Wall clock time and date at job start Tue Mar 31 2020 13:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34530 * 126.69162 * 2 1 4 4 O 1.21539 * 123.76527 * 359.95999 * 3 2 1 5 5 N 1.33787 * 112.45969 * 180.13000 * 3 2 1 6 6 C 1.46494 * 124.18217 * 179.86715 * 5 3 2 7 7 C 1.50701 * 109.47135 * 269.70156 * 6 5 3 8 8 C 1.38302 * 119.93101 * 89.99303 * 7 6 5 9 9 C 1.38105 * 120.06695 * 180.02562 * 8 7 6 10 10 C 1.38871 * 119.93200 * 359.97438 * 9 8 7 11 11 O 1.35753 * 120.07178 * 180.02562 * 10 9 8 12 12 C 1.34831 * 116.99766 * 354.46580 * 11 10 9 13 13 H 1.08005 * 119.99910 * 5.05947 * 12 11 10 14 14 C 1.38653 * 120.00325 * 185.05796 * 12 11 10 15 15 N 1.31555 * 119.99726 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00359 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47164 * 89.99653 * 16 14 12 18 18 H 1.48499 * 109.47014 * 210.00195 * 16 14 12 19 19 H 1.48506 * 109.46904 * 329.99621 * 16 14 12 20 20 C 1.38880 * 119.86456 * 0.27348 * 10 9 8 21 21 C 1.38102 * 119.92802 * 359.44993 * 20 10 9 22 22 C 1.34776 * 111.64307 * 359.59830 * 5 3 2 23 23 O 1.21232 * 127.15854 * 180.26431 * 22 5 3 24 24 C 1.47312 * 126.68787 * 179.70314 * 2 1 3 25 25 C 1.52997 * 110.60456 * 61.50609 * 24 2 1 26 26 C 1.53001 * 110.59929 * 298.55463 * 24 2 1 27 27 H 1.09004 * 109.46648 * 270.30399 * 1 2 3 28 28 H 1.08992 * 109.47253 * 30.30007 * 1 2 3 29 29 H 1.09000 * 109.47060 * 150.30768 * 1 2 3 30 30 H 1.08992 * 109.47463 * 149.69726 * 6 5 3 31 31 H 1.09000 * 109.46792 * 29.69608 * 6 5 3 32 32 H 1.08001 * 119.96675 * 0.02562 * 8 7 6 33 33 H 1.07996 * 120.03107 * 179.97438 * 9 8 7 34 34 H 0.97003 * 120.00171 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.03810 * 179.72208 * 20 10 9 36 36 H 1.07996 * 119.96803 * 180.27492 * 21 20 10 37 37 H 1.08991 * 109.47246 * 175.62785 * 25 24 2 38 38 H 1.09009 * 109.46468 * 295.62485 * 25 24 2 39 39 H 1.08995 * 109.47312 * 55.62209 * 25 24 2 40 40 H 1.09006 * 109.46850 * 304.37693 * 26 24 2 41 41 H 1.09002 * 109.47157 * 64.37111 * 26 24 2 42 42 H 1.08997 * 109.47403 * 184.37997 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2689 1.0787 0.0000 4 8 1.8623 2.2241 -0.0007 5 7 3.5657 0.7498 -0.0028 6 6 4.6614 1.7222 -0.0063 7 6 5.0386 2.0488 -1.4283 8 6 4.4157 3.0947 -2.0846 9 6 4.7589 3.3962 -3.3880 10 6 5.7309 2.6481 -4.0393 11 8 6.0708 2.9423 -5.3202 12 6 5.3486 3.8965 -5.9414 13 1 4.5959 4.4455 -5.3950 14 6 5.5722 4.1731 -7.2815 15 7 6.4894 3.5047 -7.9469 16 14 4.5722 5.4956 -8.1419 17 1 5.2649 6.8027 -8.0126 18 1 4.4289 5.1512 -9.5793 19 1 3.2276 5.5840 -7.5177 20 6 6.3509 1.5952 -3.3793 21 6 6.0074 1.3023 -2.0741 22 6 3.7395 -0.5866 0.0038 23 8 4.7921 -1.1881 0.0078 24 6 2.3452 -1.1813 0.0061 25 6 2.1190 -2.0277 -1.2481 26 6 2.1178 -2.0154 1.2684 27 1 -0.3633 0.0055 1.0277 28 1 -0.3633 0.8872 -0.5184 29 1 -0.3633 -0.8927 -0.5090 30 1 5.5233 1.3003 0.5105 31 1 4.3418 2.6315 0.5028 32 1 3.6602 3.6764 -1.5774 33 1 4.2718 4.2128 -3.9001 34 1 6.6457 3.6979 -8.8846 35 1 7.1040 1.0088 -3.8846 36 1 6.4924 0.4865 -1.5587 37 1 2.8314 -2.8524 -1.2632 38 1 1.1038 -2.4247 -1.2403 39 1 2.2604 -1.4091 -2.1343 40 1 2.2585 -1.3881 2.1487 41 1 1.1026 -2.4123 1.2637 42 1 2.8303 -2.8400 1.2923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761229111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:51 Heat of formation + Delta-G solvation = -37.227769 kcal Electronic energy + Delta-G solvation = -26859.071121 eV Core-core repulsion = 22999.278078 eV Total energy + Delta-G solvation = -3859.793043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54825 -39.07007 -38.62250 -37.22228 -36.47714 -35.22677 -32.39560 -32.32830 -30.76275 -30.16848 -27.88168 -27.71438 -25.83287 -24.92845 -24.03371 -22.01877 -21.14771 -20.94172 -20.11813 -18.00261 -17.39607 -17.15133 -16.77407 -16.23734 -15.90384 -15.14097 -14.90286 -14.66139 -14.60000 -14.51170 -14.35967 -13.77421 -13.62716 -13.39056 -13.10312 -13.04966 -12.87860 -12.77645 -12.64588 -12.53640 -12.19265 -11.97250 -11.86111 -11.57711 -11.40364 -11.18447 -10.95817 -10.66239 -10.60792 -10.44759 -10.08899 -9.62938 -9.35457 -9.13611 -8.86914 -8.19440 -7.27219 -6.48722 -4.07280 1.61745 1.84435 2.22465 2.39565 2.91412 3.05811 3.12032 3.12734 3.17568 3.80830 3.94480 4.24503 4.46442 4.54742 4.72345 5.05643 5.08658 5.11670 5.14980 5.17811 5.23164 5.25482 5.32347 5.35084 5.41609 5.50770 5.59036 5.72818 5.78069 5.79726 5.84897 5.91798 6.20845 6.30099 6.42984 6.67746 6.88596 7.02356 7.11776 7.22701 7.36549 7.37063 7.41581 7.79155 7.96625 8.09801 8.96778 9.65610 10.68943 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.003278 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.390058 B = 8538.701367 C = 8942.255139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.625 5.625 3 C 0.701 3.299 4 O -0.540 6.540 5 N -0.568 5.568 6 C 0.176 3.824 7 C -0.223 4.223 8 C -0.042 4.042 9 C -0.239 4.239 10 C 0.163 3.837 11 O -0.174 6.174 12 C -0.393 4.393 13 H 0.093 0.907 14 C 0.040 3.960 15 N -0.861 5.861 16 Si 0.942 3.058 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.197 4.197 21 C -0.051 4.051 22 C 0.531 3.469 23 O -0.466 6.466 24 C 0.115 3.885 25 C -0.146 4.146 26 C -0.142 4.142 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.271 0.729 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.200 -10.317 17.059 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.365 5.365 3 C 0.403 3.597 4 O -0.413 6.413 5 N -0.312 5.312 6 C 0.057 3.943 7 C -0.225 4.225 8 C -0.061 4.061 9 C -0.258 4.258 10 C 0.108 3.892 11 O -0.077 6.077 12 C -0.469 4.469 13 H 0.111 0.889 14 C -0.165 4.165 15 N -0.495 5.495 16 Si 0.766 3.234 17 H -0.198 1.198 18 H -0.202 1.202 19 H -0.191 1.191 20 C -0.217 4.217 21 C -0.069 4.069 22 C 0.317 3.683 23 O -0.335 6.335 24 C 0.026 3.974 25 C -0.204 4.204 26 C -0.200 4.200 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.651 -10.038 16.659 22.175 hybrid contribution -0.558 0.740 -0.545 1.075 sum -11.209 -9.298 16.114 21.720 Atomic orbital electron populations 1.21433 0.74748 1.03676 1.02035 1.47679 1.06369 1.04950 1.77526 1.15917 0.80933 0.85283 0.77544 1.90957 1.76935 1.18673 1.54743 1.46751 1.08070 1.09012 1.67409 1.20391 0.86953 0.91219 0.95717 1.19311 1.04490 1.02477 0.96216 1.20716 0.96473 0.95175 0.93764 1.21151 1.03856 1.04777 0.96008 1.19443 0.91711 0.92045 0.85997 1.83976 1.51969 1.51921 1.19789 1.21368 1.18410 1.13636 0.93459 0.88950 1.25310 0.97175 0.98563 0.95410 1.70041 1.30409 1.39095 1.09955 0.85701 0.79460 0.79626 0.78616 1.19782 1.20191 1.19125 1.20193 1.05854 1.00260 0.95365 1.20577 0.95614 0.97262 0.93488 1.20711 0.90826 0.82377 0.74392 1.90767 1.30609 1.66261 1.45875 1.21528 0.87776 0.88374 0.99678 1.21962 1.03549 0.99885 0.94997 1.21944 1.03713 0.99827 0.94548 0.92309 0.89988 0.90501 0.88870 0.88712 0.86960 0.85453 0.91934 0.86393 0.86757 0.89806 0.90543 0.91090 0.91619 0.90507 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.90 10.86 59.85 0.65 1.55 16 2 N -0.63 -6.77 2.86 -172.90 -0.49 -7.26 16 3 C 0.70 10.22 8.31 -88.02 -0.73 9.49 16 4 O -0.54 -9.41 17.15 5.33 0.09 -9.32 16 5 N -0.57 -8.18 2.59 -122.03 -0.32 -8.49 16 6 C 0.18 2.59 5.82 -5.20 -0.03 2.56 16 7 C -0.22 -4.02 5.47 -104.57 -0.57 -4.59 16 8 C -0.04 -0.84 9.69 -39.61 -0.38 -1.22 16 9 C -0.24 -5.39 9.17 -39.40 -0.36 -5.75 16 10 C 0.16 4.02 6.65 -39.11 -0.26 3.76 16 11 O -0.17 -5.02 9.76 0.04 0.00 -5.02 16 12 C -0.39 -11.09 9.49 30.89 0.29 -10.79 16 13 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 14 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 15 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 16 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 C -0.20 -4.30 9.99 -39.39 -0.39 -4.70 16 21 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 22 C 0.53 7.07 6.98 -10.55 -0.07 7.00 16 23 O -0.47 -7.07 17.76 5.60 0.10 -6.97 16 24 C 0.12 1.13 1.14 -132.09 -0.15 0.98 16 25 C -0.15 -1.25 8.75 37.16 0.33 -0.92 16 26 C -0.14 -0.97 8.81 37.16 0.33 -0.64 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.69 8.03 -51.93 -0.42 0.28 16 29 H 0.08 0.37 7.48 -51.93 -0.39 -0.01 16 30 H 0.09 1.22 7.95 -51.93 -0.41 0.81 16 31 H 0.09 1.31 7.80 -51.93 -0.40 0.91 16 32 H 0.11 2.08 8.06 -52.49 -0.42 1.65 16 33 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 36 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.46 7.60 -51.92 -0.39 0.06 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -33.94 362.02 -6.80 -40.74 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.53 Total: 3.38 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.84 Total: -3.59 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.05 Total: -40.30 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.19 Total: -21.31 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.94 -6.80 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761229111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.513 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds