Wall clock time and date at job start Tue Mar 31 2020 13:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37652 * 119.96238 * 2 1 4 4 C 1.39803 * 119.92158 * 179.97438 * 3 2 1 5 5 C 1.47437 * 120.08237 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99856 * 359.97438 * 5 4 3 7 7 O 1.34744 * 120.00428 * 179.97438 * 5 4 3 8 8 C 1.45206 * 117.00670 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46590 * 29.99992 * 8 7 5 10 10 C 1.52997 * 109.47226 * 270.00216 * 8 7 5 11 11 C 1.50697 * 109.47178 * 149.99698 * 8 7 5 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99687 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00458 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46980 * 89.99582 * 15 13 11 17 17 H 1.48493 * 109.47135 * 209.99651 * 15 13 11 18 18 H 1.48498 * 109.47274 * 330.00048 * 15 13 11 19 19 C 1.39836 * 119.83951 * 0.24884 * 4 3 2 20 20 C 1.37620 * 119.92078 * 359.49609 * 19 4 3 21 21 C 1.39132 * 119.95759 * 179.97438 * 2 1 3 22 22 N 1.39403 * 119.91963 * 0.04211 * 21 2 1 23 23 C 1.47056 * 125.40970 * 269.99772 * 22 21 2 24 24 C 1.54105 * 103.85940 * 180.02562 * 23 22 21 25 25 N 1.47047 * 103.86528 * 0.02562 * 24 23 22 26 26 C 1.33945 * 125.41046 * 89.70083 * 22 21 2 27 27 O 1.21578 * 123.04248 * 359.97438 * 26 22 21 28 28 H 1.09002 * 109.47057 * 89.99694 * 1 2 3 29 29 H 1.08992 * 109.47545 * 210.00303 * 1 2 3 30 30 H 1.08998 * 109.46996 * 330.00235 * 1 2 3 31 31 H 1.08001 * 120.04023 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99431 * 10 8 7 33 33 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 34 34 H 1.09004 * 109.47261 * 59.99603 * 10 8 7 35 35 H 0.96999 * 120.00480 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.04201 * 179.74799 * 19 4 3 37 37 H 1.07994 * 119.96075 * 180.25542 * 20 19 4 38 38 H 1.08999 * 110.55021 * 298.59717 * 23 22 21 39 39 H 1.08998 * 110.54662 * 61.41066 * 23 22 21 40 40 H 1.09003 * 110.54648 * 118.60090 * 24 23 22 41 41 H 1.09004 * 110.54873 * 241.40404 * 24 23 22 42 42 H 0.97001 * 125.40924 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1926 0.0000 4 6 3.5925 1.1916 0.0005 5 6 4.3324 2.4668 0.0000 6 8 3.7271 3.5205 -0.0014 7 8 5.6799 2.4640 0.0010 8 6 6.3419 3.7564 -0.0002 9 1 5.7150 4.4861 0.5122 10 6 6.5755 4.2084 -1.4431 11 6 7.6655 3.6434 0.7114 12 1 7.9781 2.6951 1.1231 13 6 8.4773 4.7507 0.8370 14 7 8.0969 5.9054 0.3353 15 14 10.1183 4.6106 1.7185 16 1 11.1769 4.2535 0.7401 17 1 10.4508 5.9103 2.3551 18 1 10.0319 3.5565 2.7609 19 6 4.2874 -0.0219 -0.0042 20 6 3.5935 -1.2103 0.0011 21 6 2.2018 -1.2054 0.0005 22 7 1.5022 -2.4112 0.0002 23 6 1.0738 -3.1481 1.1985 24 6 0.3554 -4.3883 0.6321 25 7 0.4558 -4.2187 -0.8251 26 6 1.1084 -3.0797 -1.0917 27 8 1.3277 -2.6904 -2.2224 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6545 2.1279 -0.0004 32 1 7.2024 3.4786 -1.9555 33 1 7.0721 5.1787 -1.4439 34 1 5.6181 4.2901 -1.9578 35 1 8.6679 6.6845 0.4239 36 1 5.3674 -0.0265 -0.0079 37 1 4.1296 -2.1479 0.0017 38 1 1.9371 -3.4452 1.7940 39 1 0.3868 -2.5457 1.7929 40 1 0.8620 -5.3008 0.9466 41 1 -0.6886 -4.4018 0.9451 42 1 0.1015 -4.8319 -1.4880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:15 Heat of formation + Delta-G solvation = -70.431638 kcal Electronic energy + Delta-G solvation = -26099.270736 eV Core-core repulsion = 22238.037865 eV Total energy + Delta-G solvation = -3861.232871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64986 -39.85829 -38.59272 -36.62861 -35.70315 -34.46437 -33.28709 -32.77459 -30.52581 -29.51886 -29.03376 -27.04287 -25.32652 -24.70116 -23.36605 -21.99464 -21.87084 -20.69487 -19.44579 -18.19087 -17.34093 -17.15476 -16.89333 -16.50173 -15.75349 -15.33044 -15.20153 -14.94563 -14.58011 -14.48775 -14.19175 -14.09782 -13.68100 -13.27640 -13.23904 -12.90525 -12.80687 -12.61232 -12.31763 -12.05207 -11.96157 -11.70741 -11.26870 -11.20421 -11.05993 -10.81829 -10.53288 -10.37939 -10.27485 -9.74838 -9.68138 -9.53587 -9.09788 -8.94613 -8.90164 -8.72856 -8.48378 -6.17718 -4.24714 0.69674 1.31965 2.17938 2.82907 2.92495 3.25362 3.30364 3.33910 3.50621 3.61030 3.88308 3.92601 4.33705 4.39653 4.68264 4.75556 4.78299 4.92739 5.13255 5.15676 5.18403 5.26497 5.31711 5.35277 5.47235 5.49189 5.65599 5.78377 6.02998 6.16918 6.36188 6.43292 6.48691 6.66072 6.68914 6.91403 6.92612 6.94956 7.09652 7.15626 7.59651 7.73430 7.92883 8.14053 8.29531 8.61180 8.87406 9.40528 10.89788 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025783 B = 0.002640 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.713973 B =10604.495018 C =11037.973097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.090 4.090 3 C -0.054 4.054 4 C -0.099 4.099 5 C 0.495 3.505 6 O -0.515 6.515 7 O -0.350 6.350 8 C 0.216 3.784 9 H 0.048 0.952 10 C -0.156 4.156 11 C -0.521 4.521 12 H 0.069 0.931 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.912 3.088 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.059 4.059 20 C -0.117 4.117 21 C 0.182 3.818 22 N -0.589 5.589 23 C 0.092 3.908 24 C 0.094 3.906 25 N -0.742 5.742 26 C 0.703 3.297 27 O -0.572 6.572 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.717 -21.087 3.343 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.091 4.091 3 C -0.073 4.073 4 C -0.100 4.100 5 C 0.340 3.660 6 O -0.406 6.406 7 O -0.266 6.266 8 C 0.164 3.836 9 H 0.066 0.934 10 C -0.213 4.213 11 C -0.559 4.559 12 H 0.087 0.913 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.739 3.261 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.078 4.078 20 C -0.137 4.137 21 C 0.092 3.908 22 N -0.325 5.325 23 C -0.031 4.031 24 C -0.032 4.032 25 N -0.405 5.405 26 C 0.403 3.597 27 O -0.447 6.447 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -16.586 -20.232 2.757 26.306 hybrid contribution 0.697 -0.220 0.240 0.769 sum -15.890 -20.452 2.997 26.072 Atomic orbital electron populations 1.20694 0.90449 1.02548 1.02706 1.19961 0.96646 0.91694 1.00846 1.21053 0.92396 0.98031 0.95825 1.19528 0.93294 0.92174 1.05040 1.20908 0.83163 0.88448 0.73529 1.90777 1.70113 1.33378 1.46380 1.86542 1.17599 1.40834 1.81600 1.20679 0.91518 0.76626 0.94819 0.93449 1.22172 0.98666 1.03980 0.96515 1.21015 1.01567 0.96833 1.36443 0.91257 1.24890 0.98732 0.94771 0.95607 1.69898 1.37782 1.00229 1.44757 0.86265 0.82606 0.77579 0.79624 1.20356 1.20986 1.19619 1.21449 1.01370 0.90332 0.94610 1.21249 0.92663 0.98805 1.00975 1.16971 0.89581 0.82495 1.01775 1.44037 1.59509 1.22351 1.06559 1.22527 1.00001 0.91917 0.88618 1.22368 1.01625 0.98327 0.80834 1.45048 1.62363 1.24887 1.08162 1.15840 0.78705 0.80756 0.84362 1.91014 1.61837 1.71105 1.20760 0.90933 0.91890 0.90987 0.83968 0.94354 0.88190 0.96434 0.92380 0.83400 0.85119 0.89421 0.89568 0.89690 0.89766 0.72716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.76 36.01 0.35 -0.74 16 2 C -0.09 -1.17 5.89 -104.50 -0.62 -1.78 16 3 C -0.05 -0.82 9.23 -39.21 -0.36 -1.18 16 4 C -0.10 -1.72 5.87 -104.97 -0.62 -2.34 16 5 C 0.50 10.87 7.86 34.48 0.27 11.14 16 6 O -0.52 -12.52 15.60 -19.28 -0.30 -12.82 16 7 O -0.35 -8.45 9.10 -40.61 -0.37 -8.82 16 8 C 0.22 5.87 2.56 -27.89 -0.07 5.80 16 9 H 0.05 1.42 7.16 -51.93 -0.37 1.04 16 10 C -0.16 -4.03 9.33 37.16 0.35 -3.68 16 11 C -0.52 -14.65 8.90 -34.44 -0.31 -14.96 16 12 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 14 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 15 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.06 -0.89 9.60 -39.21 -0.38 -1.26 16 20 C -0.12 -1.53 9.95 -39.46 -0.39 -1.92 16 21 C 0.18 2.32 5.40 -83.74 -0.45 1.87 16 22 N -0.59 -6.11 1.96 -118.24 -0.23 -6.34 16 23 C 0.09 0.50 7.34 -3.16 -0.02 0.48 16 24 C 0.09 0.33 8.06 -3.17 -0.03 0.30 16 25 N -0.74 -5.26 6.37 -64.70 -0.41 -5.67 16 26 C 0.70 8.41 8.56 -88.40 -0.76 7.66 16 27 O -0.57 -9.76 17.65 5.30 0.09 -9.66 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.54 6.65 -51.93 -0.35 0.20 16 30 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.14 2.09 7.64 -52.49 -0.40 1.69 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.15 2.19 7.60 -52.48 -0.40 1.79 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.36 7.59 -51.93 -0.39 -0.03 16 40 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 41 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.43 2.30 8.96 -40.82 -0.37 1.94 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -35.64 359.29 -8.84 -44.49 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.52 Total: 1.10 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.12 Total: 1.01 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.02 Total: -36.78 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.58 Total: -31.30 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.64 -8.84 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.946 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds