Wall clock time and date at job start Tue Mar 31 2020 12:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 115.54672 * 2 1 4 4 N 1.46502 * 109.47383 * 279.62488 * 3 2 1 5 5 C 1.34767 * 120.00118 * 175.10685 * 4 3 2 6 6 O 1.21365 * 120.00328 * 0.02562 * 5 4 3 7 7 C 1.49350 * 120.00049 * 180.02562 * 5 4 3 8 8 O 1.21382 * 120.00066 * 359.97438 * 7 5 4 9 9 N 1.34778 * 120.00471 * 180.02562 * 7 5 4 10 10 C 1.39718 * 120.00392 * 185.04112 * 9 7 5 11 11 C 1.39026 * 120.03777 * 216.32787 * 10 9 7 12 12 C 1.38150 * 120.05914 * 179.74480 * 11 10 9 13 13 C 1.38184 * 120.14066 * 0.54798 * 12 11 10 14 14 C 1.38920 * 120.08410 * 359.70399 * 13 12 11 15 15 O 1.35750 * 120.03027 * 179.97438 * 14 13 12 16 16 C 1.34833 * 116.99899 * 5.72345 * 15 14 13 17 17 H 1.08002 * 120.00186 * 5.50386 * 16 15 14 18 18 C 1.38648 * 119.99925 * 185.51318 * 16 15 14 19 19 N 1.31561 * 120.00218 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00195 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47032 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47317 * 119.99885 * 20 18 16 23 23 H 1.48498 * 109.47116 * 239.99778 * 20 18 16 24 24 C 1.38759 * 119.93851 * 0.02562 * 14 13 12 25 25 C 1.52999 * 117.52272 * 145.69878 * 2 1 3 26 26 C 1.52996 * 117.50308 * 214.33223 * 2 1 3 27 27 H 1.08999 * 109.47016 * 65.97198 * 1 2 3 28 28 H 1.09005 * 109.46483 * 185.96622 * 1 2 3 29 29 H 1.08993 * 109.47554 * 305.96626 * 1 2 3 30 30 H 1.09003 * 109.47269 * 159.62553 * 3 2 1 31 31 H 1.08994 * 109.47098 * 39.63018 * 3 2 1 32 32 H 0.97005 * 119.99781 * 355.11703 * 4 3 2 33 33 H 0.97000 * 119.99491 * 5.03016 * 9 7 5 34 34 H 1.07992 * 119.97348 * 359.97438 * 11 10 9 35 35 H 1.07994 * 119.92680 * 180.27600 * 12 11 10 36 36 H 1.08001 * 119.95148 * 179.72638 * 13 12 11 37 37 H 0.97000 * 120.00087 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.07192 * 180.02562 * 24 14 13 39 39 H 1.08997 * 117.50240 * 214.97553 * 25 2 1 40 40 H 1.08999 * 117.49741 * 359.97438 * 25 2 1 41 41 H 1.09003 * 117.49969 * 359.97397 * 26 2 1 42 42 H 1.09004 * 117.50305 * 144.99830 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 2.1920 1.9207 -1.3618 5 6 2.6358 3.1727 -1.5893 6 8 3.0340 3.8526 -0.6662 7 6 2.6376 3.7236 -2.9774 8 8 2.2398 3.0436 -3.9008 9 7 3.0818 4.9756 -3.2052 10 6 2.9860 5.5291 -4.4844 11 6 3.9909 6.3649 -4.9581 12 6 3.8991 6.9082 -6.2250 13 6 2.8037 6.6320 -7.0208 14 6 1.7937 5.8017 -6.5514 15 8 0.7178 5.5315 -7.3339 16 6 0.7459 6.0023 -8.5970 17 1 1.6342 6.4886 -8.9725 18 6 -0.3656 5.8625 -9.4139 19 7 -1.4476 5.2699 -8.9567 20 14 -0.3270 6.5154 -11.1637 21 1 0.9958 7.1346 -11.4319 22 1 -0.5525 5.3971 -12.1144 23 1 -1.3938 7.5340 -11.3356 24 6 1.8850 5.2497 -5.2816 25 6 2.2370 -1.1209 0.7646 26 6 2.2365 -1.1206 -0.7654 27 1 -0.3633 0.4184 -0.9386 28 1 -0.3632 -1.0222 0.1068 29 1 -0.3634 0.6035 0.8317 30 1 3.2157 1.2928 0.3578 31 1 1.6324 2.0495 0.6554 32 1 1.8740 1.3772 -2.0997 33 1 3.4679 5.4924 -2.4808 34 1 4.8457 6.5868 -4.3366 35 1 4.6831 7.5537 -6.5924 36 1 2.7330 7.0620 -8.0090 37 1 -2.2251 5.1717 -9.5283 38 1 1.1013 4.6036 -4.9148 39 1 3.1721 -0.8749 1.2677 40 1 1.6121 -1.8584 1.2683 41 1 1.6113 -1.8582 -1.2686 42 1 3.1714 -0.8745 -1.2689 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752127287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:54 Heat of formation + Delta-G solvation = -42.453714 kcal Electronic energy + Delta-G solvation = -25400.720551 eV Core-core repulsion = 21540.700894 eV Total energy + Delta-G solvation = -3860.019657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89752 -39.51038 -38.68485 -38.09602 -36.63219 -34.76269 -33.84202 -32.27430 -29.70621 -29.21156 -28.69333 -27.51285 -25.38520 -24.33441 -22.87346 -22.02499 -21.30147 -20.34551 -19.75440 -18.60576 -18.07028 -17.13154 -16.75234 -16.19914 -15.91194 -15.45668 -15.24391 -15.09649 -14.91280 -14.36228 -14.18061 -14.01127 -13.71610 -13.55880 -13.39887 -13.02830 -12.83030 -12.56582 -12.53613 -11.93902 -11.84042 -11.69090 -11.66322 -11.60860 -11.14012 -11.06939 -10.76313 -10.67552 -10.45129 -10.30064 -9.87717 -9.65151 -9.46376 -9.28282 -8.84608 -7.79653 -7.24616 -6.45090 -4.04084 1.25553 2.08265 2.28294 2.33164 3.12219 3.13851 3.19790 3.24096 3.26059 3.69577 3.97077 4.17006 4.29204 4.40778 4.51097 4.54127 4.56114 5.10109 5.16624 5.25264 5.26941 5.29258 5.45914 5.47556 5.53860 5.58180 5.61288 5.73308 5.78206 5.86983 5.97739 6.03785 6.13159 6.28477 6.54999 6.67701 6.93769 6.99456 7.03953 7.30312 7.40810 7.44358 7.65911 7.74973 7.99426 8.07194 9.00059 9.70002 10.72803 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.002651 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.227892 B =10558.229013 C =11929.535360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.151 4.151 3 C 0.156 3.844 4 N -0.697 5.697 5 C 0.513 3.487 6 O -0.523 6.523 7 C 0.500 3.500 8 O -0.490 6.490 9 N -0.638 5.638 10 C 0.170 3.830 11 C -0.228 4.228 12 C -0.058 4.058 13 C -0.240 4.240 14 C 0.167 3.833 15 O -0.173 6.173 16 C -0.391 4.391 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.183 4.183 25 C -0.161 4.161 26 C -0.171 4.171 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.416 0.584 33 H 0.417 0.583 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.270 0.730 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.630 -8.217 16.728 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.151 4.151 3 C 0.033 3.967 4 N -0.351 5.351 5 C 0.293 3.707 6 O -0.399 6.399 7 C 0.280 3.720 8 O -0.363 6.363 9 N -0.285 5.285 10 C 0.078 3.922 11 C -0.249 4.249 12 C -0.077 4.077 13 C -0.259 4.259 14 C 0.112 3.888 15 O -0.076 6.076 16 C -0.467 4.467 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.495 5.495 20 Si 0.767 3.233 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.205 4.205 25 C -0.198 4.198 26 C -0.208 4.208 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.253 0.747 33 H 0.255 0.745 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.144 -8.442 16.722 20.049 hybrid contribution 0.090 0.338 -0.837 0.907 sum 7.235 -8.104 15.885 19.245 Atomic orbital electron populations 1.21346 0.91141 1.02239 1.02628 1.21713 0.95637 0.90252 1.07516 1.20944 1.00730 0.92192 0.82846 1.45749 1.63671 1.14431 1.11205 1.20094 0.78800 0.82557 0.89245 1.90758 1.45855 1.58482 1.44808 1.20102 0.79903 0.82792 0.89171 1.90872 1.43524 1.57807 1.44103 1.43024 1.60014 1.14270 1.11208 1.17132 0.94435 0.96560 0.84089 1.20315 0.99408 1.07159 0.98035 1.20534 0.96715 0.97527 0.92885 1.21224 0.96768 1.05506 1.02446 1.19078 0.88009 0.91520 0.90202 1.84002 1.34359 1.66170 1.23043 1.21393 1.01229 1.39229 0.84841 0.88904 1.25313 0.94302 0.96800 1.00144 1.70059 1.03311 1.39293 1.36799 0.85633 0.78758 0.78583 0.80361 1.19051 1.20127 1.20148 1.19950 0.99087 1.07125 0.94294 1.23070 1.02162 0.99941 0.94668 1.23088 1.02604 1.00581 0.94538 0.91674 0.92090 0.91837 0.90918 0.90096 0.74723 0.74540 0.87054 0.86787 0.85262 0.92032 0.85579 0.88456 0.88273 0.88185 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.73 37.16 0.36 -0.45 16 2 C -0.15 -1.07 2.13 -154.51 -0.33 -1.40 16 3 C 0.16 1.36 5.58 -4.04 -0.02 1.33 16 4 N -0.70 -7.54 5.51 -60.76 -0.33 -7.87 16 5 C 0.51 6.91 7.89 -11.64 -0.09 6.82 16 6 O -0.52 -7.69 16.48 5.48 0.09 -7.60 16 7 C 0.50 7.97 7.60 -11.63 -0.09 7.88 16 8 O -0.49 -9.29 14.38 5.47 0.08 -9.21 16 9 N -0.64 -9.97 5.31 -10.31 -0.05 -10.03 16 10 C 0.17 3.20 6.21 -83.78 -0.52 2.68 16 11 C -0.23 -3.92 9.97 -39.32 -0.39 -4.31 16 12 C -0.06 -1.04 10.03 -39.63 -0.40 -1.44 16 13 C -0.24 -5.19 9.13 -39.35 -0.36 -5.55 16 14 C 0.17 4.13 6.64 -39.14 -0.26 3.87 16 15 O -0.17 -5.02 9.76 0.04 0.00 -5.02 16 16 C -0.39 -10.96 9.44 30.88 0.29 -10.67 16 17 H 0.09 2.40 5.29 -52.49 -0.28 2.12 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 20 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.18 -4.14 8.59 -39.19 -0.34 -4.48 16 25 C -0.16 -0.95 9.86 -26.73 -0.26 -1.21 16 26 C -0.17 -1.15 9.85 -26.73 -0.26 -1.41 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.62 7.94 -51.93 -0.41 0.20 16 31 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.42 4.37 7.88 -40.82 -0.32 4.05 16 33 H 0.42 5.38 8.30 -40.82 -0.34 5.04 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.13 2.77 5.70 -52.49 -0.30 2.47 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.13 2.98 6.65 -52.49 -0.35 2.63 16 39 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -32.89 365.32 -7.10 -39.99 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.35 Total: 10.72 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.77 Total: -7.36 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.37 Total: -42.52 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.17 Total: -21.83 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.89 -7.10 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752127287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.464 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds