Wall clock time and date at job start Tue Mar 31 2020 12:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00137 * 2 1 4 4 H 1.48498 * 109.46868 * 270.00287 * 3 2 1 5 5 H 1.48494 * 109.46873 * 30.00240 * 3 2 1 6 6 H 1.48493 * 109.46781 * 150.00177 * 3 2 1 7 7 C 1.37877 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99979 * 181.87028 * 7 2 1 9 9 C 1.50702 * 120.00094 * 1.86607 * 7 2 1 10 10 C 1.53008 * 115.54925 * 84.68869 * 9 7 2 11 11 O 1.45205 * 109.46760 * 55.29255 * 10 9 7 12 12 C 1.34227 * 116.99731 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00310 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99971 * 179.97438 * 12 11 10 15 15 N 1.46494 * 109.47332 * 180.02562 * 14 12 11 16 16 C 1.34776 * 120.00004 * 180.02562 * 15 14 12 17 17 O 1.21586 * 120.00278 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99794 * 180.02562 * 16 15 14 19 19 C 1.39947 * 120.00015 * 175.31880 * 18 16 15 20 20 C 1.38868 * 120.07083 * 215.55870 * 19 18 16 21 21 C 1.38107 * 119.92638 * 179.77151 * 20 19 18 22 22 C 1.38278 * 120.07510 * 0.50100 * 21 20 19 23 23 C 1.38281 * 120.13868 * 359.75190 * 22 21 20 24 24 C 1.38116 * 120.06824 * 359.97438 * 23 22 21 25 25 C 1.52991 * 117.50071 * 230.36125 * 9 7 2 26 26 C 1.53005 * 117.49953 * 299.02411 * 9 7 2 27 27 H 0.97008 * 119.99944 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47082 * 295.29865 * 10 9 7 29 29 H 1.08996 * 109.46922 * 175.29435 * 10 9 7 30 30 H 1.08997 * 109.47283 * 300.01026 * 14 12 11 31 31 H 1.09001 * 109.46785 * 60.00729 * 14 12 11 32 32 H 0.97004 * 119.99795 * 0.02562 * 15 14 12 33 33 H 0.97003 * 120.00060 * 355.32094 * 18 16 15 34 34 H 1.08000 * 120.03433 * 0.02562 * 20 19 18 35 35 H 1.08006 * 119.96406 * 180.25412 * 21 20 19 36 36 H 1.07998 * 119.93635 * 179.72262 * 22 21 20 37 37 H 1.07997 * 119.96895 * 180.02562 * 23 22 21 38 38 H 1.08004 * 120.03486 * 179.97438 * 24 23 22 39 39 H 1.09006 * 117.50343 * 215.00120 * 25 9 7 40 40 H 1.09000 * 117.50076 * 0.02693 * 25 9 7 41 41 H 1.09002 * 117.49872 * 359.97342 * 26 9 7 42 42 H 1.09002 * 117.49682 * 144.97523 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0841 -1.1944 0.0300 9 6 1.2515 -2.4988 -0.0436 10 6 0.8500 -2.9832 -1.4383 11 8 2.0300 -3.0651 -2.2805 12 6 1.8487 -3.4778 -3.5449 13 8 0.7408 -3.7607 -3.9351 14 6 3.0270 -3.5871 -4.4781 15 7 2.5700 -4.0543 -5.7891 16 6 3.4565 -4.2279 -6.7893 17 8 4.6357 -3.9972 -6.6034 18 7 3.0359 -4.6573 -7.9956 19 6 3.9388 -4.7441 -9.0613 20 6 3.5202 -4.4541 -10.3533 21 6 4.4149 -4.5361 -11.4022 22 6 5.7236 -4.9164 -11.1685 23 6 6.1423 -5.2109 -9.8839 24 6 5.2538 -5.1253 -8.8298 25 6 1.6186 -3.5609 0.9946 26 6 0.2950 -2.8010 1.1117 27 1 -0.4850 0.8401 -0.0004 28 1 0.1394 -2.2821 -1.8758 29 1 0.3889 -3.9679 -1.3621 30 1 3.4978 -2.6098 -4.5848 31 1 3.7485 -4.2954 -4.0708 32 1 1.6292 -4.2388 -5.9373 33 1 2.1073 -4.9063 -8.1251 34 1 2.4971 -4.1608 -10.5370 35 1 4.0910 -4.3067 -12.4067 36 1 6.4202 -4.9841 -11.9910 37 1 7.1652 -5.5072 -9.7045 38 1 5.5813 -5.3559 -7.8268 39 1 1.5741 -4.6049 0.6841 40 1 2.4045 -3.3159 1.7091 41 1 0.2106 -2.0562 1.9032 42 1 -0.6204 -3.3446 0.8781 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:32 Heat of formation + Delta-G solvation = -73.095249 kcal Electronic energy + Delta-G solvation = -25191.053233 eV Core-core repulsion = 21329.704860 eV Total energy + Delta-G solvation = -3861.348373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.95972 -41.33299 -39.61361 -38.64653 -37.13967 -35.89120 -35.72304 -34.01198 -31.78359 -31.03196 -29.52163 -28.05770 -27.11455 -24.03602 -23.44190 -22.96876 -22.07470 -21.91461 -21.21796 -19.98008 -18.89012 -18.59964 -18.02453 -17.71553 -17.28961 -16.99470 -16.69897 -16.55343 -16.18869 -15.79868 -15.38753 -15.22956 -14.83175 -14.77477 -14.51216 -14.21335 -13.84746 -13.72949 -13.53686 -13.49998 -12.91243 -12.84389 -12.63943 -12.40216 -12.16650 -12.09383 -11.82009 -11.71107 -11.55618 -11.38492 -11.17226 -10.88598 -10.46830 -10.44862 -10.06247 -9.82205 -9.08951 -8.13421 -6.24272 0.36779 0.51466 1.04458 1.10397 1.41185 1.43444 1.52361 1.87695 1.94045 2.42200 2.93361 3.02716 3.15769 3.35968 3.64998 4.03912 4.12529 4.12778 4.20585 4.28399 4.35401 4.37253 4.45896 4.56629 4.61058 4.63981 4.67340 4.80013 4.98543 5.03400 5.15269 5.19508 5.33913 5.39303 5.41972 5.57581 5.60627 5.65544 5.67673 5.75740 5.80966 6.14182 6.35072 6.63536 6.78644 6.81064 7.28739 7.44335 8.94820 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.002299 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.157181 B =12176.823217 C =12758.256128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.498 4.498 8 H 0.055 0.945 9 C -0.002 4.002 10 C 0.129 3.871 11 O -0.338 6.338 12 C 0.455 3.545 13 O -0.538 6.538 14 C 0.155 3.845 15 N -0.724 5.724 16 C 0.709 3.291 17 O -0.605 6.605 18 N -0.673 5.673 19 C 0.143 3.857 20 C -0.148 4.148 21 C -0.103 4.103 22 C -0.139 4.139 23 C -0.113 4.113 24 C -0.145 4.145 25 C -0.180 4.180 26 C -0.143 4.143 27 H 0.260 0.740 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.416 0.584 33 H 0.423 0.577 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 -11.430 -20.628 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.536 4.536 8 H 0.073 0.927 9 C -0.002 4.002 10 C 0.055 3.945 11 O -0.252 6.252 12 C 0.299 3.701 13 O -0.429 6.429 14 C 0.030 3.970 15 N -0.384 5.384 16 C 0.410 3.590 17 O -0.484 6.484 18 N -0.322 5.322 19 C 0.048 3.952 20 C -0.169 4.169 21 C -0.122 4.122 22 C -0.158 4.158 23 C -0.131 4.131 24 C -0.165 4.165 25 C -0.217 4.217 26 C -0.180 4.180 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.254 0.746 33 H 0.262 0.738 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.565 -11.138 -20.411 24.161 hybrid contribution -0.976 0.919 0.363 1.389 sum 5.589 -10.219 -20.048 23.186 Atomic orbital electron populations 1.70091 1.06946 1.27159 1.50531 1.25676 0.95625 1.01956 0.94473 0.85696 0.78963 0.79745 0.78129 1.20463 1.20992 1.19149 1.20610 0.92479 0.89659 1.50856 0.92698 1.18924 1.00994 0.94586 0.85701 1.22561 0.83540 0.98454 0.89937 1.86525 1.40396 1.76310 1.21965 1.23853 0.90631 0.72823 0.82781 1.90593 1.27512 1.47828 1.76980 1.20441 0.91745 1.04643 0.80212 1.44639 1.11823 1.72017 1.09912 1.15768 0.84576 0.78097 0.80578 1.90941 1.16396 1.58684 1.82359 1.42355 1.13747 1.68440 1.07613 1.17757 0.90281 1.00009 0.87118 1.21188 1.02024 1.02879 0.90761 1.21331 0.93063 0.98168 0.99604 1.21492 0.96938 1.00281 0.97074 1.21310 0.99941 0.99249 0.92618 1.21348 0.93615 1.01253 1.00298 1.23075 0.98530 0.96230 1.03882 1.22446 0.92588 1.01524 1.01462 0.93087 0.93839 0.92239 0.86558 0.85454 0.74568 0.73827 0.83615 0.82901 0.83568 0.84581 0.86432 0.88767 0.89860 0.91316 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.99 12.73 21.45 0.27 -50.72 16 2 C 0.02 1.23 5.43 84.65 0.46 1.69 16 3 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.50 -26.65 8.59 25.60 0.22 -26.43 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.00 -0.08 1.72 -52.93 -0.09 -0.17 16 10 C 0.13 5.75 5.34 71.98 0.38 6.14 16 11 O -0.34 -13.76 9.97 -51.39 -0.51 -14.27 16 12 C 0.46 15.41 8.03 71.24 0.57 15.98 16 13 O -0.54 -19.71 15.42 21.97 0.34 -19.37 16 14 C 0.16 4.07 6.27 85.63 0.54 4.61 16 15 N -0.72 -16.83 5.53 -482.31 -2.67 -19.50 16 16 C 0.71 17.73 8.41 179.05 1.51 19.24 16 17 O -0.60 -19.35 13.82 -3.99 -0.06 -19.41 16 18 N -0.67 -12.72 5.34 -317.17 -1.69 -14.42 16 19 C 0.14 2.91 6.29 38.15 0.24 3.15 16 20 C -0.15 -2.25 9.97 22.39 0.22 -2.03 16 21 C -0.10 -1.33 10.04 22.25 0.22 -1.11 16 22 C -0.14 -1.94 10.04 22.29 0.22 -1.72 16 23 C -0.11 -2.02 10.04 22.25 0.22 -1.80 16 24 C -0.14 -3.31 8.69 22.39 0.19 -3.12 16 25 C -0.18 -7.31 9.93 30.62 0.30 -7.01 16 26 C -0.14 -6.39 9.26 30.62 0.28 -6.11 16 27 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 28 H 0.04 2.18 8.13 -2.39 -0.02 2.16 16 29 H 0.06 2.40 8.09 -2.39 -0.02 2.38 16 30 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.42 8.63 7.46 -92.71 -0.69 7.94 16 33 H 0.42 5.13 8.84 -92.71 -0.82 4.32 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.12 3.18 6.28 -2.91 -0.02 3.17 16 39 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 40 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -67.94 367.71 2.76 -65.18 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.45 Total: 26.11 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 5.50 Total: 1.32 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -4.09 Total: -84.63 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.23 Total: -53.05 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -67.94 2.76 -65.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.913 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds