Wall clock time and date at job start Tue Mar 31 2020 13:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37652 * 119.96238 * 2 1 4 4 C 1.39803 * 119.92158 * 179.97438 * 3 2 1 5 5 C 1.47437 * 120.08237 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99856 * 359.97438 * 5 4 3 7 7 O 1.34744 * 120.00428 * 179.97438 * 5 4 3 8 8 C 1.45206 * 117.00670 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46590 * 29.99992 * 8 7 5 10 10 C 1.52997 * 109.47226 * 270.00216 * 8 7 5 11 11 C 1.50697 * 109.47178 * 149.99698 * 8 7 5 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99687 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00458 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46980 * 89.99582 * 15 13 11 17 17 H 1.48493 * 109.47135 * 209.99651 * 15 13 11 18 18 H 1.48498 * 109.47274 * 330.00048 * 15 13 11 19 19 C 1.39836 * 119.83951 * 0.24884 * 4 3 2 20 20 C 1.37620 * 119.92078 * 359.49609 * 19 4 3 21 21 C 1.39132 * 119.95759 * 179.97438 * 2 1 3 22 22 N 1.39403 * 119.91963 * 0.04211 * 21 2 1 23 23 C 1.47056 * 125.40970 * 269.99772 * 22 21 2 24 24 C 1.54105 * 103.85940 * 180.02562 * 23 22 21 25 25 N 1.47047 * 103.86528 * 0.02562 * 24 23 22 26 26 C 1.33945 * 125.41046 * 89.70083 * 22 21 2 27 27 O 1.21578 * 123.04248 * 359.97438 * 26 22 21 28 28 H 1.09002 * 109.47057 * 89.99694 * 1 2 3 29 29 H 1.08992 * 109.47545 * 210.00303 * 1 2 3 30 30 H 1.08998 * 109.46996 * 330.00235 * 1 2 3 31 31 H 1.08001 * 120.04023 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99431 * 10 8 7 33 33 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 34 34 H 1.09004 * 109.47261 * 59.99603 * 10 8 7 35 35 H 0.96999 * 120.00480 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.04201 * 179.74799 * 19 4 3 37 37 H 1.07994 * 119.96075 * 180.25542 * 20 19 4 38 38 H 1.08999 * 110.55021 * 298.59717 * 23 22 21 39 39 H 1.08998 * 110.54662 * 61.41066 * 23 22 21 40 40 H 1.09003 * 110.54648 * 118.60090 * 24 23 22 41 41 H 1.09004 * 110.54873 * 241.40404 * 24 23 22 42 42 H 0.97001 * 125.40924 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1926 0.0000 4 6 3.5925 1.1916 0.0005 5 6 4.3324 2.4668 0.0000 6 8 3.7271 3.5205 -0.0014 7 8 5.6799 2.4640 0.0010 8 6 6.3419 3.7564 -0.0002 9 1 5.7150 4.4861 0.5122 10 6 6.5755 4.2084 -1.4431 11 6 7.6655 3.6434 0.7114 12 1 7.9781 2.6951 1.1231 13 6 8.4773 4.7507 0.8370 14 7 8.0969 5.9054 0.3353 15 14 10.1183 4.6106 1.7185 16 1 11.1769 4.2535 0.7401 17 1 10.4508 5.9103 2.3551 18 1 10.0319 3.5565 2.7609 19 6 4.2874 -0.0219 -0.0042 20 6 3.5935 -1.2103 0.0011 21 6 2.2018 -1.2054 0.0005 22 7 1.5022 -2.4112 0.0002 23 6 1.0738 -3.1481 1.1985 24 6 0.3554 -4.3883 0.6321 25 7 0.4558 -4.2187 -0.8251 26 6 1.1084 -3.0797 -1.0917 27 8 1.3277 -2.6904 -2.2224 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6545 2.1279 -0.0004 32 1 7.2024 3.4786 -1.9555 33 1 7.0721 5.1787 -1.4439 34 1 5.6181 4.2901 -1.9578 35 1 8.6679 6.6845 0.4239 36 1 5.3674 -0.0265 -0.0079 37 1 4.1296 -2.1479 0.0017 38 1 1.9371 -3.4452 1.7940 39 1 0.3868 -2.5457 1.7929 40 1 0.8620 -5.3008 0.9466 41 1 -0.6886 -4.4018 0.9451 42 1 0.1015 -4.8319 -1.4880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:14 Heat of formation + Delta-G solvation = -93.062142 kcal Electronic energy + Delta-G solvation = -26100.252068 eV Core-core repulsion = 22238.037865 eV Total energy + Delta-G solvation = -3862.214203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.44686 -41.44225 -39.90755 -37.63554 -37.47991 -35.48810 -35.22180 -33.83258 -31.92929 -31.17252 -29.71857 -28.03655 -27.47434 -25.99003 -23.85388 -23.48416 -23.07831 -22.06774 -20.96157 -19.04491 -18.96870 -18.55080 -17.89172 -17.65571 -17.47618 -16.84458 -16.54434 -16.13602 -16.03729 -15.40115 -15.24622 -14.94825 -14.82543 -14.60827 -14.34664 -14.26912 -14.06894 -13.68040 -13.38536 -13.27445 -13.18949 -13.04546 -12.94735 -12.81333 -12.76826 -12.42761 -12.30400 -12.16191 -11.63002 -11.57952 -11.50210 -11.02154 -10.61103 -10.48884 -10.09858 -9.84546 -9.69375 -8.29223 -6.46462 -0.55153 0.20498 1.38664 1.42296 1.44878 1.48611 1.55844 1.90191 1.97256 2.40603 2.55605 2.98781 3.01537 3.55063 3.64645 3.70730 3.77223 4.06467 4.12828 4.25451 4.31788 4.37876 4.47593 4.59417 4.66816 4.68531 4.75466 4.76915 4.80529 4.89313 4.96150 4.99649 5.12134 5.12490 5.25183 5.29639 5.43961 5.46696 5.59070 5.86532 5.88901 6.02640 6.18283 6.40117 6.57605 6.87186 7.24746 7.48859 8.78882 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025783 B = 0.002640 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.713973 B =10604.495018 C =11037.973097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.090 4.090 3 C -0.055 4.055 4 C -0.127 4.127 5 C 0.492 3.508 6 O -0.549 6.549 7 O -0.354 6.354 8 C 0.218 3.782 9 H 0.009 0.991 10 C -0.143 4.143 11 C -0.548 4.548 12 H 0.070 0.930 13 C 0.015 3.985 14 N -0.918 5.918 15 Si 0.986 3.014 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.059 4.059 20 C -0.113 4.113 21 C 0.192 3.808 22 N -0.593 5.593 23 C 0.082 3.918 24 C 0.097 3.903 25 N -0.728 5.728 26 C 0.694 3.306 27 O -0.634 6.634 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.021 0.979 35 H 0.271 0.729 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 -24.221 4.882 30.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.092 4.092 3 C -0.074 4.074 4 C -0.128 4.128 5 C 0.339 3.661 6 O -0.442 6.442 7 O -0.270 6.270 8 C 0.165 3.835 9 H 0.027 0.973 10 C -0.201 4.201 11 C -0.585 4.585 12 H 0.088 0.912 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.809 3.191 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.077 4.077 20 C -0.133 4.133 21 C 0.101 3.899 22 N -0.327 5.327 23 C -0.038 4.038 24 C -0.027 4.027 25 N -0.390 5.390 26 C 0.395 3.605 27 O -0.514 6.514 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.157 0.843 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -17.325 -23.433 4.340 29.463 hybrid contribution 0.757 0.632 -0.215 1.009 sum -16.568 -22.801 4.125 28.485 Atomic orbital electron populations 1.20740 0.88186 1.04333 1.02755 1.20238 0.98227 0.90942 0.99767 1.21093 0.91467 0.99017 0.95849 1.19333 0.93912 0.90489 1.09066 1.21740 0.82262 0.89976 0.72119 1.90743 1.70249 1.35054 1.48152 1.86527 1.19181 1.39060 1.82203 1.20413 0.91052 0.77144 0.94934 0.97313 1.22008 0.98787 1.03225 0.96108 1.21283 1.02231 0.97390 1.37591 0.91152 1.25872 1.02552 0.94066 0.95968 1.70020 1.39270 1.00984 1.45291 0.85137 0.77516 0.77910 0.78572 1.19221 1.20286 1.18747 1.21443 1.01382 0.90311 0.94596 1.21444 0.93044 0.98757 1.00009 1.17132 0.89787 0.83647 0.99310 1.44092 1.58982 1.21583 1.08079 1.22961 1.01303 0.92382 0.87158 1.22700 1.03562 0.98369 0.78039 1.45050 1.60554 1.23108 1.10305 1.16139 0.78952 0.81788 0.83644 1.90970 1.64344 1.72871 1.23259 0.91594 0.89763 0.89611 0.84261 0.93471 0.89809 0.96016 0.91939 0.83600 0.82769 0.87865 0.87823 0.87037 0.86889 0.71768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 9.76 71.24 0.70 -1.21 16 2 C -0.09 -2.25 5.89 -19.79 -0.12 -2.37 16 3 C -0.06 -1.70 9.23 22.51 0.21 -1.49 16 4 C -0.13 -4.55 5.87 -20.09 -0.12 -4.67 16 5 C 0.49 22.77 7.86 70.25 0.55 23.33 16 6 O -0.55 -28.32 15.60 19.79 0.31 -28.01 16 7 O -0.35 -17.89 9.10 -56.55 -0.51 -18.41 16 8 C 0.22 12.39 2.56 29.85 0.08 12.47 16 9 H 0.01 0.57 7.16 -2.39 -0.02 0.56 16 10 C -0.14 -7.72 9.33 71.98 0.67 -7.05 16 11 C -0.55 -31.57 8.90 25.60 0.23 -31.34 16 12 H 0.07 3.93 7.81 -2.91 -0.02 3.91 16 13 C 0.02 0.84 5.30 84.66 0.45 1.29 16 14 N -0.92 -53.48 11.32 21.45 0.24 -53.24 16 15 Si 0.99 43.14 29.54 68.60 2.03 45.16 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 19 C -0.06 -1.78 9.60 22.51 0.22 -1.56 16 20 C -0.11 -2.80 9.95 22.35 0.22 -2.57 16 21 C 0.19 4.58 5.40 38.38 0.21 4.79 16 22 N -0.59 -10.68 1.96 -646.72 -1.27 -11.95 16 23 C 0.08 0.55 7.34 86.65 0.64 1.19 16 24 C 0.10 0.22 8.06 86.65 0.70 0.91 16 25 N -0.73 -8.03 6.37 -477.35 -3.04 -11.07 16 26 C 0.69 15.23 8.56 179.57 1.54 16.77 16 27 O -0.63 -21.40 17.65 -3.96 -0.07 -21.47 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.18 6.65 -2.39 -0.02 1.16 16 30 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 31 H 0.14 4.26 7.64 -2.91 -0.02 4.24 16 32 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 4.77 6.07 -2.39 -0.01 4.76 16 34 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.15 4.41 7.60 -2.91 -0.02 4.38 16 37 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.10 0.38 7.59 -2.39 -0.02 0.36 16 40 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.44 3.49 8.96 -92.71 -0.83 2.66 16 Total: -1.00 -81.60 359.29 4.07 -77.53 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.23 Total: 12.98 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.16 Total: 8.48 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -4.07 Total: -76.25 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -0.28 Total: -67.89 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -81.60 4.07 -77.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.531 kcal (2) G-P(sol) polarization free energy of solvation -81.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds