Wall clock time and date at job start Tue Mar 31 2020 12:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48504 * 109.46956 * 269.99556 * 3 2 1 5 5 H 1.48494 * 109.47327 * 29.99830 * 3 2 1 6 6 H 1.48501 * 109.47241 * 149.99918 * 3 2 1 7 7 C 1.37874 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 H 1.09002 * 110.85339 * 297.38681 * 14 12 11 16 16 C 1.54630 * 110.96893 * 61.17298 * 14 12 11 17 17 C 1.51276 * 104.19491 * 142.92049 * 16 14 12 18 18 O 1.21289 * 124.94512 * 163.78463 * 17 16 14 19 19 N 1.34417 * 110.11627 * 343.74792 * 17 16 14 20 20 C 1.46511 * 124.34813 * 179.57464 * 19 17 16 21 21 C 1.50696 * 109.47067 * 89.97531 * 20 19 17 22 22 C 1.38225 * 119.61973 * 94.99953 * 21 20 19 23 23 C 1.38627 * 119.16048 * 179.97438 * 22 21 20 24 24 C 1.38675 * 118.42212 * 0.02562 * 23 22 21 25 25 C 1.38183 * 119.16355 * 359.97438 * 24 23 22 26 26 N 1.31853 * 119.61255 * 274.72213 * 21 20 19 27 27 C 1.46753 * 111.30188 * 359.59352 * 19 17 16 28 28 H 0.97002 * 119.99857 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 30 30 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 31 31 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 32 32 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 33 33 H 1.09005 * 110.48487 * 261.59839 * 16 14 12 34 34 H 1.08992 * 110.48897 * 24.10730 * 16 14 12 35 35 H 1.09000 * 109.46850 * 209.97401 * 20 19 17 36 36 H 1.09000 * 109.47097 * 329.97140 * 20 19 17 37 37 H 1.07996 * 120.42183 * 359.97438 * 22 21 20 38 38 H 1.07998 * 120.78891 * 180.02562 * 23 22 21 39 39 H 1.07994 * 120.41921 * 179.97438 * 24 23 22 40 40 H 1.07993 * 119.62048 * 179.97438 * 25 24 23 41 41 H 1.09003 * 110.24576 * 258.01617 * 27 19 17 42 42 H 1.08998 * 110.24883 * 136.01966 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0010 11 8 5.4734 -2.6366 0.0022 12 6 6.0828 -3.8326 0.0017 13 8 5.4247 -4.8460 0.0008 14 6 7.5877 -3.9116 0.0091 15 1 8.0043 -3.4613 -0.8920 16 6 8.1703 -3.2491 1.2790 17 6 9.3497 -4.1229 1.6453 18 8 10.2397 -3.8055 2.4058 19 7 9.2674 -5.3024 1.0060 20 6 10.2529 -6.3796 1.1287 21 6 9.8629 -7.2903 2.2642 22 6 9.1311 -8.4334 2.0027 23 6 8.7780 -9.2647 3.0544 24 6 9.1753 -8.9132 4.3357 25 6 9.9054 -7.7546 4.5203 26 7 10.2284 -6.9902 3.4950 27 6 8.0640 -5.3724 0.1691 28 1 -0.4850 0.8401 0.0004 29 1 3.8744 -0.6801 0.8911 30 1 3.8751 -0.6804 -0.8888 31 1 3.6584 -3.1503 -0.8892 32 1 3.6577 -3.1506 0.8908 33 1 8.5009 -2.2334 1.0619 34 1 7.4319 -3.2458 2.0806 35 1 10.2852 -6.9498 0.2003 36 1 11.2357 -5.9521 1.3268 37 1 8.8383 -8.6760 0.9919 38 1 8.2070 -10.1646 2.8801 39 1 8.9175 -9.5371 5.1786 40 1 10.2183 -7.4736 5.5149 41 1 7.2956 -5.9677 0.6623 42 1 8.3057 -5.7991 -0.8043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766932065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:14 Heat of formation + Delta-G solvation = -82.803769 kcal Electronic energy + Delta-G solvation = -25608.476197 eV Core-core repulsion = 21746.706830 eV Total energy + Delta-G solvation = -3861.769366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20935 -40.40482 -39.63385 -36.82573 -36.12870 -34.22452 -33.35367 -32.73126 -31.42403 -30.71480 -28.03609 -27.33187 -25.50935 -23.95554 -23.52866 -22.50996 -20.82273 -20.47577 -19.70475 -17.96384 -17.50962 -17.08157 -16.85824 -16.67252 -16.32235 -16.10790 -15.72784 -15.54430 -15.03573 -14.26483 -14.24020 -14.09514 -13.97802 -13.63249 -13.47122 -13.31213 -13.00835 -12.99268 -12.51684 -12.40470 -12.12113 -11.86995 -11.67894 -11.53511 -11.32171 -10.76583 -10.72023 -10.25512 -10.17394 -10.01547 -9.92114 -9.79982 -9.77703 -9.40870 -9.39842 -9.03382 -8.66329 -6.16883 -4.18641 0.67103 0.94319 2.24689 2.39635 2.52918 2.93961 3.25320 3.33290 3.37109 3.56111 3.88023 3.93676 4.10056 4.32472 4.35168 4.51190 4.55632 4.59627 4.68276 4.76346 4.92755 5.03582 5.07035 5.16453 5.16769 5.29059 5.31913 5.37492 5.54167 5.58862 5.73550 5.81067 5.85735 5.88124 6.14667 6.32199 6.36777 6.65021 6.79066 7.09825 7.15607 7.57192 7.69150 7.91304 7.95786 8.34822 8.84269 9.42470 10.95590 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.002444 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.971589 B =11454.673398 C =11876.754654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.082 3.918 11 O -0.355 6.355 12 C 0.469 3.531 13 O -0.508 6.508 14 C -0.097 4.097 15 H 0.131 0.869 16 C -0.142 4.142 17 C 0.522 3.478 18 O -0.509 6.509 19 N -0.617 5.617 20 C 0.179 3.821 21 C 0.102 3.898 22 C -0.158 4.158 23 C -0.077 4.077 24 C -0.171 4.171 25 C 0.099 3.901 26 N -0.461 5.461 27 C 0.115 3.885 28 H 0.266 0.734 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.090 0.910 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.151 -17.427 2.133 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.271 6.271 12 C 0.311 3.689 13 O -0.397 6.397 14 C -0.117 4.117 15 H 0.148 0.852 16 C -0.182 4.182 17 C 0.310 3.690 18 O -0.383 6.383 19 N -0.352 5.352 20 C 0.057 3.943 21 C -0.037 4.037 22 C -0.178 4.178 23 C -0.103 4.103 24 C -0.191 4.191 25 C -0.059 4.059 26 N -0.170 5.170 27 C -0.008 4.008 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.173 0.827 41 H 0.108 0.892 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 22.769 -16.688 2.689 28.358 hybrid contribution -0.588 -0.141 -0.132 0.619 sum 22.181 -16.829 2.557 27.960 Atomic orbital electron populations 1.69892 1.06305 1.27276 1.49934 1.24936 0.94772 0.99218 0.94064 0.86749 0.80454 0.83241 0.78759 1.20037 1.21151 1.18702 1.20822 0.88222 0.95044 1.52611 0.90664 1.19632 0.97044 0.90036 0.97985 1.23455 0.71828 1.01803 1.01929 1.86488 1.26587 1.31580 1.82402 1.22857 0.90595 0.82484 0.73000 1.90667 1.66958 1.36592 1.45480 1.21852 0.90138 0.97744 1.01919 0.85157 1.22332 0.97313 1.01033 0.97568 1.20777 0.86663 0.82160 0.79430 1.90766 1.37380 1.75582 1.34606 1.48228 1.24439 1.15433 1.47148 1.20154 0.92611 0.86791 0.94758 1.21651 0.95113 0.93702 0.93247 1.22010 0.99421 0.95735 1.00666 1.21613 0.96938 0.99128 0.92613 1.22218 0.99869 0.98832 0.98154 1.22833 0.94302 0.90693 0.98029 1.67581 1.19527 1.30723 0.99170 1.22028 0.87139 0.95343 0.96258 0.92382 0.95302 0.95737 0.91498 0.91566 0.86315 0.87083 0.88383 0.87985 0.84658 0.84659 0.84707 0.82683 0.89213 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.53 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.01 -0.22 4.42 -27.89 -0.12 -0.35 16 10 C 0.08 1.65 5.40 37.15 0.20 1.85 16 11 O -0.35 -6.05 10.20 -39.26 -0.40 -6.45 16 12 C 0.47 6.77 7.18 36.00 0.26 7.02 16 13 O -0.51 -8.55 15.32 -18.76 -0.29 -8.84 16 14 C -0.10 -0.96 3.66 -90.14 -0.33 -1.29 16 15 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.14 -1.52 6.40 -26.74 -0.17 -1.69 16 17 C 0.52 6.50 8.02 -10.86 -0.09 6.41 16 18 O -0.51 -8.23 17.60 5.55 0.10 -8.13 16 19 N -0.62 -6.09 2.92 -173.79 -0.51 -6.60 16 20 C 0.18 1.52 6.24 -5.19 -0.03 1.48 16 21 C 0.10 1.01 6.36 -82.59 -0.53 0.48 16 22 C -0.16 -1.24 9.72 -39.44 -0.38 -1.62 16 23 C -0.08 -0.55 10.18 -39.28 -0.40 -0.95 16 24 C -0.17 -1.27 10.11 -39.44 -0.40 -1.67 16 25 C 0.10 0.93 11.18 -17.54 -0.20 0.73 16 26 N -0.46 -5.47 10.27 -9.47 -0.10 -5.57 16 27 C 0.12 1.00 6.66 -3.13 -0.02 0.98 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 30 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 31 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 32 H 0.07 1.35 8.13 -51.93 -0.42 0.92 16 33 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.11 1.28 7.89 -51.93 -0.41 0.87 16 35 H 0.10 0.48 8.04 -51.93 -0.42 0.06 16 36 H 0.10 0.97 7.93 -51.93 -0.41 0.56 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.09 0.93 7.06 -51.93 -0.37 0.56 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -35.49 364.07 -8.01 -43.50 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.76 Total: -1.93 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.64 Total: -1.66 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.17 Total: -38.36 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.59 Total: -23.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.49 -8.01 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766932065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.305 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds