Wall clock time and date at job start Tue Mar 31 2020 12:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48495 * 109.47378 * 269.99778 * 3 2 1 5 5 H 1.48507 * 109.47229 * 29.99820 * 3 2 1 6 6 H 1.48506 * 109.47252 * 149.99634 * 3 2 1 7 7 C 1.37882 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99309 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00274 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99804 * 286.78508 * 10 9 7 12 12 C 1.53003 * 109.47122 * 265.18027 * 11 10 9 13 13 C 1.52991 * 117.50257 * 246.85895 * 12 11 10 14 14 C 1.52995 * 117.50239 * 178.19611 * 12 11 10 15 15 C 1.34766 * 119.99692 * 106.78678 * 10 9 7 16 16 O 1.21553 * 119.99865 * 175.95236 * 15 10 9 17 17 C 1.47864 * 120.00289 * 356.22356 * 15 10 9 18 18 C 1.39618 * 120.10698 * 332.89064 * 17 15 10 19 19 C 1.37985 * 119.98826 * 179.72373 * 18 17 15 20 20 C 1.38255 * 120.22265 * 0.57647 * 19 18 17 21 21 C 1.38940 * 120.22309 * 359.70203 * 20 19 18 22 22 N 1.39988 * 119.99735 * 180.02562 * 21 20 19 23 23 C 1.34776 * 120.00224 * 214.27439 * 22 21 20 24 24 O 1.21514 * 119.99766 * 4.94142 * 23 22 21 25 25 O 1.34645 * 120.00219 * 184.94619 * 23 22 21 26 26 C 1.38627 * 120.00474 * 359.97438 * 21 20 19 27 27 H 0.97002 * 119.99552 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46962 * 60.00883 * 9 7 2 29 29 H 1.08994 * 109.47371 * 300.00563 * 9 7 2 30 30 H 1.08994 * 109.47555 * 25.17994 * 11 10 9 31 31 H 1.08997 * 109.46676 * 145.18653 * 11 10 9 32 32 H 1.09006 * 115.54780 * 32.53332 * 12 11 10 33 33 H 1.09008 * 117.49870 * 0.02562 * 13 12 11 34 34 H 1.09002 * 117.50249 * 145.01520 * 13 12 11 35 35 H 1.08997 * 117.50282 * 214.98349 * 14 12 11 36 36 H 1.09002 * 117.49706 * 0.02562 * 14 12 11 37 37 H 1.07991 * 120.00684 * 0.02562 * 18 17 15 38 38 H 1.07998 * 119.88536 * 180.27583 * 19 18 17 39 39 H 1.07996 * 119.88512 * 179.71940 * 20 19 18 40 40 H 0.97003 * 120.00144 * 34.27360 * 22 21 20 41 41 H 0.96693 * 117.00065 * 180.02562 * 25 23 22 42 42 H 1.08007 * 120.10992 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5754 0.0001 11 6 3.8991 -3.3878 1.2150 12 6 5.2131 -3.3050 1.9944 13 6 6.0523 -4.5796 2.1019 14 6 5.2941 -4.0566 3.3245 15 6 4.5418 -3.0985 -1.1174 16 8 5.0137 -4.2185 -1.0972 17 6 4.5679 -2.3078 -2.3666 18 6 3.6017 -1.3260 -2.5943 19 6 3.6317 -0.5856 -3.7583 20 6 4.6093 -0.8203 -4.7074 21 6 5.5718 -1.7991 -4.4927 22 7 6.5598 -2.0324 -5.4566 23 6 7.0263 -3.2813 -5.6549 24 8 6.5274 -4.2174 -5.0621 25 8 8.0451 -3.4916 -6.5097 26 6 5.5544 -2.5438 -3.3236 27 1 -0.4849 0.8401 -0.0004 28 1 3.8752 -0.6798 0.8896 29 1 3.8746 -0.6808 -0.8904 30 1 3.0845 -3.0142 1.8354 31 1 3.7027 -4.4249 0.9432 32 1 5.7454 -2.3567 1.9190 33 1 5.6685 -5.4773 1.6170 34 1 7.1368 -4.4702 2.0975 35 1 5.8801 -3.6033 4.1240 36 1 4.4114 -4.6106 3.6442 37 1 2.8339 -1.1427 -1.8574 38 1 2.8862 0.1765 -3.9307 39 1 4.6250 -0.2408 -5.6185 40 1 6.9087 -1.2953 -5.9818 41 1 8.3450 -4.4043 -6.6192 42 1 6.3021 -3.3048 -3.1548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739073008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:08 Heat of formation + Delta-G solvation = -60.460419 kcal Electronic energy + Delta-G solvation = -26867.655672 eV Core-core repulsion = 23006.855186 eV Total energy + Delta-G solvation = -3860.800486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.01171 -41.23542 -39.54277 -38.18356 -37.29890 -36.77955 -35.86539 -34.49917 -32.23543 -31.15959 -29.93542 -28.15826 -24.94885 -24.81090 -24.00258 -23.19413 -22.40335 -21.89727 -20.70068 -19.89949 -19.03886 -18.75806 -18.07257 -17.82910 -17.24096 -17.04968 -16.65115 -16.40528 -16.02284 -15.76321 -15.37411 -14.91297 -14.82613 -14.70852 -14.63925 -14.34740 -14.07039 -13.76454 -13.38700 -13.09274 -12.72809 -12.64557 -12.61209 -12.53604 -12.37353 -12.06927 -12.01438 -11.83911 -11.71744 -11.35249 -11.26923 -10.94410 -10.80850 -10.69802 -9.99902 -9.47928 -9.20511 -8.30916 -6.39497 -0.10538 0.26004 1.23378 1.41960 1.45319 1.54451 1.59537 1.90813 2.14436 2.35088 2.82631 2.93095 3.01310 3.46220 3.69090 3.81503 3.93362 3.99327 4.10776 4.17398 4.34751 4.36443 4.46766 4.50480 4.60631 4.73589 4.73998 4.78701 4.90515 4.92586 4.99454 5.13676 5.23128 5.24513 5.25736 5.37217 5.48804 5.51714 5.66037 5.73076 5.96629 6.12844 6.26892 6.58669 6.67601 7.16871 7.28944 7.30369 8.84163 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.005228 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.904586 B = 5354.183162 C = 7619.827136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.035 3.965 3 Si 0.923 3.077 4 H -0.242 1.242 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.542 4.542 8 H 0.035 0.965 9 C 0.193 3.807 10 N -0.583 5.583 11 C 0.153 3.847 12 C -0.181 4.181 13 C -0.172 4.172 14 C -0.152 4.152 15 C 0.548 3.452 16 O -0.583 6.583 17 C -0.136 4.136 18 C -0.127 4.127 19 C -0.113 4.113 20 C -0.093 4.093 21 C 0.136 3.864 22 N -0.631 5.631 23 C 0.662 3.338 24 O -0.601 6.601 25 O -0.506 6.506 26 C -0.080 4.080 27 H 0.272 0.728 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.168 0.832 38 H 0.155 0.845 39 H 0.178 0.822 40 H 0.437 0.563 41 H 0.450 0.550 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.865 2.198 -8.786 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.166 4.166 3 Si 0.745 3.255 4 H -0.165 1.165 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.580 4.580 8 H 0.053 0.947 9 C 0.072 3.928 10 N -0.311 5.311 11 C 0.030 3.970 12 C -0.200 4.200 13 C -0.209 4.209 14 C -0.189 4.189 15 C 0.338 3.662 16 O -0.465 6.465 17 C -0.140 4.140 18 C -0.145 4.145 19 C -0.132 4.132 20 C -0.113 4.113 21 C 0.042 3.958 22 N -0.286 5.286 23 C 0.415 3.585 24 O -0.491 6.491 25 O -0.319 6.319 26 C -0.101 4.101 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.185 0.815 38 H 0.173 0.827 39 H 0.195 0.805 40 H 0.277 0.723 41 H 0.314 0.686 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.696 1.633 -8.508 17.059 hybrid contribution 0.019 -0.025 0.017 0.035 sum 14.715 1.608 -8.491 17.065 Atomic orbital electron populations 1.70032 1.08255 1.28695 1.49755 1.25670 0.95307 1.02570 0.93050 0.86067 0.79692 0.78774 0.80966 1.16506 1.20968 1.17082 1.21279 0.90505 0.93635 1.52543 0.94679 1.20452 0.93546 0.79353 0.99455 1.47794 1.57965 1.14957 1.10385 1.20900 0.96466 0.94708 0.84888 1.22596 0.98758 0.97208 1.01479 1.22942 0.98658 0.96977 1.02369 1.23038 1.02833 1.02442 0.90616 1.18683 0.77519 0.85874 0.84161 1.90662 1.49007 1.21028 1.85824 1.19750 0.99274 0.99686 0.95255 1.23022 0.98776 0.92909 0.99782 1.21306 0.99151 1.00249 0.92462 1.21391 0.91373 0.97719 1.00797 1.17223 0.91610 0.99113 0.87820 1.41596 1.39715 1.07878 1.39390 1.17899 0.78933 0.83616 0.78073 1.91167 1.61902 1.43177 1.52898 1.84128 1.47190 1.40728 1.59833 1.21012 0.98417 0.98976 0.91701 0.91873 0.94771 0.91129 0.89911 0.92321 0.88348 0.90030 0.88354 0.86697 0.88079 0.81533 0.82710 0.80469 0.72256 0.68606 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.41 13.96 21.45 0.30 -52.11 16 2 C 0.04 1.81 5.44 84.66 0.46 2.27 16 3 Si 0.92 37.41 27.47 68.60 1.88 39.30 16 4 H -0.24 -8.79 7.11 99.48 0.71 -8.08 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.25 -9.41 6.54 99.48 0.65 -8.76 16 7 C -0.54 -28.06 7.61 25.60 0.19 -27.86 16 8 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 9 C 0.19 8.53 3.72 85.63 0.32 8.85 16 10 N -0.58 -25.65 2.52 -829.57 -2.09 -27.74 16 11 C 0.15 6.13 5.52 86.38 0.48 6.61 16 12 C -0.18 -6.07 5.98 -10.80 -0.06 -6.14 16 13 C -0.17 -5.21 10.18 30.61 0.31 -4.90 16 14 C -0.15 -3.96 10.25 30.62 0.31 -3.64 16 15 C 0.55 25.17 7.44 86.79 0.65 25.82 16 16 O -0.58 -29.29 16.34 -3.88 -0.06 -29.35 16 17 C -0.14 -5.58 5.51 -20.10 -0.11 -5.69 16 18 C -0.13 -4.85 7.43 22.54 0.17 -4.68 16 19 C -0.11 -3.28 10.02 22.21 0.22 -3.06 16 20 C -0.09 -2.13 9.96 22.44 0.22 -1.90 16 21 C 0.14 3.73 6.26 38.10 0.24 3.97 16 22 N -0.63 -12.96 5.35 -429.55 -2.30 -15.25 16 23 C 0.66 16.00 8.86 129.79 1.15 17.15 16 24 O -0.60 -21.04 14.87 19.80 0.29 -20.74 16 25 O -0.51 -7.43 13.48 -55.54 -0.75 -8.18 16 26 C -0.08 -2.95 8.19 22.66 0.19 -2.77 16 27 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 29 H 0.07 2.97 3.60 -2.39 -0.01 2.97 16 30 H 0.08 3.36 7.82 -2.39 -0.02 3.34 16 31 H 0.06 2.46 7.38 -2.39 -0.02 2.44 16 32 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 33 H 0.08 2.69 8.04 -2.38 -0.02 2.67 16 34 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.17 7.35 3.38 -2.92 -0.01 7.34 16 38 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.18 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.44 5.12 8.93 -92.71 -0.83 4.29 16 41 H 0.45 2.89 9.11 -74.06 -0.67 2.22 16 42 H 0.12 4.86 6.29 -2.91 -0.02 4.85 16 Total: -1.00 -75.28 353.89 1.55 -73.73 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.47 Total: 36.32 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 4.73 Total: 4.03 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -4.09 Total: -95.10 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: -0.52 Total: -58.28 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 1.88 Total: 39.30 kcal Total: -75.28 1.55 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739073008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.268 kcal (2) G-P(sol) polarization free energy of solvation -75.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds