Wall clock time and date at job start Tue Mar 31 2020 13:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37660 * 119.96027 * 2 1 4 4 C 1.39799 * 119.91717 * 180.02562 * 3 2 1 5 5 C 1.47441 * 120.07738 * 180.02562 * 4 3 2 6 6 O 1.21510 * 120.00103 * 0.02562 * 5 4 3 7 7 O 1.34756 * 119.99976 * 180.02562 * 5 4 3 8 8 C 1.45196 * 116.99877 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47215 * 329.99288 * 8 7 5 10 10 C 1.53000 * 109.47607 * 89.99876 * 8 7 5 11 11 C 1.50707 * 109.46874 * 209.99843 * 8 7 5 12 12 H 1.08002 * 120.00006 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99879 * 179.97438 * 11 8 7 14 14 N 1.31520 * 120.00022 * 179.97438 * 13 11 8 15 15 Si 1.86803 * 119.99995 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47323 * 90.00018 * 15 13 11 17 17 H 1.48506 * 109.46797 * 209.99694 * 15 13 11 18 18 H 1.48497 * 109.47304 * 329.99470 * 15 13 11 19 19 C 1.39843 * 119.84154 * 0.02562 * 4 3 2 20 20 C 1.37614 * 119.91881 * 359.70638 * 19 4 3 21 21 C 1.39135 * 119.95990 * 179.97438 * 2 1 3 22 22 N 1.39405 * 119.91853 * 359.97438 * 21 2 1 23 23 C 1.47056 * 125.40638 * 270.00162 * 22 21 2 24 24 C 1.54111 * 103.86155 * 179.97438 * 23 22 21 25 25 N 1.47058 * 103.86056 * 0.02562 * 24 23 22 26 26 C 1.33946 * 125.41108 * 90.00204 * 22 21 2 27 27 O 1.21581 * 123.04425 * 359.97438 * 26 22 21 28 28 H 1.08998 * 109.47021 * 270.02226 * 1 2 3 29 29 H 1.09005 * 109.47129 * 30.01976 * 1 2 3 30 30 H 1.08996 * 109.47526 * 150.01812 * 1 2 3 31 31 H 1.07996 * 120.03962 * 0.02689 * 3 2 1 32 32 H 1.09002 * 109.46810 * 299.99743 * 10 8 7 33 33 H 1.09000 * 109.47313 * 59.99472 * 10 8 7 34 34 H 1.09000 * 109.47514 * 179.97438 * 10 8 7 35 35 H 0.96996 * 119.99947 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.03581 * 179.97438 * 19 4 3 37 37 H 1.07996 * 119.95775 * 180.29473 * 20 19 4 38 38 H 1.08999 * 110.54870 * 298.59043 * 23 22 21 39 39 H 1.08995 * 110.55169 * 61.40869 * 23 22 21 40 40 H 1.08997 * 110.54547 * 118.59224 * 24 23 22 41 41 H 1.08997 * 110.54790 * 241.40552 * 24 23 22 42 42 H 0.96998 * 125.40856 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1926 0.0000 4 6 3.5925 1.1916 -0.0005 5 6 4.3324 2.4669 0.0000 6 8 3.7270 3.5205 0.0014 7 8 5.6799 2.4641 -0.0010 8 6 6.3418 3.7564 0.0002 9 1 5.7149 4.4862 -0.5123 10 6 6.5754 4.2085 1.4431 11 6 7.6655 3.6435 -0.7114 12 1 7.9781 2.6952 -1.1230 13 6 8.4773 4.7508 -0.8370 14 7 9.6327 4.6522 -1.4575 15 14 7.9368 6.3908 -0.1245 16 1 8.4180 6.5050 1.2757 17 1 8.5083 7.4955 -0.9359 18 1 6.4544 6.4759 -0.1469 19 6 4.2874 -0.0219 -0.0016 20 6 3.5935 -1.2103 0.0040 21 6 2.2018 -1.2054 0.0005 22 7 1.5022 -2.4112 0.0016 23 6 1.0751 -3.1474 1.2009 24 6 0.3550 -4.3873 0.6360 25 7 0.4534 -4.2184 -0.8215 26 6 1.1124 -3.0833 -1.0895 27 8 1.3356 -2.6977 -2.2207 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6545 2.1279 0.0004 32 1 5.6180 4.2902 1.9577 33 1 7.2022 3.4788 1.9556 34 1 7.0727 5.1785 1.4440 35 1 10.2036 5.4313 -1.5462 36 1 5.3674 -0.0264 -0.0025 37 1 4.1295 -2.1478 0.0079 38 1 1.9390 -3.4441 1.7956 39 1 0.3887 -2.5447 1.7955 40 1 0.8614 -5.2999 0.9501 41 1 -0.6886 -4.4000 0.9505 42 1 0.0972 -4.8312 -1.4836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:19 Heat of formation + Delta-G solvation = -85.758610 kcal Electronic energy + Delta-G solvation = -26166.841972 eV Core-core repulsion = 22304.944474 eV Total energy + Delta-G solvation = -3861.897498 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.45959 -41.53407 -39.94874 -37.73454 -37.50371 -35.48364 -35.20268 -33.85176 -32.70489 -31.36129 -29.71484 -28.05986 -27.37178 -26.05205 -23.86632 -23.52260 -23.09165 -22.08143 -21.02338 -19.29132 -18.98458 -18.54692 -18.05606 -17.68321 -17.64343 -17.02999 -16.58770 -16.14920 -16.06827 -15.39361 -15.25581 -15.09239 -14.81942 -14.63448 -14.55726 -14.36388 -14.30204 -13.94868 -13.73430 -13.42983 -13.33007 -13.17628 -12.99442 -12.87598 -12.85414 -12.32538 -12.23425 -11.81942 -11.70766 -11.57492 -11.46905 -11.25051 -10.84791 -10.49884 -10.10799 -9.84641 -9.69691 -8.45588 -6.54909 -0.57337 0.19999 1.22966 1.31147 1.35741 1.40747 1.45984 1.78957 1.95828 2.19188 2.53556 2.86996 2.98249 3.54632 3.60357 3.68662 3.70588 4.05553 4.11837 4.20529 4.26732 4.31810 4.37625 4.38135 4.45816 4.58126 4.69133 4.70680 4.71845 4.78102 4.90137 4.96074 5.00768 5.11438 5.17686 5.21162 5.29370 5.31890 5.43597 5.55817 5.87900 6.10032 6.17337 6.39237 6.48864 6.77678 7.09511 7.47689 8.70430 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.002692 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.229631 B =10398.802555 C =10754.540108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.090 4.090 3 C -0.052 4.052 4 C -0.128 4.128 5 C 0.496 3.504 6 O -0.541 6.541 7 O -0.345 6.345 8 C 0.193 3.807 9 H 0.031 0.969 10 C -0.163 4.163 11 C -0.541 4.541 12 H 0.047 0.953 13 C 0.030 3.970 14 N -0.930 5.930 15 Si 0.941 3.059 16 H -0.248 1.248 17 H -0.283 1.283 18 H -0.258 1.258 19 C -0.060 4.060 20 C -0.115 4.115 21 C 0.193 3.807 22 N -0.593 5.593 23 C 0.084 3.916 24 C 0.096 3.904 25 N -0.729 5.729 26 C 0.693 3.307 27 O -0.635 6.635 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.145 0.855 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.276 0.724 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.346 -20.130 11.513 32.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.092 4.092 3 C -0.071 4.071 4 C -0.129 4.129 5 C 0.343 3.657 6 O -0.434 6.434 7 O -0.261 6.261 8 C 0.138 3.862 9 H 0.049 0.951 10 C -0.220 4.220 11 C -0.578 4.578 12 H 0.065 0.935 13 C -0.170 4.170 14 N -0.568 5.568 15 Si 0.766 3.234 16 H -0.173 1.173 17 H -0.210 1.210 18 H -0.182 1.182 19 C -0.079 4.079 20 C -0.135 4.135 21 C 0.102 3.898 22 N -0.328 5.328 23 C -0.036 4.036 24 C -0.027 4.027 25 N -0.391 5.391 26 C 0.394 3.606 27 O -0.516 6.516 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -23.142 -19.453 10.937 32.149 hybrid contribution 0.475 0.829 -0.546 1.101 sum -22.666 -18.624 10.391 31.122 Atomic orbital electron populations 1.20722 0.88088 1.03090 1.03959 1.20251 0.98283 0.90923 0.99697 1.21100 0.91292 0.99077 0.95585 1.19291 0.93935 0.90344 1.09311 1.21688 0.81881 0.90082 0.72068 1.90740 1.70035 1.34633 1.47989 1.86557 1.19490 1.37614 1.82426 1.20696 0.91150 0.79253 0.95069 0.95125 1.22409 1.01425 1.01320 0.96870 1.20934 1.01708 0.97846 1.37324 0.93473 1.25576 0.94280 1.02314 0.94799 1.69959 1.11603 1.32327 1.42890 0.85974 0.79652 0.78527 0.79285 1.17256 1.20969 1.18214 1.21439 1.01300 0.90509 0.94611 1.21433 0.93140 0.98760 1.00139 1.17146 0.89712 0.83748 0.99226 1.44107 1.59058 1.21522 1.08071 1.22949 1.01261 0.92362 0.87059 1.22710 1.03603 0.98421 0.77989 1.45064 1.60199 1.23446 1.10355 1.16160 0.79004 0.81796 0.83675 1.90979 1.64340 1.72967 1.23270 0.88187 0.90641 0.92128 0.83762 0.92277 0.90900 0.92421 0.91476 0.83883 0.83074 0.87926 0.87658 0.87131 0.86830 0.71800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.76 71.24 0.70 -1.03 16 2 C -0.09 -2.11 5.89 -19.79 -0.12 -2.22 16 3 C -0.05 -1.47 9.23 22.51 0.21 -1.26 16 4 C -0.13 -4.30 5.88 -20.09 -0.12 -4.42 16 5 C 0.50 21.13 7.86 70.25 0.55 21.68 16 6 O -0.54 -25.01 15.60 19.80 0.31 -24.70 16 7 O -0.35 -16.46 9.11 -56.67 -0.52 -16.98 16 8 C 0.19 9.99 2.16 29.85 0.06 10.06 16 9 H 0.03 1.69 6.22 -2.39 -0.01 1.67 16 10 C -0.16 -7.29 9.03 71.98 0.65 -6.64 16 11 C -0.54 -32.34 9.48 25.60 0.24 -32.09 16 12 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 13 C 0.03 1.77 5.45 84.65 0.46 2.23 16 14 N -0.93 -57.59 13.96 21.45 0.30 -57.29 16 15 Si 0.94 44.65 24.37 68.60 1.67 46.32 16 16 H -0.25 -10.72 6.87 99.48 0.68 -10.04 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.26 -12.01 6.53 99.48 0.65 -11.36 16 19 C -0.06 -1.77 9.60 22.51 0.22 -1.55 16 20 C -0.12 -2.81 9.95 22.35 0.22 -2.59 16 21 C 0.19 4.45 5.40 38.38 0.21 4.66 16 22 N -0.59 -10.48 2.04 -646.71 -1.32 -11.80 16 23 C 0.08 0.52 7.61 86.65 0.66 1.18 16 24 C 0.10 0.20 8.06 86.65 0.70 0.90 16 25 N -0.73 -8.09 6.37 -477.32 -3.04 -11.14 16 26 C 0.69 15.26 7.97 179.57 1.43 16.69 16 27 O -0.63 -21.69 17.65 -3.97 -0.07 -21.76 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.25 8.08 -2.38 -0.02 1.23 16 30 H 0.06 1.10 6.96 -2.39 -0.02 1.08 16 31 H 0.14 3.95 7.64 -2.91 -0.02 3.92 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 33 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.06 2.55 3.27 -2.39 -0.01 2.54 16 35 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.14 4.32 7.60 -2.91 -0.02 4.30 16 37 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.11 -0.24 8.14 -2.39 -0.02 -0.25 16 41 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.44 3.57 8.96 -92.71 -0.83 2.74 16 Total: -1.00 -83.97 353.09 3.56 -80.42 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.15 Total: 11.34 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.07 Total: 5.59 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -4.06 Total: -80.23 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -0.28 Total: -63.44 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.67 Total: 46.32 kcal Total: -83.97 3.56 -80.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.344 kcal (2) G-P(sol) polarization free energy of solvation -83.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds