Wall clock time and date at job start Tue Mar 31 2020 12:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48495 * 109.47378 * 269.99778 * 3 2 1 5 5 H 1.48507 * 109.47229 * 29.99820 * 3 2 1 6 6 H 1.48506 * 109.47252 * 149.99634 * 3 2 1 7 7 C 1.37882 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99309 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00274 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99804 * 286.78508 * 10 9 7 12 12 C 1.53003 * 109.47122 * 265.18027 * 11 10 9 13 13 C 1.52991 * 117.50257 * 246.85895 * 12 11 10 14 14 C 1.52995 * 117.50239 * 178.19611 * 12 11 10 15 15 C 1.34766 * 119.99692 * 106.78678 * 10 9 7 16 16 O 1.21553 * 119.99865 * 175.95236 * 15 10 9 17 17 C 1.47864 * 120.00289 * 356.22356 * 15 10 9 18 18 C 1.39618 * 120.10698 * 332.89064 * 17 15 10 19 19 C 1.37985 * 119.98826 * 179.72373 * 18 17 15 20 20 C 1.38255 * 120.22265 * 0.57647 * 19 18 17 21 21 C 1.38940 * 120.22309 * 359.70203 * 20 19 18 22 22 N 1.39988 * 119.99735 * 180.02562 * 21 20 19 23 23 C 1.34776 * 120.00224 * 214.27439 * 22 21 20 24 24 O 1.21514 * 119.99766 * 4.94142 * 23 22 21 25 25 O 1.34645 * 120.00219 * 184.94619 * 23 22 21 26 26 C 1.38627 * 120.00474 * 359.97438 * 21 20 19 27 27 H 0.97002 * 119.99552 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46962 * 60.00883 * 9 7 2 29 29 H 1.08994 * 109.47371 * 300.00563 * 9 7 2 30 30 H 1.08994 * 109.47555 * 25.17994 * 11 10 9 31 31 H 1.08997 * 109.46676 * 145.18653 * 11 10 9 32 32 H 1.09006 * 115.54780 * 32.53332 * 12 11 10 33 33 H 1.09008 * 117.49870 * 0.02562 * 13 12 11 34 34 H 1.09002 * 117.50249 * 145.01520 * 13 12 11 35 35 H 1.08997 * 117.50282 * 214.98349 * 14 12 11 36 36 H 1.09002 * 117.49706 * 0.02562 * 14 12 11 37 37 H 1.07991 * 120.00684 * 0.02562 * 18 17 15 38 38 H 1.07998 * 119.88536 * 180.27583 * 19 18 17 39 39 H 1.07996 * 119.88512 * 179.71940 * 20 19 18 40 40 H 0.97003 * 120.00144 * 34.27360 * 22 21 20 41 41 H 0.96693 * 117.00065 * 180.02562 * 25 23 22 42 42 H 1.08007 * 120.10992 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5754 0.0001 11 6 3.8991 -3.3878 1.2150 12 6 5.2131 -3.3050 1.9944 13 6 6.0523 -4.5796 2.1019 14 6 5.2941 -4.0566 3.3245 15 6 4.5418 -3.0985 -1.1174 16 8 5.0137 -4.2185 -1.0972 17 6 4.5679 -2.3078 -2.3666 18 6 3.6017 -1.3260 -2.5943 19 6 3.6317 -0.5856 -3.7583 20 6 4.6093 -0.8203 -4.7074 21 6 5.5718 -1.7991 -4.4927 22 7 6.5598 -2.0324 -5.4566 23 6 7.0263 -3.2813 -5.6549 24 8 6.5274 -4.2174 -5.0621 25 8 8.0451 -3.4916 -6.5097 26 6 5.5544 -2.5438 -3.3236 27 1 -0.4849 0.8401 -0.0004 28 1 3.8752 -0.6798 0.8896 29 1 3.8746 -0.6808 -0.8904 30 1 3.0845 -3.0142 1.8354 31 1 3.7027 -4.4249 0.9432 32 1 5.7454 -2.3567 1.9190 33 1 5.6685 -5.4773 1.6170 34 1 7.1368 -4.4702 2.0975 35 1 5.8801 -3.6033 4.1240 36 1 4.4114 -4.6106 3.6442 37 1 2.8339 -1.1427 -1.8574 38 1 2.8862 0.1765 -3.9307 39 1 4.6250 -0.2408 -5.6185 40 1 6.9087 -1.2953 -5.9818 41 1 8.3450 -4.4043 -6.6192 42 1 6.3021 -3.3048 -3.1548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739073008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:09 Heat of formation + Delta-G solvation = -37.554733 kcal Electronic energy + Delta-G solvation = -26866.662407 eV Core-core repulsion = 23006.855186 eV Total energy + Delta-G solvation = -3859.807221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85566 -39.78939 -38.25649 -36.83568 -36.21477 -35.27027 -34.58177 -32.59364 -30.89222 -29.75926 -28.24917 -26.62746 -23.65080 -23.35941 -22.39817 -22.00874 -21.21462 -20.54503 -19.40050 -18.67708 -17.55280 -17.12887 -16.83339 -16.41876 -15.96306 -15.82558 -15.17619 -14.89673 -14.58797 -14.16383 -14.02753 -13.65117 -13.47593 -13.40970 -13.13516 -12.62343 -12.60103 -12.46142 -11.86359 -11.70475 -11.51713 -11.30468 -11.22342 -11.05996 -10.90315 -10.64754 -10.56962 -10.39923 -10.09572 -9.97618 -9.66177 -9.57729 -9.14485 -8.86878 -8.63575 -7.92760 -7.78028 -6.35233 -4.38240 1.24321 1.57985 2.19175 2.68815 3.09461 3.19467 3.21700 3.41734 3.69641 4.15539 4.18189 4.24259 4.43354 4.92978 5.02319 5.10636 5.20466 5.25969 5.32156 5.39852 5.63928 5.72640 5.77369 5.81801 5.88101 6.07421 6.17071 6.20374 6.27309 6.36456 6.38567 6.40427 6.41262 6.54262 6.63463 6.69138 6.83940 6.91106 7.19239 7.21205 7.26718 7.41896 8.02589 8.20753 8.35713 8.72503 8.89577 9.22661 10.75949 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.005228 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.904586 B = 5354.183162 C = 7619.827136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.082 3.918 3 Si 0.862 3.138 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.182 3.818 10 N -0.580 5.580 11 C 0.154 3.846 12 C -0.161 4.161 13 C -0.171 4.171 14 C -0.181 4.181 15 C 0.556 3.444 16 O -0.552 6.552 17 C -0.113 4.113 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.119 4.119 21 C 0.124 3.876 22 N -0.646 5.646 23 C 0.658 3.342 24 O -0.551 6.551 25 O -0.527 6.527 26 C -0.065 4.065 27 H 0.269 0.731 28 H 0.029 0.971 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.195 0.805 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.415 0.585 41 H 0.431 0.569 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.590 -0.219 -6.980 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.123 4.123 3 Si 0.687 3.313 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.102 0.898 9 C 0.062 3.938 10 N -0.309 5.309 11 C 0.031 3.969 12 C -0.180 4.180 13 C -0.208 4.208 14 C -0.218 4.218 15 C 0.345 3.655 16 O -0.432 6.432 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.136 4.136 20 C -0.140 4.140 21 C 0.032 3.968 22 N -0.299 5.299 23 C 0.410 3.590 24 O -0.437 6.437 25 O -0.338 6.338 26 C -0.086 4.086 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.211 0.789 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.251 0.749 41 H 0.291 0.709 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.369 -0.789 -6.667 14.074 hybrid contribution 0.708 0.852 -0.423 1.186 sum 13.077 0.063 -7.090 14.876 Atomic orbital electron populations 1.69889 1.06240 1.27553 1.47831 1.24901 0.94727 0.98887 0.93814 0.87048 0.80797 0.83928 0.79478 1.19197 1.20634 1.18528 1.21322 0.88951 0.95340 1.52747 0.89827 1.20588 0.95814 0.78746 0.98693 1.47705 1.58404 1.14981 1.09808 1.20877 0.94939 0.95841 0.85239 1.22743 0.99745 0.96512 0.99014 1.22938 0.98014 0.98468 1.01370 1.22918 1.02951 1.04573 0.91385 1.18209 0.78047 0.85935 0.83313 1.90704 1.47485 1.19784 1.85244 1.19861 0.97655 0.98683 0.95498 1.23320 0.99138 0.91491 0.98312 1.21033 0.98261 1.00769 0.93570 1.20976 0.93861 0.99079 1.00066 1.17172 0.90976 1.00014 0.88617 1.41772 1.40566 1.07353 1.40185 1.17782 0.78818 0.83972 0.78398 1.91172 1.60181 1.41477 1.50908 1.84139 1.49138 1.38903 1.61578 1.21118 0.98838 0.98357 0.90290 0.92045 0.95260 0.92736 0.89045 0.90923 0.88155 0.88609 0.89664 0.89251 0.88833 0.78910 0.84983 0.85693 0.74884 0.70855 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.02 13.96 55.43 0.77 -23.24 16 2 C 0.08 2.08 5.44 -17.82 -0.10 1.98 16 3 Si 0.86 18.53 27.47 -169.99 -4.67 13.86 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.42 6.54 56.52 0.37 -5.05 16 7 C -0.55 -13.52 7.61 -34.44 -0.26 -13.78 16 8 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 9 C 0.18 3.94 3.72 -5.19 -0.02 3.92 16 10 N -0.58 -12.13 2.52 -176.17 -0.44 -12.57 16 11 C 0.15 2.91 5.52 -4.04 -0.02 2.89 16 12 C -0.16 -2.65 5.98 -90.63 -0.54 -3.19 16 13 C -0.17 -2.58 10.18 -26.70 -0.27 -2.85 16 14 C -0.18 -2.46 10.25 -26.70 -0.27 -2.73 16 15 C 0.56 12.13 7.44 -12.33 -0.09 12.04 16 16 O -0.55 -13.06 16.34 5.32 0.09 -12.97 16 17 C -0.11 -2.27 5.51 -104.99 -0.58 -2.85 16 18 C -0.10 -2.02 7.43 -39.16 -0.29 -2.31 16 19 C -0.12 -1.88 10.02 -39.67 -0.40 -2.28 16 20 C -0.12 -1.64 9.96 -39.32 -0.39 -2.03 16 21 C 0.12 1.87 6.26 -83.73 -0.52 1.35 16 22 N -0.65 -7.72 5.35 -14.30 -0.08 -7.79 16 23 C 0.66 8.65 8.86 54.05 0.48 9.13 16 24 O -0.55 -9.70 14.87 -19.28 -0.29 -9.99 16 25 O -0.53 -4.66 13.48 -40.34 -0.54 -5.21 16 26 C -0.07 -1.20 8.19 -38.98 -0.32 -1.52 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 29 H 0.06 1.15 3.60 -51.93 -0.19 0.97 16 30 H 0.09 1.73 7.82 -51.93 -0.41 1.32 16 31 H 0.07 1.40 7.38 -51.93 -0.38 1.02 16 32 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.10 1.52 8.04 -51.92 -0.42 1.10 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.19 4.17 3.38 -52.49 -0.18 3.99 16 38 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.41 3.42 8.93 -40.82 -0.36 3.06 16 41 H 0.43 1.96 9.11 45.56 0.42 2.38 16 42 H 0.14 2.78 6.29 -52.48 -0.33 2.45 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -32.09 353.89 -7.78 -39.86 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -4.35 Total: 14.95 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -3.60 Total: -2.24 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.25 Total: -43.61 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.74 Total: -28.17 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.67 Total: 13.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.09 -7.78 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739073008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.310 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds