Wall clock time and date at job start Tue Mar 31 2020 12:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 115.54672 * 2 1 4 4 N 1.46502 * 109.47383 * 279.62488 * 3 2 1 5 5 C 1.34767 * 120.00118 * 175.10685 * 4 3 2 6 6 O 1.21365 * 120.00328 * 0.02562 * 5 4 3 7 7 C 1.49350 * 120.00049 * 180.02562 * 5 4 3 8 8 O 1.21382 * 120.00066 * 359.97438 * 7 5 4 9 9 N 1.34778 * 120.00471 * 180.02562 * 7 5 4 10 10 C 1.39718 * 120.00392 * 185.04112 * 9 7 5 11 11 C 1.39026 * 120.03777 * 216.32787 * 10 9 7 12 12 C 1.38150 * 120.05914 * 179.74480 * 11 10 9 13 13 C 1.38184 * 120.14066 * 0.54798 * 12 11 10 14 14 C 1.38920 * 120.08410 * 359.70399 * 13 12 11 15 15 O 1.35750 * 120.03027 * 179.97438 * 14 13 12 16 16 C 1.34833 * 116.99899 * 5.72345 * 15 14 13 17 17 H 1.08002 * 120.00186 * 5.50386 * 16 15 14 18 18 C 1.38648 * 119.99925 * 185.51318 * 16 15 14 19 19 N 1.31561 * 120.00218 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00195 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47032 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47317 * 119.99885 * 20 18 16 23 23 H 1.48498 * 109.47116 * 239.99778 * 20 18 16 24 24 C 1.38759 * 119.93851 * 0.02562 * 14 13 12 25 25 C 1.52999 * 117.52272 * 145.69878 * 2 1 3 26 26 C 1.52996 * 117.50308 * 214.33223 * 2 1 3 27 27 H 1.08999 * 109.47016 * 65.97198 * 1 2 3 28 28 H 1.09005 * 109.46483 * 185.96622 * 1 2 3 29 29 H 1.08993 * 109.47554 * 305.96626 * 1 2 3 30 30 H 1.09003 * 109.47269 * 159.62553 * 3 2 1 31 31 H 1.08994 * 109.47098 * 39.63018 * 3 2 1 32 32 H 0.97005 * 119.99781 * 355.11703 * 4 3 2 33 33 H 0.97000 * 119.99491 * 5.03016 * 9 7 5 34 34 H 1.07992 * 119.97348 * 359.97438 * 11 10 9 35 35 H 1.07994 * 119.92680 * 180.27600 * 12 11 10 36 36 H 1.08001 * 119.95148 * 179.72638 * 13 12 11 37 37 H 0.97000 * 120.00087 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.07192 * 180.02562 * 24 14 13 39 39 H 1.08997 * 117.50240 * 214.97553 * 25 2 1 40 40 H 1.08999 * 117.49741 * 359.97438 * 25 2 1 41 41 H 1.09003 * 117.49969 * 359.97397 * 26 2 1 42 42 H 1.09004 * 117.50305 * 144.99830 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 2.1920 1.9207 -1.3618 5 6 2.6358 3.1727 -1.5893 6 8 3.0340 3.8526 -0.6662 7 6 2.6376 3.7236 -2.9774 8 8 2.2398 3.0436 -3.9008 9 7 3.0818 4.9756 -3.2052 10 6 2.9860 5.5291 -4.4844 11 6 3.9909 6.3649 -4.9581 12 6 3.8991 6.9082 -6.2250 13 6 2.8037 6.6320 -7.0208 14 6 1.7937 5.8017 -6.5514 15 8 0.7178 5.5315 -7.3339 16 6 0.7459 6.0023 -8.5970 17 1 1.6342 6.4886 -8.9725 18 6 -0.3656 5.8625 -9.4139 19 7 -1.4476 5.2699 -8.9567 20 14 -0.3270 6.5154 -11.1637 21 1 0.9958 7.1346 -11.4319 22 1 -0.5525 5.3971 -12.1144 23 1 -1.3938 7.5340 -11.3356 24 6 1.8850 5.2497 -5.2816 25 6 2.2370 -1.1209 0.7646 26 6 2.2365 -1.1206 -0.7654 27 1 -0.3633 0.4184 -0.9386 28 1 -0.3632 -1.0222 0.1068 29 1 -0.3634 0.6035 0.8317 30 1 3.2157 1.2928 0.3578 31 1 1.6324 2.0495 0.6554 32 1 1.8740 1.3772 -2.0997 33 1 3.4679 5.4924 -2.4808 34 1 4.8457 6.5868 -4.3366 35 1 4.6831 7.5537 -6.5924 36 1 2.7330 7.0620 -8.0090 37 1 -2.2251 5.1717 -9.5283 38 1 1.1013 4.6036 -4.9148 39 1 3.1721 -0.8749 1.2677 40 1 1.6121 -1.8584 1.2683 41 1 1.6113 -1.8582 -1.2686 42 1 3.1714 -0.8745 -1.2689 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752127287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:53 Heat of formation + Delta-G solvation = -65.782772 kcal Electronic energy + Delta-G solvation = -25401.732175 eV Core-core repulsion = 21540.700894 eV Total energy + Delta-G solvation = -3861.031281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.16851 -40.86837 -40.01496 -39.04811 -38.29050 -36.00885 -35.03932 -34.26211 -31.33705 -30.34495 -29.77427 -28.40611 -27.35350 -25.59487 -23.65685 -23.34068 -22.85900 -21.48213 -20.69407 -20.09243 -19.44052 -18.85056 -17.98158 -17.26561 -16.98959 -16.84676 -16.78000 -16.22513 -16.13329 -15.93652 -15.53969 -15.49361 -15.12013 -14.80968 -14.43011 -14.29207 -14.04717 -13.70987 -13.60098 -13.28870 -13.13813 -13.12425 -12.77531 -12.71960 -12.40401 -12.35899 -12.29829 -12.08532 -11.47152 -11.33454 -11.21665 -10.94989 -10.79007 -10.64670 -10.38719 -9.43048 -8.95823 -8.46989 -6.16123 -0.05721 0.59776 0.68167 1.13108 1.36207 1.44918 1.55249 1.99039 2.17079 2.39130 2.80747 2.86796 3.14338 3.24850 3.54138 3.56735 3.72689 3.91839 4.02220 4.08687 4.33435 4.36915 4.53464 4.58490 4.60818 4.67703 4.78322 4.86549 4.90390 4.93749 5.02344 5.03675 5.07017 5.10551 5.24894 5.26185 5.30370 5.33124 5.59559 5.69885 5.81129 6.01844 6.11281 6.21446 6.61086 6.80101 6.97106 7.77635 8.76764 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.002651 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.227892 B =10558.229013 C =11929.535360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.159 4.159 3 C 0.154 3.846 4 N -0.684 5.684 5 C 0.521 3.479 6 O -0.533 6.533 7 C 0.498 3.502 8 O -0.525 6.525 9 N -0.628 5.628 10 C 0.176 3.824 11 C -0.198 4.198 12 C -0.047 4.047 13 C -0.247 4.247 14 C 0.129 3.871 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.107 0.893 18 C -0.026 4.026 19 N -0.922 5.922 20 Si 1.022 2.978 21 H -0.247 1.247 22 H -0.270 1.270 23 H -0.268 1.268 24 C -0.205 4.205 25 C -0.146 4.146 26 C -0.177 4.177 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.417 0.583 33 H 0.434 0.566 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.127 0.873 37 H 0.272 0.728 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.687 -7.475 17.954 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.159 4.159 3 C 0.032 3.968 4 N -0.337 5.337 5 C 0.301 3.699 6 O -0.411 6.411 7 C 0.280 3.720 8 O -0.400 6.400 9 N -0.277 5.277 10 C 0.082 3.918 11 C -0.219 4.219 12 C -0.065 4.065 13 C -0.267 4.267 14 C 0.077 3.923 15 O -0.138 6.138 16 C -0.488 4.488 17 H 0.124 0.876 18 C -0.223 4.223 19 N -0.561 5.561 20 Si 0.841 3.159 21 H -0.170 1.170 22 H -0.195 1.195 23 H -0.193 1.193 24 C -0.227 4.227 25 C -0.183 4.183 26 C -0.214 4.214 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.254 0.746 33 H 0.275 0.725 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.259 -7.702 18.026 22.125 hybrid contribution -0.635 0.069 -0.910 1.112 sum 9.624 -7.633 17.116 21.068 Atomic orbital electron populations 1.21343 0.91145 1.02869 1.01982 1.21661 0.95620 0.89660 1.08962 1.21121 1.01409 0.92975 0.81250 1.45830 1.62048 1.13383 1.12389 1.19567 0.79416 0.83280 0.87683 1.90758 1.46961 1.58912 1.44439 1.20646 0.78681 0.82613 0.90018 1.90871 1.44796 1.58779 1.45537 1.42959 1.59798 1.14339 1.10565 1.17262 0.93477 0.96246 0.84778 1.20927 0.99280 1.03791 0.97869 1.21059 0.96089 0.96908 0.92435 1.21390 0.97243 1.05035 1.03016 1.19592 0.88375 0.93371 0.90926 1.83964 1.36890 1.68919 1.24045 1.21928 1.02146 1.39412 0.85292 0.87587 1.26674 0.93544 0.96890 1.05169 1.70216 1.04524 1.42278 1.39036 0.84481 0.79667 0.78024 0.73707 1.17021 1.19532 1.19347 1.19970 1.00299 1.07731 0.94671 1.23163 1.02292 0.98837 0.94020 1.23125 1.02401 1.00407 0.95441 0.93092 0.91037 0.91562 0.90102 0.90186 0.74561 0.72538 0.81997 0.81967 0.85542 0.91859 0.88215 0.87630 0.87067 0.87890 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.73 71.98 0.70 -0.82 16 2 C -0.16 -2.05 2.13 -52.18 -0.11 -2.16 16 3 C 0.15 2.49 5.58 86.38 0.48 2.97 16 4 N -0.68 -14.39 5.51 -464.51 -2.56 -16.95 16 5 C 0.52 13.59 7.89 87.24 0.69 14.28 16 6 O -0.53 -14.79 16.48 -3.29 -0.05 -14.84 16 7 C 0.50 15.77 7.60 87.24 0.66 16.43 16 8 O -0.52 -20.54 14.38 -3.35 -0.05 -20.58 16 9 N -0.63 -18.61 5.31 -304.88 -1.62 -20.23 16 10 C 0.18 6.36 6.21 38.20 0.24 6.60 16 11 C -0.20 -5.94 9.97 22.44 0.22 -5.71 16 12 C -0.05 -1.49 10.03 22.24 0.22 -1.27 16 13 C -0.25 -10.59 9.13 22.42 0.20 -10.39 16 14 C 0.13 6.65 6.64 22.56 0.15 6.80 16 15 O -0.23 -14.44 9.76 -22.76 -0.22 -14.66 16 16 C -0.41 -24.28 9.44 67.92 0.64 -23.64 16 17 H 0.11 5.64 5.29 -2.91 -0.02 5.63 16 18 C -0.03 -1.47 5.49 84.83 0.47 -1.01 16 19 N -0.92 -57.82 13.67 21.61 0.30 -57.53 16 20 Si 1.02 43.13 29.55 68.60 2.03 45.16 16 21 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 C -0.21 -9.63 8.59 22.52 0.19 -9.43 16 25 C -0.15 -1.41 9.86 30.59 0.30 -1.10 16 26 C -0.18 -2.15 9.85 30.59 0.30 -1.85 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.78 8.09 -2.38 -0.02 0.76 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.21 7.94 -2.39 -0.02 1.20 16 31 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 32 H 0.42 8.79 7.88 -92.70 -0.73 8.06 16 33 H 0.43 9.93 8.30 -92.71 -0.77 9.16 16 34 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 36 H 0.13 5.41 5.70 -2.91 -0.02 5.39 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.10 5.11 6.65 -2.91 -0.02 5.09 16 39 H 0.11 0.87 8.08 -2.39 -0.02 0.85 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -77.84 365.32 2.76 -75.08 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.42 Total: 34.87 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.36 Total: -10.31 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -3.88 Total: -94.70 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -0.32 Total: -50.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -77.84 2.76 -75.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752127287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.293 kcal (2) G-P(sol) polarization free energy of solvation -77.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds