Wall clock time and date at job start Tue Mar 31 2020 13:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34530 * 126.69162 * 2 1 4 4 O 1.21539 * 123.76527 * 359.95999 * 3 2 1 5 5 N 1.33787 * 112.45969 * 180.13000 * 3 2 1 6 6 C 1.46494 * 124.18217 * 179.86715 * 5 3 2 7 7 C 1.50701 * 109.47135 * 269.70156 * 6 5 3 8 8 C 1.38302 * 119.93101 * 89.99303 * 7 6 5 9 9 C 1.38105 * 120.06695 * 180.02562 * 8 7 6 10 10 C 1.38871 * 119.93200 * 359.97438 * 9 8 7 11 11 O 1.35753 * 120.07178 * 180.02562 * 10 9 8 12 12 C 1.34831 * 116.99766 * 354.46580 * 11 10 9 13 13 H 1.08005 * 119.99910 * 5.05947 * 12 11 10 14 14 C 1.38653 * 120.00325 * 185.05796 * 12 11 10 15 15 N 1.31555 * 119.99726 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00359 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47164 * 89.99653 * 16 14 12 18 18 H 1.48499 * 109.47014 * 210.00195 * 16 14 12 19 19 H 1.48506 * 109.46904 * 329.99621 * 16 14 12 20 20 C 1.38880 * 119.86456 * 0.27348 * 10 9 8 21 21 C 1.38102 * 119.92802 * 359.44993 * 20 10 9 22 22 C 1.34776 * 111.64307 * 359.59830 * 5 3 2 23 23 O 1.21232 * 127.15854 * 180.26431 * 22 5 3 24 24 C 1.47312 * 126.68787 * 179.70314 * 2 1 3 25 25 C 1.52997 * 110.60456 * 61.50609 * 24 2 1 26 26 C 1.53001 * 110.59929 * 298.55463 * 24 2 1 27 27 H 1.09004 * 109.46648 * 270.30399 * 1 2 3 28 28 H 1.08992 * 109.47253 * 30.30007 * 1 2 3 29 29 H 1.09000 * 109.47060 * 150.30768 * 1 2 3 30 30 H 1.08992 * 109.47463 * 149.69726 * 6 5 3 31 31 H 1.09000 * 109.46792 * 29.69608 * 6 5 3 32 32 H 1.08001 * 119.96675 * 0.02562 * 8 7 6 33 33 H 1.07996 * 120.03107 * 179.97438 * 9 8 7 34 34 H 0.97003 * 120.00171 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.03810 * 179.72208 * 20 10 9 36 36 H 1.07996 * 119.96803 * 180.27492 * 21 20 10 37 37 H 1.08991 * 109.47246 * 175.62785 * 25 24 2 38 38 H 1.09009 * 109.46468 * 295.62485 * 25 24 2 39 39 H 1.08995 * 109.47312 * 55.62209 * 25 24 2 40 40 H 1.09006 * 109.46850 * 304.37693 * 26 24 2 41 41 H 1.09002 * 109.47157 * 64.37111 * 26 24 2 42 42 H 1.08997 * 109.47403 * 184.37997 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2689 1.0787 0.0000 4 8 1.8623 2.2241 -0.0007 5 7 3.5657 0.7498 -0.0028 6 6 4.6614 1.7222 -0.0063 7 6 5.0386 2.0488 -1.4283 8 6 4.4157 3.0947 -2.0846 9 6 4.7589 3.3962 -3.3880 10 6 5.7309 2.6481 -4.0393 11 8 6.0708 2.9423 -5.3202 12 6 5.3486 3.8965 -5.9414 13 1 4.5959 4.4455 -5.3950 14 6 5.5722 4.1731 -7.2815 15 7 6.4894 3.5047 -7.9469 16 14 4.5722 5.4956 -8.1419 17 1 5.2649 6.8027 -8.0126 18 1 4.4289 5.1512 -9.5793 19 1 3.2276 5.5840 -7.5177 20 6 6.3509 1.5952 -3.3793 21 6 6.0074 1.3023 -2.0741 22 6 3.7395 -0.5866 0.0038 23 8 4.7921 -1.1881 0.0078 24 6 2.3452 -1.1813 0.0061 25 6 2.1190 -2.0277 -1.2481 26 6 2.1178 -2.0154 1.2684 27 1 -0.3633 0.0055 1.0277 28 1 -0.3633 0.8872 -0.5184 29 1 -0.3633 -0.8927 -0.5090 30 1 5.5233 1.3003 0.5105 31 1 4.3418 2.6315 0.5028 32 1 3.6602 3.6764 -1.5774 33 1 4.2718 4.2128 -3.9001 34 1 6.6457 3.6979 -8.8846 35 1 7.1040 1.0088 -3.8846 36 1 6.4924 0.4865 -1.5587 37 1 2.8314 -2.8524 -1.2632 38 1 1.1038 -2.4247 -1.2403 39 1 2.2604 -1.4091 -2.1343 40 1 2.2585 -1.3881 2.1487 41 1 1.1026 -2.4123 1.2637 42 1 2.8303 -2.8400 1.2923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761229111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:50 Heat of formation + Delta-G solvation = -58.651922 kcal Electronic energy + Delta-G solvation = -26860.000142 eV Core-core repulsion = 22999.278078 eV Total energy + Delta-G solvation = -3860.722064 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.56668 -40.87162 -39.72505 -38.72136 -37.71042 -36.44869 -34.38236 -33.08889 -32.22437 -31.88559 -28.87027 -28.47115 -27.53176 -26.34689 -25.10928 -23.72838 -22.59511 -21.89589 -21.32888 -19.91369 -18.97629 -18.38899 -17.99442 -17.29267 -16.92402 -16.46065 -16.39529 -16.12689 -16.02272 -15.61319 -15.49764 -15.45874 -15.18164 -14.69214 -14.45452 -14.27087 -13.80506 -13.71600 -13.67045 -13.48154 -13.12341 -13.10224 -13.10033 -12.87420 -12.78475 -12.57662 -12.51770 -12.38537 -12.15452 -11.80388 -11.26677 -11.12846 -10.88404 -10.84276 -9.97608 -9.90113 -9.09600 -8.52381 -6.21283 0.38042 0.49167 0.58719 1.21939 1.32752 1.42487 1.50388 1.93377 1.99825 2.14197 2.74600 2.90721 3.09421 3.40940 3.50257 3.77698 3.83263 3.87660 4.03048 4.07843 4.24878 4.35891 4.51130 4.54864 4.60858 4.64697 4.65023 4.66976 4.71214 4.74796 4.88943 4.94792 5.01277 5.08268 5.10261 5.17582 5.18544 5.44537 5.45728 5.61281 5.65686 5.96265 6.07236 6.10752 6.33946 6.91725 7.02737 7.68938 8.70315 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.003278 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.390058 B = 8538.701367 C = 8942.255139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.615 5.615 3 C 0.690 3.310 4 O -0.576 6.576 5 N -0.575 5.575 6 C 0.175 3.825 7 C -0.196 4.196 8 C -0.042 4.042 9 C -0.245 4.245 10 C 0.128 3.872 11 O -0.225 6.225 12 C -0.418 4.418 13 H 0.100 0.900 14 C -0.019 4.019 15 N -0.917 5.917 16 Si 1.019 2.981 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.255 1.255 20 C -0.204 4.204 21 C -0.042 4.042 22 C 0.522 3.478 23 O -0.487 6.487 24 C 0.120 3.880 25 C -0.144 4.144 26 C -0.136 4.136 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.275 0.725 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 -11.683 19.512 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.354 5.354 3 C 0.393 3.607 4 O -0.453 6.453 5 N -0.319 5.319 6 C 0.056 3.944 7 C -0.198 4.198 8 C -0.061 4.061 9 C -0.264 4.264 10 C 0.076 3.924 11 O -0.131 6.131 12 C -0.494 4.494 13 H 0.118 0.882 14 C -0.217 4.217 15 N -0.554 5.554 16 Si 0.837 3.163 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.179 1.179 20 C -0.224 4.224 21 C -0.061 4.061 22 C 0.310 3.690 23 O -0.358 6.358 24 C 0.032 3.968 25 C -0.202 4.202 26 C -0.194 4.194 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.160 0.840 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.063 -11.461 19.176 25.878 hybrid contribution 0.137 0.983 -0.960 1.381 sum -12.926 -10.478 18.216 24.671 Atomic orbital electron populations 1.21768 0.72542 1.04599 1.03721 1.47913 1.07473 1.04129 1.75867 1.16160 0.81222 0.85674 0.77656 1.90930 1.77425 1.20225 1.56707 1.46710 1.08060 1.09499 1.67662 1.20416 0.88303 0.92531 0.93200 1.19758 1.02114 1.00241 0.97649 1.20897 0.96750 0.95790 0.92659 1.21214 1.03523 1.04497 0.97157 1.19911 0.93351 0.93675 0.85436 1.83946 1.53905 1.53514 1.21736 1.21831 1.19051 1.14200 0.94313 0.88243 1.26597 0.98295 1.01052 0.95751 1.70176 1.32928 1.41768 1.10528 0.84593 0.77991 0.76322 0.77348 1.18620 1.19245 1.17877 1.20429 1.05744 0.99639 0.96551 1.20848 0.95354 0.97627 0.92224 1.21391 0.92211 0.81945 0.73453 1.90754 1.31808 1.66447 1.46812 1.21727 0.85033 0.88115 1.01964 1.22007 1.05902 0.99286 0.92958 1.21980 1.05801 0.99281 0.92325 0.90203 0.91447 0.87271 0.86694 0.87576 0.85390 0.86257 0.91627 0.86401 0.84035 0.89169 0.87138 0.93726 0.91950 0.87463 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.28 10.86 127.77 1.39 2.67 16 2 N -0.62 -11.54 2.86 -819.37 -2.34 -13.88 16 3 C 0.69 18.86 8.31 179.44 1.49 20.35 16 4 O -0.58 -19.42 17.15 -3.84 -0.07 -19.49 16 5 N -0.58 -15.36 2.59 -777.23 -2.01 -17.37 16 6 C 0.18 4.75 5.82 85.63 0.50 5.25 16 7 C -0.20 -6.77 5.47 -19.83 -0.11 -6.88 16 8 C -0.04 -1.64 9.69 22.25 0.22 -1.43 16 9 C -0.24 -11.36 9.17 22.39 0.21 -11.16 16 10 C 0.13 6.59 6.65 22.58 0.15 6.74 16 11 O -0.23 -13.83 9.76 -22.78 -0.22 -14.05 16 12 C -0.42 -24.85 9.49 67.92 0.64 -24.20 16 13 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 14 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 15 N -0.92 -56.55 13.67 21.61 0.30 -56.26 16 16 Si 1.02 43.39 29.55 68.60 2.03 45.42 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 C -0.20 -9.11 9.99 22.39 0.22 -8.89 16 21 C -0.04 -1.54 9.69 22.25 0.22 -1.32 16 22 C 0.52 12.67 6.98 87.94 0.61 13.29 16 23 O -0.49 -13.70 17.76 -2.88 -0.05 -13.76 16 24 C 0.12 1.96 1.14 2.98 0.00 1.96 16 25 C -0.14 -1.99 8.75 71.98 0.63 -1.36 16 26 C -0.14 -1.27 8.81 71.98 0.63 -0.64 16 27 H 0.08 0.61 8.14 -2.38 -0.02 0.60 16 28 H 0.07 1.00 8.03 -2.39 -0.02 0.98 16 29 H 0.11 0.54 7.48 -2.39 -0.02 0.52 16 30 H 0.11 2.66 7.95 -2.39 -0.02 2.64 16 31 H 0.11 2.69 7.80 -2.39 -0.02 2.67 16 32 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 33 H 0.12 5.65 5.64 -2.91 -0.02 5.63 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 36 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 0.78 7.60 -2.38 -0.02 0.76 16 39 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -79.20 362.02 5.94 -73.26 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 1.04 Total: 22.37 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 7.27 Total: -6.23 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -4.06 Total: -87.51 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -0.34 Total: -47.30 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -79.20 5.94 -73.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761229111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.606 kcal (2) G-P(sol) polarization free energy of solvation -79.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds