 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99954 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00087 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00376 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46834 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47250 * 119.99899 * 15 13 11 18 18 H 1.48494 * 109.46962 * 240.00382 * 15 13 11 19 19 C 1.40894 * 117.78173 * 0.02562 * 4 3 2 20 20 C 1.40524 * 119.27571 * 359.97438 * 19 4 3 21 21 N 1.31561 * 119.17158 * 180.02562 * 2 1 3 22 22 O 1.34843 * 106.85474 * 180.02562 * 20 19 4 23 23 N 1.41320 * 109.42328 * 359.75659 * 22 20 19 24 24 C 1.29816 * 109.72692 * 0.43050 * 23 22 20 25 25 C 1.50701 * 126.33637 * 179.84924 * 24 23 22 26 26 C 1.52999 * 109.46852 * 18.59305 * 25 24 23 27 27 C 1.52996 * 109.46844 * 258.59470 * 25 24 23 28 28 H 1.08997 * 109.47138 * 90.00310 * 1 2 3 29 29 H 1.09008 * 109.47189 * 209.99766 * 1 2 3 30 30 H 1.08993 * 109.47252 * 330.00049 * 1 2 3 31 31 H 1.07990 * 120.39932 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.46657 * 179.97438 * 10 8 7 33 33 H 1.08996 * 109.47223 * 299.99185 * 10 8 7 34 34 H 1.08999 * 109.47530 * 59.99959 * 10 8 7 35 35 H 0.96995 * 120.00234 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.46828 * 138.59710 * 25 24 23 37 37 H 1.08997 * 109.47734 * 299.99849 * 26 25 24 38 38 H 1.09003 * 109.46592 * 179.97438 * 26 25 24 39 39 H 1.09003 * 109.47141 * 60.00339 * 26 25 24 40 40 H 1.08998 * 109.47320 * 179.97438 * 27 25 24 41 41 H 1.09003 * 109.47746 * 299.99976 * 27 25 24 42 42 H 1.09001 * 109.47641 * 60.00253 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1824 1.2102 0.0000 4 6 3.5773 1.2109 -0.0005 5 6 4.3408 2.4774 -0.0011 6 8 5.5491 2.4582 0.1205 7 8 3.6963 3.6524 -0.1365 8 6 4.5094 4.8554 -0.1277 9 1 5.4960 4.6299 -0.5328 10 6 4.6516 5.3642 1.3081 11 6 3.8494 5.9141 -0.9730 12 1 2.9123 5.7041 -1.4670 13 6 4.4413 7.1512 -1.1147 14 7 5.5822 7.4071 -0.5127 15 14 3.6229 8.4638 -2.1619 16 1 2.3574 7.9293 -2.7258 17 1 3.3271 9.6530 -1.3231 18 1 4.5332 8.8528 -3.2687 19 6 4.2346 -0.0354 -0.0016 20 6 3.4709 -1.2150 -0.0016 21 7 2.1482 -1.1487 -0.0005 22 8 4.3418 -2.2445 -0.0021 23 7 5.6628 -1.7426 -0.0082 24 6 5.6385 -0.4446 -0.0023 25 6 6.8354 0.4710 -0.0025 26 6 8.0694 -0.3031 -0.4705 27 6 7.0724 1.0009 1.4130 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6354 2.1414 0.0004 32 1 5.2624 6.2670 1.3147 33 1 3.6651 5.5897 1.7131 34 1 5.1291 4.5985 1.9194 35 1 5.9989 8.2773 -0.6127 36 1 6.6532 1.3070 -0.6777 37 1 8.2517 -1.1391 0.2046 38 1 8.9351 0.3593 -0.4711 39 1 7.9006 -0.6806 -1.4791 40 1 7.9384 1.6628 1.4130 41 1 6.1932 1.5523 1.7466 42 1 7.2546 0.1649 2.0883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:34 Heat of formation + Delta-G solvation = -5.931309 kcal Electronic energy + Delta-G solvation = -27228.608095 eV Core-core repulsion = 23370.172168 eV Total energy + Delta-G solvation = -3858.435926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20315 -39.86414 -39.00737 -36.68646 -35.58141 -33.63819 -33.16371 -32.19941 -31.64816 -29.71189 -27.94897 -26.97635 -25.49783 -25.07628 -23.54353 -23.27929 -21.69521 -20.49794 -19.14421 -18.00616 -17.78069 -17.42964 -16.59300 -16.52223 -16.01397 -15.35395 -14.95072 -14.55108 -14.49839 -14.21923 -14.06019 -13.88971 -13.23721 -13.14080 -12.90846 -12.58986 -12.51716 -12.25988 -12.13050 -12.03197 -11.79926 -11.59437 -11.48128 -11.33582 -11.19621 -10.98522 -10.84240 -10.72078 -10.45409 -10.35295 -10.15506 -9.72031 -9.62446 -9.47669 -9.05489 -9.02785 -8.62379 -6.31344 -4.38813 0.00781 0.72132 1.79736 1.99299 2.71736 3.04522 3.15890 3.24296 3.29532 3.50878 3.61054 3.94929 4.20028 4.23603 4.36787 4.73036 4.81186 4.99374 5.02802 5.16950 5.25226 5.29247 5.32914 5.35394 5.61555 5.66561 5.73259 5.75646 5.82303 5.89086 6.01115 6.13195 6.15902 6.31989 6.48525 6.52752 6.72482 6.73331 6.95519 6.99654 7.43341 7.44150 7.55628 7.75193 7.97040 8.33571 8.70159 9.27329 10.75961 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.004314 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.436171 B = 6489.249857 C = 8029.350052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.194 3.806 3 C -0.150 4.150 4 C 0.021 3.979 5 C 0.486 3.514 6 O -0.485 6.485 7 O -0.343 6.343 8 C 0.218 3.782 9 H 0.051 0.949 10 C -0.156 4.156 11 C -0.524 4.524 12 H 0.070 0.930 13 C 0.065 3.935 14 N -0.887 5.887 15 Si 0.911 3.089 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.208 4.208 20 C 0.290 3.710 21 N -0.470 5.470 22 O -0.088 6.088 23 N -0.279 5.279 24 C 0.170 3.830 25 C -0.028 4.028 26 C -0.150 4.150 27 C -0.124 4.124 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.135 0.865 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 -11.717 2.075 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.051 3.949 3 C -0.171 4.171 4 C 0.010 3.990 5 C 0.330 3.670 6 O -0.376 6.376 7 O -0.258 6.258 8 C 0.166 3.834 9 H 0.068 0.932 10 C -0.213 4.213 11 C -0.561 4.561 12 H 0.088 0.912 13 C -0.138 4.138 14 N -0.525 5.525 15 Si 0.738 3.262 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.214 4.214 20 C 0.108 3.892 21 N -0.192 5.192 22 O -0.090 6.090 23 N -0.026 5.026 24 C -0.011 4.011 25 C -0.047 4.047 26 C -0.208 4.208 27 C -0.182 4.182 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.186 0.814 32 H 0.120 0.880 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.152 0.848 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.489 -13.516 2.123 14.120 hybrid contribution -0.200 2.062 -0.479 2.126 sum -3.689 -11.454 1.644 12.146 Atomic orbital electron populations 1.20870 0.86672 1.04564 1.04227 1.21429 0.97342 0.85972 0.90151 1.22402 0.92904 1.00698 1.01060 1.19364 0.93407 0.90340 0.95881 1.20814 0.86290 0.85108 0.74822 1.90771 1.14453 1.87846 1.44543 1.86553 1.43822 1.15179 1.80267 1.20779 0.91353 0.76327 0.94957 0.93160 1.22182 1.00895 1.02289 0.95969 1.21023 1.08751 0.96266 1.30109 0.91160 1.24867 0.94921 0.98159 0.95847 1.69887 1.16808 1.23303 1.42478 0.86219 0.79428 0.80770 0.79752 1.19430 1.20651 1.20693 1.21272 0.93065 0.94634 1.12456 1.20247 0.89114 0.86382 0.93505 1.66313 1.05050 1.30459 1.17355 1.89239 1.12110 1.26398 1.81280 1.80074 0.90155 1.10582 1.21814 1.24741 0.94731 0.92144 0.89477 1.20402 0.87356 0.95246 1.01726 1.21913 0.97192 1.00313 1.01348 1.21717 1.03369 1.00046 0.93042 0.89141 0.89665 0.89243 0.81432 0.88039 0.94314 0.96388 0.92314 0.84781 0.92277 0.91281 0.92585 0.91142 0.91058 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.14 36.00 0.37 -0.45 16 2 C 0.19 2.35 6.78 -82.58 -0.56 1.79 16 3 C -0.15 -1.99 9.31 -38.98 -0.36 -2.35 16 4 C 0.02 0.34 5.93 -104.48 -0.62 -0.28 16 5 C 0.49 9.08 7.88 34.68 0.27 9.35 16 6 O -0.49 -9.33 8.15 -19.22 -0.16 -9.49 16 7 O -0.34 -7.19 9.25 -40.49 -0.37 -7.57 16 8 C 0.22 5.26 2.56 -27.89 -0.07 5.19 16 9 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 10 C -0.16 -3.58 9.33 37.15 0.35 -3.23 16 11 C -0.52 -13.57 8.90 -34.44 -0.31 -13.87 16 12 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -23.63 11.32 55.43 0.63 -23.01 16 15 Si 0.91 19.91 29.54 -169.99 -5.02 14.89 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.21 -3.39 6.15 -104.82 -0.65 -4.03 16 20 C 0.29 4.70 8.64 -16.43 -0.14 4.55 16 21 N -0.47 -6.87 10.25 -9.24 -0.09 -6.96 16 22 O -0.09 -1.48 12.06 7.64 0.09 -1.38 16 23 N -0.28 -4.52 12.19 34.84 0.42 -4.10 16 24 C 0.17 2.69 6.31 -80.23 -0.51 2.19 16 25 C -0.03 -0.41 2.37 -91.77 -0.22 -0.63 16 26 C -0.15 -1.85 8.80 37.16 0.33 -1.52 16 27 C -0.12 -1.76 8.16 37.16 0.30 -1.46 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.09 0.52 8.07 -51.93 -0.42 0.11 16 31 H 0.17 1.96 7.73 -52.49 -0.41 1.55 16 32 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.14 2.19 5.56 -52.10 -0.29 1.90 16 37 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.15 6.21 -51.93 -0.32 0.83 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -28.14 350.74 -6.60 -34.73 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.47 Total: 0.80 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.91 Total: -3.20 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.96 Total: -34.07 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.44 Total: -18.44 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.14 -6.60 -34.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.800 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds