Wall clock time and date at job start Tue Mar 31 2020 12:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00137 * 2 1 4 4 H 1.48498 * 109.46868 * 270.00287 * 3 2 1 5 5 H 1.48494 * 109.46873 * 30.00240 * 3 2 1 6 6 H 1.48493 * 109.46781 * 150.00177 * 3 2 1 7 7 C 1.37877 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99979 * 181.87028 * 7 2 1 9 9 C 1.50702 * 120.00094 * 1.86607 * 7 2 1 10 10 C 1.53008 * 115.54925 * 84.68869 * 9 7 2 11 11 O 1.45205 * 109.46760 * 55.29255 * 10 9 7 12 12 C 1.34227 * 116.99731 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00310 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99971 * 179.97438 * 12 11 10 15 15 N 1.46494 * 109.47332 * 180.02562 * 14 12 11 16 16 C 1.34776 * 120.00004 * 180.02562 * 15 14 12 17 17 O 1.21586 * 120.00278 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99794 * 180.02562 * 16 15 14 19 19 C 1.39947 * 120.00015 * 175.31880 * 18 16 15 20 20 C 1.38868 * 120.07083 * 215.55870 * 19 18 16 21 21 C 1.38107 * 119.92638 * 179.77151 * 20 19 18 22 22 C 1.38278 * 120.07510 * 0.50100 * 21 20 19 23 23 C 1.38281 * 120.13868 * 359.75190 * 22 21 20 24 24 C 1.38116 * 120.06824 * 359.97438 * 23 22 21 25 25 C 1.52991 * 117.50071 * 230.36125 * 9 7 2 26 26 C 1.53005 * 117.49953 * 299.02411 * 9 7 2 27 27 H 0.97008 * 119.99944 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47082 * 295.29865 * 10 9 7 29 29 H 1.08996 * 109.46922 * 175.29435 * 10 9 7 30 30 H 1.08997 * 109.47283 * 300.01026 * 14 12 11 31 31 H 1.09001 * 109.46785 * 60.00729 * 14 12 11 32 32 H 0.97004 * 119.99795 * 0.02562 * 15 14 12 33 33 H 0.97003 * 120.00060 * 355.32094 * 18 16 15 34 34 H 1.08000 * 120.03433 * 0.02562 * 20 19 18 35 35 H 1.08006 * 119.96406 * 180.25412 * 21 20 19 36 36 H 1.07998 * 119.93635 * 179.72262 * 22 21 20 37 37 H 1.07997 * 119.96895 * 180.02562 * 23 22 21 38 38 H 1.08004 * 120.03486 * 179.97438 * 24 23 22 39 39 H 1.09006 * 117.50343 * 215.00120 * 25 9 7 40 40 H 1.09000 * 117.50076 * 0.02693 * 25 9 7 41 41 H 1.09002 * 117.49872 * 359.97342 * 26 9 7 42 42 H 1.09002 * 117.49682 * 144.97523 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0841 -1.1944 0.0300 9 6 1.2515 -2.4988 -0.0436 10 6 0.8500 -2.9832 -1.4383 11 8 2.0300 -3.0651 -2.2805 12 6 1.8487 -3.4778 -3.5449 13 8 0.7408 -3.7607 -3.9351 14 6 3.0270 -3.5871 -4.4781 15 7 2.5700 -4.0543 -5.7891 16 6 3.4565 -4.2279 -6.7893 17 8 4.6357 -3.9972 -6.6034 18 7 3.0359 -4.6573 -7.9956 19 6 3.9388 -4.7441 -9.0613 20 6 3.5202 -4.4541 -10.3533 21 6 4.4149 -4.5361 -11.4022 22 6 5.7236 -4.9164 -11.1685 23 6 6.1423 -5.2109 -9.8839 24 6 5.2538 -5.1253 -8.8298 25 6 1.6186 -3.5609 0.9946 26 6 0.2950 -2.8010 1.1117 27 1 -0.4850 0.8401 -0.0004 28 1 0.1394 -2.2821 -1.8758 29 1 0.3889 -3.9679 -1.3621 30 1 3.4978 -2.6098 -4.5848 31 1 3.7485 -4.2954 -4.0708 32 1 1.6292 -4.2388 -5.9373 33 1 2.1073 -4.9063 -8.1251 34 1 2.4971 -4.1608 -10.5370 35 1 4.0910 -4.3067 -12.4067 36 1 6.4202 -4.9841 -11.9910 37 1 7.1652 -5.5072 -9.7045 38 1 5.5813 -5.3559 -7.8268 39 1 1.5741 -4.6049 0.6841 40 1 2.4045 -3.3159 1.7091 41 1 0.2106 -2.0562 1.9032 42 1 -0.6204 -3.3446 0.8781 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:33 Heat of formation + Delta-G solvation = -54.698901 kcal Electronic energy + Delta-G solvation = -25190.255508 eV Core-core repulsion = 21329.704860 eV Total energy + Delta-G solvation = -3860.550648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93977 -39.99344 -38.78027 -36.97932 -35.55593 -35.01599 -34.59775 -31.99505 -31.11099 -30.12689 -28.32078 -26.45245 -25.22181 -23.23076 -22.69572 -21.27721 -21.04069 -20.64712 -19.36359 -18.96210 -18.03693 -17.05738 -16.56003 -16.39695 -16.31763 -15.64041 -15.55800 -15.19613 -14.76113 -14.55596 -14.21663 -14.10421 -13.79353 -13.61790 -13.36679 -13.04724 -12.80304 -12.16170 -12.10342 -11.94596 -11.67755 -11.49921 -10.99966 -10.92759 -10.66204 -10.58219 -10.38702 -10.29613 -10.25029 -9.99914 -9.59854 -9.41691 -9.13575 -8.97634 -8.50315 -8.34536 -8.24698 -6.10415 -4.16498 1.07757 1.20448 2.14084 2.46246 2.86812 3.17157 3.27301 3.34313 3.37661 3.62810 3.91866 4.36281 4.67083 4.74085 4.92861 4.94935 5.18296 5.18976 5.26775 5.29571 5.32552 5.37677 5.40342 5.78692 5.86481 6.01721 6.05291 6.12020 6.14462 6.22244 6.28807 6.36980 6.40432 6.57314 6.61992 6.67862 6.83952 6.97587 7.02925 7.26818 7.43122 7.61814 7.82754 8.11218 8.23897 8.34427 8.85581 9.49867 10.98520 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.002299 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.157181 B =12176.823217 C =12758.256128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.486 4.486 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.117 3.883 11 O -0.324 6.324 12 C 0.452 3.548 13 O -0.524 6.524 14 C 0.144 3.856 15 N -0.731 5.731 16 C 0.710 3.290 17 O -0.571 6.571 18 N -0.687 5.687 19 C 0.166 3.834 20 C -0.148 4.148 21 C -0.103 4.103 22 C -0.140 4.140 23 C -0.102 4.102 24 C -0.119 4.119 25 C -0.207 4.207 26 C -0.140 4.140 27 H 0.261 0.739 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.409 0.591 33 H 0.409 0.591 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -10.852 -18.761 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.524 4.524 8 H 0.082 0.918 9 C 0.032 3.968 10 C 0.044 3.956 11 O -0.237 6.237 12 C 0.295 3.705 13 O -0.416 6.416 14 C 0.019 3.981 15 N -0.390 5.390 16 C 0.410 3.590 17 O -0.447 6.447 18 N -0.334 5.334 19 C 0.071 3.929 20 C -0.169 4.169 21 C -0.122 4.122 22 C -0.159 4.159 23 C -0.121 4.121 24 C -0.140 4.140 25 C -0.244 4.244 26 C -0.178 4.178 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.247 0.753 33 H 0.244 0.756 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.095 -10.536 -18.515 22.158 hybrid contribution -0.854 0.795 -0.122 1.173 sum 5.241 -9.741 -18.637 21.673 Atomic orbital electron populations 1.69996 1.05882 1.26684 1.49443 1.25020 0.94898 0.99136 0.94494 0.86567 0.79933 0.83147 0.78257 1.20552 1.21245 1.19696 1.20368 0.92657 0.88093 1.51292 0.91790 1.18790 0.99607 0.94099 0.84299 1.22934 0.83520 0.98596 0.90575 1.86537 1.41172 1.75484 1.20538 1.23278 0.89767 0.73891 0.83558 1.90603 1.26566 1.47349 1.77033 1.20487 0.93372 1.03895 0.80378 1.44769 1.11576 1.72115 1.10513 1.15680 0.85111 0.78243 0.79956 1.90958 1.14951 1.57144 1.81672 1.42528 1.12994 1.69281 1.08629 1.17523 0.90323 0.98766 0.86284 1.20900 1.00730 1.03708 0.91570 1.20911 0.93357 0.99411 0.98476 1.21139 0.96160 1.01513 0.97041 1.21090 0.99530 0.99163 0.92335 1.21370 0.92472 0.99426 1.00693 1.23065 0.99842 0.95562 1.05954 1.22528 0.91242 1.01400 1.02594 0.92926 0.90743 0.93939 0.86850 0.87050 0.75333 0.75575 0.85757 0.85780 0.86106 0.85754 0.84103 0.91565 0.89982 0.89145 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.41 12.73 55.43 0.71 -23.70 16 2 C 0.07 1.81 5.43 -17.82 -0.10 1.71 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.49 -12.92 8.59 -34.44 -0.30 -13.22 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.03 0.78 1.72 -155.66 -0.27 0.51 16 10 C 0.12 2.62 5.34 37.16 0.20 2.81 16 11 O -0.32 -6.64 9.97 -39.25 -0.39 -7.03 16 12 C 0.45 7.79 8.03 36.01 0.29 8.08 16 13 O -0.52 -9.76 15.42 -18.75 -0.29 -10.05 16 14 C 0.14 1.95 6.27 -5.20 -0.03 1.92 16 15 N -0.73 -8.79 5.53 -66.42 -0.37 -9.16 16 16 C 0.71 9.01 8.41 -86.92 -0.73 8.28 16 17 O -0.57 -9.04 13.82 5.29 0.07 -8.97 16 18 N -0.69 -6.76 5.34 -14.22 -0.08 -6.84 16 19 C 0.17 1.75 6.29 -83.69 -0.53 1.23 16 20 C -0.15 -1.28 9.97 -39.40 -0.39 -1.68 16 21 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 22 C -0.14 -1.13 10.04 -39.55 -0.40 -1.53 16 23 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 16 24 C -0.12 -1.35 8.69 -39.39 -0.34 -1.69 16 25 C -0.21 -4.36 9.93 -26.70 -0.27 -4.62 16 26 C -0.14 -3.16 9.26 -26.69 -0.25 -3.41 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.07 1.83 8.13 -51.93 -0.42 1.40 16 29 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.41 4.47 7.46 -40.82 -0.30 4.16 16 33 H 0.41 2.75 8.84 -40.82 -0.36 2.39 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.14 1.80 6.28 -52.48 -0.33 1.47 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -31.41 367.71 -9.34 -40.75 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.61 Total: 7.81 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -3.90 Total: -4.18 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.26 Total: -39.70 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.61 Total: -26.06 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.41 -9.34 -40.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.949 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds