Wall clock time and date at job start Tue Mar 31 2020 13:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37660 * 119.96027 * 2 1 4 4 C 1.39799 * 119.91717 * 180.02562 * 3 2 1 5 5 C 1.47441 * 120.07738 * 180.02562 * 4 3 2 6 6 O 1.21510 * 120.00103 * 0.02562 * 5 4 3 7 7 O 1.34756 * 119.99976 * 180.02562 * 5 4 3 8 8 C 1.45196 * 116.99877 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47215 * 329.99288 * 8 7 5 10 10 C 1.53000 * 109.47607 * 89.99876 * 8 7 5 11 11 C 1.50707 * 109.46874 * 209.99843 * 8 7 5 12 12 H 1.08002 * 120.00006 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99879 * 179.97438 * 11 8 7 14 14 N 1.31520 * 120.00022 * 179.97438 * 13 11 8 15 15 Si 1.86803 * 119.99995 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47323 * 90.00018 * 15 13 11 17 17 H 1.48506 * 109.46797 * 209.99694 * 15 13 11 18 18 H 1.48497 * 109.47304 * 329.99470 * 15 13 11 19 19 C 1.39843 * 119.84154 * 0.02562 * 4 3 2 20 20 C 1.37614 * 119.91881 * 359.70638 * 19 4 3 21 21 C 1.39135 * 119.95990 * 179.97438 * 2 1 3 22 22 N 1.39405 * 119.91853 * 359.97438 * 21 2 1 23 23 C 1.47056 * 125.40638 * 270.00162 * 22 21 2 24 24 C 1.54111 * 103.86155 * 179.97438 * 23 22 21 25 25 N 1.47058 * 103.86056 * 0.02562 * 24 23 22 26 26 C 1.33946 * 125.41108 * 90.00204 * 22 21 2 27 27 O 1.21581 * 123.04425 * 359.97438 * 26 22 21 28 28 H 1.08998 * 109.47021 * 270.02226 * 1 2 3 29 29 H 1.09005 * 109.47129 * 30.01976 * 1 2 3 30 30 H 1.08996 * 109.47526 * 150.01812 * 1 2 3 31 31 H 1.07996 * 120.03962 * 0.02689 * 3 2 1 32 32 H 1.09002 * 109.46810 * 299.99743 * 10 8 7 33 33 H 1.09000 * 109.47313 * 59.99472 * 10 8 7 34 34 H 1.09000 * 109.47514 * 179.97438 * 10 8 7 35 35 H 0.96996 * 119.99947 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.03581 * 179.97438 * 19 4 3 37 37 H 1.07996 * 119.95775 * 180.29473 * 20 19 4 38 38 H 1.08999 * 110.54870 * 298.59043 * 23 22 21 39 39 H 1.08995 * 110.55169 * 61.40869 * 23 22 21 40 40 H 1.08997 * 110.54547 * 118.59224 * 24 23 22 41 41 H 1.08997 * 110.54790 * 241.40552 * 24 23 22 42 42 H 0.96998 * 125.40856 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1926 0.0000 4 6 3.5925 1.1916 -0.0005 5 6 4.3324 2.4669 0.0000 6 8 3.7270 3.5205 0.0014 7 8 5.6799 2.4641 -0.0010 8 6 6.3418 3.7564 0.0002 9 1 5.7149 4.4862 -0.5123 10 6 6.5754 4.2085 1.4431 11 6 7.6655 3.6435 -0.7114 12 1 7.9781 2.6952 -1.1230 13 6 8.4773 4.7508 -0.8370 14 7 9.6327 4.6522 -1.4575 15 14 7.9368 6.3908 -0.1245 16 1 8.4180 6.5050 1.2757 17 1 8.5083 7.4955 -0.9359 18 1 6.4544 6.4759 -0.1469 19 6 4.2874 -0.0219 -0.0016 20 6 3.5935 -1.2103 0.0040 21 6 2.2018 -1.2054 0.0005 22 7 1.5022 -2.4112 0.0016 23 6 1.0751 -3.1474 1.2009 24 6 0.3550 -4.3873 0.6360 25 7 0.4534 -4.2184 -0.8215 26 6 1.1124 -3.0833 -1.0895 27 8 1.3356 -2.6977 -2.2207 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6545 2.1279 0.0004 32 1 5.6180 4.2902 1.9577 33 1 7.2022 3.4788 1.9556 34 1 7.0727 5.1785 1.4440 35 1 10.2036 5.4313 -1.5462 36 1 5.3674 -0.0264 -0.0025 37 1 4.1295 -2.1478 0.0079 38 1 1.9390 -3.4441 1.7956 39 1 0.3887 -2.5447 1.7955 40 1 0.8614 -5.2999 0.9501 41 1 -0.6886 -4.4000 0.9505 42 1 0.0972 -4.8312 -1.4836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:19 Heat of formation + Delta-G solvation = -60.535338 kcal Electronic energy + Delta-G solvation = -26165.748209 eV Core-core repulsion = 22304.944474 eV Total energy + Delta-G solvation = -3860.803735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68428 -40.01509 -38.73130 -36.65172 -35.93788 -34.51777 -33.25674 -32.81336 -30.83897 -30.25464 -29.10221 -27.12226 -25.32958 -24.78279 -23.39222 -22.07943 -21.97244 -20.76714 -19.58606 -18.21817 -17.56495 -17.17881 -16.97102 -16.49532 -16.14529 -15.41849 -15.39359 -15.11325 -14.68877 -14.51736 -14.21552 -14.11450 -13.72929 -13.33482 -13.25304 -12.96721 -12.92850 -12.77379 -12.56335 -12.34652 -12.16908 -12.05109 -11.75054 -11.51277 -11.29509 -10.89589 -10.55769 -10.23877 -10.06612 -9.78970 -9.70561 -9.62381 -9.13517 -9.11748 -9.01408 -8.79772 -8.68077 -6.22172 -4.24690 0.61482 1.25975 2.14919 2.79650 2.80248 3.18934 3.31590 3.33428 3.39689 3.48624 3.77486 3.90030 4.27053 4.37888 4.63756 4.71016 4.75607 4.90363 5.05121 5.09060 5.14686 5.19917 5.21780 5.30638 5.40085 5.44281 5.54540 5.72681 5.95282 6.04547 6.16870 6.25773 6.31188 6.33608 6.41602 6.45058 6.59813 6.66594 6.89265 7.00889 7.06787 7.33130 7.49402 8.20469 8.27014 8.56130 8.84632 9.34608 10.89916 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.002692 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.229631 B =10398.802555 C =10754.540108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.091 4.091 3 C -0.053 4.053 4 C -0.102 4.102 5 C 0.497 3.503 6 O -0.516 6.516 7 O -0.335 6.335 8 C 0.191 3.809 9 H 0.047 0.953 10 C -0.170 4.170 11 C -0.525 4.525 12 H 0.088 0.912 13 C 0.080 3.920 14 N -0.888 5.888 15 Si 0.879 3.121 16 H -0.273 1.273 17 H -0.290 1.290 18 H -0.262 1.262 19 C -0.057 4.057 20 C -0.117 4.117 21 C 0.185 3.815 22 N -0.590 5.590 23 C 0.093 3.907 24 C 0.094 3.906 25 N -0.742 5.742 26 C 0.702 3.298 27 O -0.570 6.570 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.143 0.857 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.269 0.731 36 H 0.150 0.850 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.786 -18.875 9.059 29.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.092 4.092 3 C -0.071 4.071 4 C -0.103 4.103 5 C 0.342 3.658 6 O -0.408 6.408 7 O -0.250 6.250 8 C 0.138 3.862 9 H 0.065 0.935 10 C -0.227 4.227 11 C -0.563 4.563 12 H 0.106 0.894 13 C -0.124 4.124 14 N -0.525 5.525 15 Si 0.708 3.292 16 H -0.200 1.200 17 H -0.217 1.217 18 H -0.187 1.187 19 C -0.075 4.075 20 C -0.137 4.137 21 C 0.095 3.905 22 N -0.326 5.326 23 C -0.029 4.029 24 C -0.032 4.032 25 N -0.404 5.404 26 C 0.403 3.597 27 O -0.446 6.446 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.168 0.832 37 H 0.150 0.850 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -20.546 -18.128 8.419 28.664 hybrid contribution -0.237 0.669 0.252 0.753 sum -20.783 -17.459 8.671 28.494 Atomic orbital electron populations 1.20679 0.90393 1.03123 1.02152 1.19960 0.96687 0.91665 1.00903 1.21041 0.92294 0.98064 0.95742 1.19438 0.93257 0.91904 1.05725 1.20994 0.82926 0.88679 0.73235 1.90774 1.70063 1.33390 1.46538 1.86569 1.17757 1.38902 1.81769 1.20965 0.93043 0.78456 0.93786 0.93509 1.22527 1.00094 1.01274 0.98818 1.20775 0.99839 0.99101 1.36542 0.89413 1.24729 0.94500 0.98426 0.94699 1.69837 1.10266 1.30753 1.41622 0.86971 0.79866 0.83620 0.78742 1.19982 1.21670 1.18662 1.21474 1.01470 0.90300 0.94282 1.21268 0.92671 0.98879 1.00863 1.16988 0.89589 0.82549 1.01367 1.44049 1.59660 1.22235 1.06618 1.22515 0.99960 0.91936 0.88534 1.22372 1.01642 0.98321 0.80826 1.45055 1.62007 1.25207 1.08177 1.15847 0.78763 0.80761 0.84364 1.91028 1.61734 1.71141 1.20676 0.91071 0.90964 0.91776 0.83965 0.94363 0.91716 0.92487 0.92048 0.83243 0.84988 0.89451 0.89588 0.89687 0.89734 0.72679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.76 36.01 0.35 -0.68 16 2 C -0.09 -1.13 5.89 -104.50 -0.62 -1.74 16 3 C -0.05 -0.75 9.23 -39.21 -0.36 -1.12 16 4 C -0.10 -1.69 5.88 -104.97 -0.62 -2.30 16 5 C 0.50 10.29 7.86 34.48 0.27 10.57 16 6 O -0.52 -11.71 15.60 -19.27 -0.30 -12.01 16 7 O -0.33 -7.70 9.11 -40.65 -0.37 -8.07 16 8 C 0.19 4.86 2.16 -27.88 -0.06 4.80 16 9 H 0.05 1.26 6.22 -51.93 -0.32 0.94 16 10 C -0.17 -3.88 9.03 37.16 0.34 -3.54 16 11 C -0.52 -15.11 9.48 -34.44 -0.33 -15.44 16 12 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 13 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 14 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 15 Si 0.88 21.75 24.37 -169.99 -4.14 17.61 16 16 H -0.27 -6.45 6.87 56.52 0.39 -6.07 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 19 C -0.06 -0.82 9.60 -39.21 -0.38 -1.20 16 20 C -0.12 -1.48 9.95 -39.46 -0.39 -1.87 16 21 C 0.19 2.28 5.40 -83.74 -0.45 1.83 16 22 N -0.59 -5.93 2.04 -118.23 -0.24 -6.17 16 23 C 0.09 0.47 7.61 -3.16 -0.02 0.45 16 24 C 0.09 0.31 8.06 -3.16 -0.03 0.28 16 25 N -0.74 -5.14 6.37 -64.70 -0.41 -5.55 16 26 C 0.70 8.28 7.97 -88.39 -0.70 7.57 16 27 O -0.57 -9.71 17.65 5.29 0.09 -9.62 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.06 0.66 6.96 -51.93 -0.36 0.29 16 31 H 0.14 1.96 7.64 -52.49 -0.40 1.56 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.15 2.15 7.60 -52.49 -0.40 1.75 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.43 2.25 8.96 -40.82 -0.37 1.89 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -36.70 353.09 -7.80 -44.50 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.43 Total: 0.22 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -3.10 Total: -0.18 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.12 Total: -37.78 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.58 Total: -29.69 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.70 -7.80 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.037 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds