Wall clock time and date at job start Tue Mar 31 2020 12:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38600 * 119.16849 * 2 1 4 4 C 1.39489 * 119.19404 * 180.02562 * 3 2 1 5 5 C 1.47889 * 121.10895 * 179.97438 * 4 3 2 6 6 O 1.21447 * 120.00423 * 173.33538 * 5 4 3 7 7 O 1.34699 * 120.00216 * 353.33647 * 5 4 3 8 8 C 1.45205 * 117.00610 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46482 * 30.00018 * 8 7 5 10 10 C 1.52994 * 109.46723 * 270.00030 * 8 7 5 11 11 C 1.50696 * 109.47291 * 149.99406 * 8 7 5 12 12 H 1.07998 * 120.00273 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99954 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00087 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00376 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46834 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47250 * 119.99899 * 15 13 11 18 18 H 1.48494 * 109.46962 * 240.00382 * 15 13 11 19 19 C 1.40894 * 117.78173 * 0.02562 * 4 3 2 20 20 C 1.40524 * 119.27571 * 359.97438 * 19 4 3 21 21 N 1.31561 * 119.17158 * 180.02562 * 2 1 3 22 22 O 1.34843 * 106.85474 * 180.02562 * 20 19 4 23 23 N 1.41320 * 109.42328 * 359.75659 * 22 20 19 24 24 C 1.29816 * 109.72692 * 0.43050 * 23 22 20 25 25 C 1.50701 * 126.33637 * 179.84924 * 24 23 22 26 26 C 1.52999 * 109.46852 * 18.59305 * 25 24 23 27 27 C 1.52996 * 109.46844 * 258.59470 * 25 24 23 28 28 H 1.08997 * 109.47138 * 90.00310 * 1 2 3 29 29 H 1.09008 * 109.47189 * 209.99766 * 1 2 3 30 30 H 1.08993 * 109.47252 * 330.00049 * 1 2 3 31 31 H 1.07990 * 120.39932 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.46657 * 179.97438 * 10 8 7 33 33 H 1.08996 * 109.47223 * 299.99185 * 10 8 7 34 34 H 1.08999 * 109.47530 * 59.99959 * 10 8 7 35 35 H 0.96995 * 120.00234 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.46828 * 138.59710 * 25 24 23 37 37 H 1.08997 * 109.47734 * 299.99849 * 26 25 24 38 38 H 1.09003 * 109.46592 * 179.97438 * 26 25 24 39 39 H 1.09003 * 109.47141 * 60.00339 * 26 25 24 40 40 H 1.08998 * 109.47320 * 179.97438 * 27 25 24 41 41 H 1.09003 * 109.47746 * 299.99976 * 27 25 24 42 42 H 1.09001 * 109.47641 * 60.00253 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1824 1.2102 0.0000 4 6 3.5773 1.2109 -0.0005 5 6 4.3408 2.4774 -0.0011 6 8 5.5491 2.4582 0.1205 7 8 3.6963 3.6524 -0.1365 8 6 4.5094 4.8554 -0.1277 9 1 5.4960 4.6299 -0.5328 10 6 4.6516 5.3642 1.3081 11 6 3.8494 5.9141 -0.9730 12 1 2.9123 5.7041 -1.4670 13 6 4.4413 7.1512 -1.1147 14 7 5.5822 7.4071 -0.5127 15 14 3.6229 8.4638 -2.1619 16 1 2.3574 7.9293 -2.7258 17 1 3.3271 9.6530 -1.3231 18 1 4.5332 8.8528 -3.2687 19 6 4.2346 -0.0354 -0.0016 20 6 3.4709 -1.2150 -0.0016 21 7 2.1482 -1.1487 -0.0005 22 8 4.3418 -2.2445 -0.0021 23 7 5.6628 -1.7426 -0.0082 24 6 5.6385 -0.4446 -0.0023 25 6 6.8354 0.4710 -0.0025 26 6 8.0694 -0.3031 -0.4705 27 6 7.0724 1.0009 1.4130 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6354 2.1414 0.0004 32 1 5.2624 6.2670 1.3147 33 1 3.6651 5.5897 1.7131 34 1 5.1291 4.5985 1.9194 35 1 5.9989 8.2773 -0.6127 36 1 6.6532 1.3070 -0.6777 37 1 8.2517 -1.1391 0.2046 38 1 8.9351 0.3593 -0.4711 39 1 7.9006 -0.6806 -1.4791 40 1 7.9384 1.6628 1.4130 41 1 6.1932 1.5523 1.7466 42 1 7.2546 0.1649 2.0883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:32 Heat of formation + Delta-G solvation = -21.811813 kcal Electronic energy + Delta-G solvation = -27229.296725 eV Core-core repulsion = 23370.172168 eV Total energy + Delta-G solvation = -3859.124557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.41069 -41.36339 -40.18846 -38.12882 -36.98112 -35.37843 -34.50422 -33.19532 -32.87976 -31.57077 -28.94128 -28.05315 -27.42714 -26.39779 -24.69792 -24.53570 -23.17897 -21.98433 -20.50674 -19.33650 -19.02025 -18.83505 -18.30952 -17.80091 -17.49271 -16.88686 -16.60372 -15.97306 -15.58440 -15.33646 -15.19042 -15.01090 -14.75889 -14.41048 -14.21797 -14.09759 -13.72182 -13.32266 -13.22664 -13.14654 -13.09730 -12.97052 -12.90555 -12.76572 -12.72418 -12.50740 -12.39544 -12.18713 -12.02036 -11.94571 -11.55907 -11.32746 -10.98217 -10.86707 -10.71551 -10.56152 -10.14499 -8.26683 -6.42081 -1.19252 -0.44362 0.55911 0.80464 1.36286 1.44314 1.45292 1.55543 1.65186 2.29725 2.38094 2.44240 2.77906 3.05411 3.14476 3.20326 3.52266 3.65511 3.90950 4.04994 4.10452 4.15674 4.19712 4.51496 4.55651 4.60858 4.69440 4.81873 4.82696 4.83330 4.86235 4.86890 4.89235 4.96153 5.02307 5.15439 5.26047 5.30840 5.36352 5.52735 5.65772 5.77489 5.92819 6.06813 6.33262 6.59408 6.83753 7.28884 8.80625 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.004314 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.436171 B = 6489.249857 C = 8029.350052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.208 3.792 3 C -0.136 4.136 4 C 0.005 3.995 5 C 0.482 3.518 6 O -0.493 6.493 7 O -0.345 6.345 8 C 0.223 3.777 9 H 0.019 0.981 10 C -0.143 4.143 11 C -0.544 4.544 12 H 0.070 0.930 13 C 0.021 3.979 14 N -0.914 5.914 15 Si 0.976 3.024 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.280 1.280 19 C -0.225 4.225 20 C 0.280 3.720 21 N -0.477 5.477 22 O -0.100 6.100 23 N -0.285 5.285 24 C 0.167 3.833 25 C -0.027 4.027 26 C -0.144 4.144 27 C -0.118 4.118 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.188 0.812 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.027 0.973 35 H 0.270 0.730 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -11.738 1.850 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.064 3.936 3 C -0.156 4.156 4 C -0.006 4.006 5 C 0.327 3.673 6 O -0.384 6.384 7 O -0.261 6.261 8 C 0.170 3.830 9 H 0.037 0.963 10 C -0.201 4.201 11 C -0.582 4.582 12 H 0.088 0.912 13 C -0.179 4.179 14 N -0.552 5.552 15 Si 0.800 3.200 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.205 1.205 19 C -0.231 4.231 20 C 0.098 3.902 21 N -0.199 5.199 22 O -0.102 6.102 23 N -0.033 5.033 24 C -0.013 4.013 25 C -0.046 4.046 26 C -0.201 4.201 27 C -0.176 4.176 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.133 0.867 31 H 0.205 0.795 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.405 -13.564 1.904 14.725 hybrid contribution 0.330 2.012 -0.397 2.078 sum -5.076 -11.552 1.507 12.707 Atomic orbital electron populations 1.21113 0.82866 1.06300 1.05904 1.22230 0.99333 0.84657 0.87373 1.22742 0.91728 1.02146 0.99031 1.19212 0.94433 0.88668 0.98256 1.21260 0.86548 0.85204 0.74325 1.90788 1.15039 1.87924 1.44611 1.86512 1.43291 1.15196 1.81141 1.20444 0.90127 0.77333 0.95102 0.96314 1.21999 1.00900 1.01559 0.95654 1.21303 1.08966 0.97133 1.30804 0.91219 1.25702 0.95354 1.00086 0.96794 1.70000 1.17916 1.23909 1.43379 0.85229 0.78635 0.78067 0.78080 1.18607 1.19991 1.20535 1.21340 0.93348 0.94834 1.13620 1.20433 0.89700 0.86033 0.94057 1.66491 1.04205 1.31590 1.17633 1.89189 1.12502 1.26979 1.81519 1.80037 0.90041 1.10694 1.22577 1.24935 0.95120 0.92200 0.89089 1.20362 0.88059 0.94749 1.01460 1.21877 0.96503 1.00433 1.01323 1.21652 1.02557 1.00325 0.93079 0.87145 0.88732 0.86714 0.79493 0.90113 0.93595 0.95368 0.92093 0.86760 0.91770 0.89820 0.92563 0.90516 0.93199 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.14 71.23 0.72 -0.47 16 2 C 0.21 4.49 6.78 42.68 0.29 4.78 16 3 C -0.14 -3.35 9.31 22.66 0.21 -3.14 16 4 C 0.00 0.16 5.93 -19.77 -0.12 0.04 16 5 C 0.48 18.27 7.88 70.38 0.55 18.82 16 6 O -0.49 -19.59 8.15 20.01 0.16 -19.43 16 7 O -0.35 -14.57 9.25 -56.08 -0.52 -15.08 16 8 C 0.22 10.95 2.56 29.84 0.08 11.03 16 9 H 0.02 1.04 7.16 -2.39 -0.02 1.02 16 10 C -0.14 -6.66 9.33 71.98 0.67 -5.99 16 11 C -0.54 -28.29 8.90 25.60 0.23 -28.07 16 12 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 13 C 0.02 1.07 5.30 84.65 0.45 1.51 16 14 N -0.91 -49.15 11.32 21.45 0.24 -48.91 16 15 Si 0.98 40.28 29.54 68.60 2.03 42.30 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 19 C -0.23 -7.36 6.15 -19.99 -0.12 -7.49 16 20 C 0.28 8.95 8.64 85.16 0.74 9.68 16 21 N -0.48 -13.20 10.25 -296.38 -3.04 -16.24 16 22 O -0.10 -3.37 12.06 29.72 0.36 -3.01 16 23 N -0.29 -9.31 12.19 -43.67 -0.53 -9.84 16 24 C 0.17 5.37 6.31 44.94 0.28 5.65 16 25 C -0.03 -0.81 2.37 -11.54 -0.03 -0.83 16 26 C -0.14 -3.49 8.80 71.98 0.63 -2.86 16 27 C -0.12 -3.41 8.16 71.98 0.59 -2.82 16 28 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.11 0.80 8.07 -2.39 -0.02 0.78 16 31 H 0.19 3.84 7.73 -2.92 -0.02 3.82 16 32 H 0.08 4.11 6.07 -2.39 -0.01 4.10 16 33 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 36 H 0.12 3.89 5.56 -5.04 -0.03 3.86 16 37 H 0.06 1.49 8.07 -2.39 -0.02 1.47 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 1.65 6.21 -2.39 -0.01 1.63 16 42 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -61.30 350.74 4.91 -56.38 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.04 Total: 13.98 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.17 Total: -0.16 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -3.33 Total: -74.99 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: 0.00 Total: -37.52 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Total: -61.30 4.91 -56.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.572 kcal (2) G-P(sol) polarization free energy of solvation -61.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds