Wall clock time and date at job start Tue Mar 31 2020 12:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48504 * 109.46956 * 269.99556 * 3 2 1 5 5 H 1.48494 * 109.47327 * 29.99830 * 3 2 1 6 6 H 1.48501 * 109.47241 * 149.99918 * 3 2 1 7 7 C 1.37874 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 H 1.09002 * 110.85339 * 297.38681 * 14 12 11 16 16 C 1.54630 * 110.96893 * 61.17298 * 14 12 11 17 17 C 1.51276 * 104.19491 * 142.92049 * 16 14 12 18 18 O 1.21289 * 124.94512 * 163.78463 * 17 16 14 19 19 N 1.34417 * 110.11627 * 343.74792 * 17 16 14 20 20 C 1.46511 * 124.34813 * 179.57464 * 19 17 16 21 21 C 1.50696 * 109.47067 * 89.97531 * 20 19 17 22 22 C 1.38225 * 119.61973 * 94.99953 * 21 20 19 23 23 C 1.38627 * 119.16048 * 179.97438 * 22 21 20 24 24 C 1.38675 * 118.42212 * 0.02562 * 23 22 21 25 25 C 1.38183 * 119.16355 * 359.97438 * 24 23 22 26 26 N 1.31853 * 119.61255 * 274.72213 * 21 20 19 27 27 C 1.46753 * 111.30188 * 359.59352 * 19 17 16 28 28 H 0.97002 * 119.99857 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 30 30 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 31 31 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 32 32 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 33 33 H 1.09005 * 110.48487 * 261.59839 * 16 14 12 34 34 H 1.08992 * 110.48897 * 24.10730 * 16 14 12 35 35 H 1.09000 * 109.46850 * 209.97401 * 20 19 17 36 36 H 1.09000 * 109.47097 * 329.97140 * 20 19 17 37 37 H 1.07996 * 120.42183 * 359.97438 * 22 21 20 38 38 H 1.07998 * 120.78891 * 180.02562 * 23 22 21 39 39 H 1.07994 * 120.41921 * 179.97438 * 24 23 22 40 40 H 1.07993 * 119.62048 * 179.97438 * 25 24 23 41 41 H 1.09003 * 110.24576 * 258.01617 * 27 19 17 42 42 H 1.08998 * 110.24883 * 136.01966 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0010 11 8 5.4734 -2.6366 0.0022 12 6 6.0828 -3.8326 0.0017 13 8 5.4247 -4.8460 0.0008 14 6 7.5877 -3.9116 0.0091 15 1 8.0043 -3.4613 -0.8920 16 6 8.1703 -3.2491 1.2790 17 6 9.3497 -4.1229 1.6453 18 8 10.2397 -3.8055 2.4058 19 7 9.2674 -5.3024 1.0060 20 6 10.2529 -6.3796 1.1287 21 6 9.8629 -7.2903 2.2642 22 6 9.1311 -8.4334 2.0027 23 6 8.7780 -9.2647 3.0544 24 6 9.1753 -8.9132 4.3357 25 6 9.9054 -7.7546 4.5203 26 7 10.2284 -6.9902 3.4950 27 6 8.0640 -5.3724 0.1691 28 1 -0.4850 0.8401 0.0004 29 1 3.8744 -0.6801 0.8911 30 1 3.8751 -0.6804 -0.8888 31 1 3.6584 -3.1503 -0.8892 32 1 3.6577 -3.1506 0.8908 33 1 8.5009 -2.2334 1.0619 34 1 7.4319 -3.2458 2.0806 35 1 10.2852 -6.9498 0.2003 36 1 11.2357 -5.9521 1.3268 37 1 8.8383 -8.6760 0.9919 38 1 8.2070 -10.1646 2.8801 39 1 8.9175 -9.5371 5.1786 40 1 10.2183 -7.4736 5.5149 41 1 7.2956 -5.9677 0.6623 42 1 8.3057 -5.7991 -0.8043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766932065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:13 Heat of formation + Delta-G solvation = -105.743180 kcal Electronic energy + Delta-G solvation = -25609.470924 eV Core-core repulsion = 21746.706830 eV Total energy + Delta-G solvation = -3862.764094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15597 -41.24562 -40.61887 -38.02599 -37.27449 -35.40708 -34.92529 -33.35860 -32.81360 -31.96394 -28.91966 -28.12618 -27.14900 -24.84787 -24.36163 -23.18496 -22.61954 -21.60629 -20.56619 -19.30105 -18.68531 -18.25664 -17.79262 -17.66673 -17.36592 -17.08891 -16.59408 -16.50697 -16.25537 -15.88356 -15.35197 -15.06907 -14.85028 -14.69408 -14.42912 -14.35987 -14.13108 -14.02554 -13.73885 -13.29206 -13.15947 -13.05689 -12.73838 -12.65707 -12.51464 -12.46705 -12.28202 -11.81277 -11.58435 -11.50001 -11.42035 -10.99406 -10.83411 -10.80220 -10.47319 -10.04227 -9.81370 -8.33714 -6.41652 0.05959 0.34674 1.08541 1.39260 1.41271 1.45739 1.51837 1.53876 2.00172 2.35090 2.91487 3.01676 3.07362 3.23850 3.33542 3.64331 3.71418 3.79720 3.99438 4.06020 4.15325 4.19782 4.21603 4.21739 4.37304 4.42819 4.55246 4.55710 4.65132 4.71962 4.75805 4.81517 4.83966 5.06426 5.16187 5.24575 5.31236 5.41583 5.51618 5.55605 5.75889 5.96140 6.16213 6.64554 6.65847 7.04394 7.06170 7.23657 8.82287 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.002444 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.971589 B =11454.673398 C =11876.754654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.541 4.541 8 H 0.036 0.964 9 C -0.005 4.005 10 C 0.094 3.906 11 O -0.355 6.355 12 C 0.470 3.530 13 O -0.532 6.532 14 C -0.082 4.082 15 H 0.168 0.832 16 C -0.141 4.141 17 C 0.516 3.484 18 O -0.556 6.556 19 N -0.608 5.608 20 C 0.176 3.824 21 C 0.079 3.921 22 C -0.157 4.157 23 C -0.083 4.083 24 C -0.169 4.169 25 C 0.074 3.926 26 N -0.505 5.505 27 C 0.118 3.882 28 H 0.270 0.730 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.075 0.925 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.834 -17.924 0.800 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.579 4.579 8 H 0.054 0.946 9 C -0.043 4.043 10 C 0.021 3.979 11 O -0.271 6.271 12 C 0.313 3.687 13 O -0.422 6.422 14 C -0.101 4.101 15 H 0.186 0.814 16 C -0.181 4.181 17 C 0.305 3.695 18 O -0.434 6.434 19 N -0.342 5.342 20 C 0.054 3.946 21 C -0.059 4.059 22 C -0.177 4.177 23 C -0.109 4.109 24 C -0.189 4.189 25 C -0.082 4.082 26 N -0.215 5.215 27 C -0.004 4.004 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.117 0.883 35 H 0.158 0.842 36 H 0.103 0.897 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.180 0.820 41 H 0.093 0.907 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 24.463 -17.234 1.337 29.953 hybrid contribution -1.151 -0.164 0.318 1.205 sum 23.312 -17.398 1.655 29.135 Atomic orbital electron populations 1.70042 1.08353 1.28574 1.51506 1.25946 0.95638 1.03573 0.93522 0.85624 0.79565 0.77748 0.79565 1.18673 1.20949 1.16649 1.21131 0.90852 0.93725 1.52204 0.94580 1.19472 0.94024 0.92229 0.98556 1.22959 0.74003 0.99659 1.01317 1.86468 1.24430 1.33259 1.82956 1.23691 0.92191 0.81173 0.71616 1.90669 1.67913 1.37124 1.46450 1.21958 0.86256 0.98934 1.02985 0.81415 1.22321 0.96385 1.01757 0.97606 1.21048 0.86395 0.83131 0.78964 1.90740 1.39201 1.76728 1.36733 1.48294 1.24693 1.14933 1.46234 1.20390 0.91305 0.86505 0.96360 1.21921 0.96134 0.94944 0.92947 1.22329 0.98304 0.94797 1.02257 1.22051 0.96634 0.99901 0.92291 1.22517 0.98725 0.98178 0.99444 1.23122 0.95341 0.91646 0.98139 1.67528 1.21141 1.32335 1.00525 1.22150 0.86187 0.94363 0.97702 0.92117 0.94782 0.94498 0.91901 0.92571 0.84885 0.88278 0.84169 0.89689 0.81912 0.81896 0.82236 0.81957 0.90676 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 2 C 0.01 0.64 5.47 84.65 0.46 1.10 16 3 Si 0.95 42.63 27.47 68.60 1.88 44.51 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 7 C -0.54 -30.51 9.66 25.60 0.25 -30.26 16 8 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 9 C -0.01 -0.24 4.42 29.85 0.13 -0.11 16 10 C 0.09 3.72 5.40 71.98 0.39 4.11 16 11 O -0.36 -11.43 10.20 -51.41 -0.52 -11.96 16 12 C 0.47 12.56 7.18 71.23 0.51 13.07 16 13 O -0.53 -17.11 15.32 21.94 0.34 -16.77 16 14 C -0.08 -1.37 3.66 -10.48 -0.04 -1.41 16 15 H 0.17 1.65 8.14 -2.39 -0.02 1.63 16 16 C -0.14 -2.77 6.40 30.59 0.20 -2.57 16 17 C 0.52 12.45 8.02 87.90 0.71 13.16 16 18 O -0.56 -18.33 17.60 -3.06 -0.05 -18.38 16 19 N -0.61 -10.81 2.92 -822.33 -2.40 -13.21 16 20 C 0.18 2.69 6.24 85.63 0.53 3.22 16 21 C 0.08 1.49 6.36 42.55 0.27 1.76 16 22 C -0.16 -2.10 9.72 22.36 0.22 -1.88 16 23 C -0.08 -1.01 10.18 22.47 0.23 -0.78 16 24 C -0.17 -2.30 10.11 22.36 0.23 -2.08 16 25 C 0.07 1.42 11.18 84.67 0.95 2.36 16 26 N -0.51 -12.23 10.27 -183.89 -1.89 -14.12 16 27 C 0.12 1.67 6.66 86.83 0.58 2.25 16 28 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 30 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 31 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 32 H 0.06 2.31 8.13 -2.38 -0.02 2.29 16 33 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.10 2.22 7.89 -2.39 -0.02 2.20 16 35 H 0.14 0.85 8.04 -2.39 -0.02 0.84 16 36 H 0.08 1.60 7.93 -2.39 -0.02 1.58 16 37 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.07 1.36 7.06 -2.39 -0.02 1.34 16 42 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -80.50 364.07 4.23 -76.27 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.97 Total: 9.47 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 5.61 Total: 1.95 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -3.99 Total: -85.08 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -0.24 Total: -47.11 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.51 kcal Total: -80.50 4.23 -76.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766932065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.473 kcal (2) G-P(sol) polarization free energy of solvation -80.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds