Wall clock time and date at job start Tue Mar 31 2020 13:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46991 * 2 1 4 4 C 1.53000 * 110.65558 * 177.79174 * 3 2 1 5 5 C 1.53004 * 109.47171 * 187.21217 * 4 3 2 6 6 N 1.47309 * 110.60138 * 54.87285 * 3 2 1 7 7 C 1.34525 * 106.62054 * 241.24897 * 6 3 2 8 8 O 1.21541 * 123.77279 * 180.20553 * 7 6 3 9 9 N 1.33791 * 112.45727 * 0.38363 * 7 6 3 10 10 C 1.40205 * 124.17587 * 179.85911 * 9 7 6 11 11 C 1.38919 * 120.02618 * 185.82488 * 10 9 7 12 12 C 1.38170 * 120.06663 * 179.70870 * 11 10 9 13 13 C 1.38162 * 120.13756 * 0.26836 * 12 11 10 14 14 C 1.38895 * 120.05920 * 359.97438 * 13 12 11 15 15 O 1.35758 * 120.03739 * 180.02562 * 14 13 12 16 16 C 1.34831 * 116.99630 * 354.55038 * 15 14 13 17 17 H 1.07997 * 120.00378 * 5.04672 * 16 15 14 18 18 C 1.38654 * 119.99823 * 185.05232 * 16 15 14 19 19 N 1.31554 * 119.99921 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00063 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47448 * 90.00132 * 20 18 16 22 22 H 1.48504 * 109.47208 * 210.00504 * 20 18 16 23 23 H 1.48506 * 109.47171 * 329.99922 * 20 18 16 24 24 C 1.38659 * 120.03469 * 6.05921 * 10 9 7 25 25 C 1.34765 * 111.64387 * 359.59871 * 9 7 6 26 26 O 1.21234 * 127.15685 * 180.19594 * 25 9 7 27 27 H 1.08998 * 109.47368 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47214 * 299.99738 * 1 2 3 29 29 H 1.08996 * 109.47368 * 59.99835 * 1 2 3 30 30 H 1.09003 * 109.46757 * 239.99988 * 2 1 3 31 31 H 1.08995 * 109.47130 * 119.99673 * 2 1 3 32 32 H 1.09000 * 109.46664 * 307.20827 * 4 3 2 33 33 H 1.08997 * 109.47285 * 67.20809 * 4 3 2 34 34 H 1.09000 * 109.47009 * 299.99399 * 5 4 3 35 35 H 1.08997 * 109.47349 * 59.99631 * 5 4 3 36 36 H 1.09003 * 109.47273 * 179.97438 * 5 4 3 37 37 H 0.96999 * 126.68763 * 61.51155 * 6 3 2 38 38 H 1.07992 * 119.96825 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.92879 * 180.29927 * 12 11 10 40 40 H 1.08000 * 119.97198 * 180.02562 * 13 12 11 41 41 H 0.97001 * 119.99905 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.07009 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5686 1.4745 0.0552 5 6 4.0424 2.9182 0.2351 6 7 1.4647 2.1956 1.1278 7 6 0.7548 3.2058 0.5936 8 8 0.1486 4.0278 1.2524 9 7 0.7875 3.2022 -0.7439 10 6 0.1303 4.1422 -1.5503 11 6 0.1215 3.9884 -2.9309 12 6 -0.5309 4.9110 -3.7260 13 6 -1.1717 5.9918 -3.1515 14 6 -1.1620 6.1537 -1.7721 15 8 -1.7922 7.2156 -1.2080 16 6 -2.3109 8.1355 -2.0463 17 1 -2.2870 7.9685 -3.1130 18 6 -2.8750 9.2960 -1.5388 19 7 -3.3815 10.1933 -2.3566 20 14 -2.9169 9.5847 0.3063 21 1 -1.6830 10.2975 0.7240 22 1 -4.1045 10.4066 0.6518 23 1 -2.9968 8.2793 1.0099 24 6 -0.5072 5.2287 -0.9709 25 6 1.5347 2.1867 -1.2201 26 8 1.7562 1.9230 -2.3825 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9145 0.8713 0.8946 33 1 3.9742 1.0720 -0.8730 34 1 3.6965 3.5213 -0.6044 35 1 3.6368 3.3207 1.1632 36 1 5.1314 2.9409 0.2748 37 1 1.5790 2.0031 2.0716 38 1 0.6215 3.1446 -3.3829 39 1 -0.5404 4.7867 -4.7989 40 1 -1.6812 6.7111 -3.7756 41 1 -3.7765 11.0050 -2.0016 42 1 -0.4988 5.3521 0.1020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:11 Heat of formation + Delta-G solvation = -32.076860 kcal Electronic energy + Delta-G solvation = -27416.125710 eV Core-core repulsion = 23556.556027 eV Total energy + Delta-G solvation = -3859.569683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.09050 -39.21696 -38.83441 -37.59902 -36.47158 -35.06726 -32.74455 -32.60836 -32.37242 -29.84119 -28.97108 -27.24691 -25.37986 -24.15013 -23.65205 -22.56225 -21.60460 -20.88664 -20.20609 -18.36507 -17.76232 -17.28419 -17.15047 -16.21598 -16.02953 -15.54732 -15.25317 -14.89297 -14.73458 -14.48869 -14.27292 -13.95868 -13.85008 -13.73655 -13.71381 -13.25622 -12.99077 -12.42266 -12.30185 -12.13387 -12.06224 -12.02793 -11.80832 -11.52045 -11.45143 -11.37481 -11.16364 -10.92295 -10.41270 -10.29264 -10.13512 -9.74420 -9.68956 -9.33194 -8.86339 -7.99182 -7.38372 -6.40653 -4.07539 1.39923 1.87533 2.08707 2.19885 2.88127 3.11169 3.25953 3.29911 3.46859 3.62408 3.95660 4.27202 4.27281 4.47659 4.73774 4.74815 4.81522 4.85588 4.93236 5.09455 5.11945 5.23653 5.29077 5.45752 5.49253 5.51525 5.57850 5.60552 5.66147 5.86748 5.87914 5.91935 6.04376 6.20697 6.30937 6.59337 6.64320 6.84535 7.08556 7.20572 7.26260 7.38622 7.55401 7.80093 8.01774 8.08614 8.94583 9.56580 10.66565 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.003733 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.068661 B = 7499.758369 C = 8064.648575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.115 4.115 3 C 0.122 3.878 4 C -0.116 4.116 5 C -0.161 4.161 6 N -0.718 5.718 7 C 0.702 3.298 8 O -0.519 6.519 9 N -0.510 5.510 10 C 0.160 3.840 11 C -0.219 4.219 12 C -0.060 4.060 13 C -0.223 4.223 14 C 0.173 3.827 15 O -0.211 6.211 16 C -0.390 4.390 17 H 0.108 0.892 18 C 0.066 3.934 19 N -0.878 5.878 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.257 1.257 24 C -0.203 4.203 25 C 0.533 3.467 26 O -0.453 6.453 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.439 0.561 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.280 0.720 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.358 -21.177 5.903 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.153 4.153 3 C 0.031 3.969 4 C -0.154 4.154 5 C -0.218 4.218 6 N -0.384 5.384 7 C 0.403 3.597 8 O -0.391 6.391 9 N -0.247 5.247 10 C 0.070 3.930 11 C -0.240 4.240 12 C -0.078 4.078 13 C -0.243 4.243 14 C 0.120 3.880 15 O -0.115 6.115 16 C -0.466 4.466 17 H 0.125 0.875 18 C -0.138 4.138 19 N -0.516 5.516 20 Si 0.728 3.272 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.181 1.181 24 C -0.224 4.224 25 C 0.320 3.680 26 O -0.322 6.322 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.284 0.716 38 H 0.155 0.845 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.090 0.910 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.946 -20.539 5.792 24.960 hybrid contribution -0.094 0.276 0.966 1.009 sum 12.852 -20.262 6.758 24.928 Atomic orbital electron populations 1.21856 0.94584 1.02797 1.02691 1.21751 0.97199 0.91889 1.04482 1.21652 0.96425 0.94111 0.84703 1.21767 0.90042 0.99172 1.04462 1.21846 1.01920 0.95418 1.02660 1.45593 1.53792 1.30008 1.08970 1.15834 0.80208 0.82377 0.81312 1.90965 1.45492 1.39745 1.62947 1.43652 1.45811 1.27745 1.07518 1.17207 0.97275 0.89223 0.89308 1.20897 1.08486 1.03932 0.90669 1.20639 0.95314 0.93094 0.98789 1.21413 1.06645 1.01282 0.94962 1.18761 0.90400 0.87987 0.90886 1.83590 1.62621 1.29038 1.36296 1.20790 1.37350 0.97286 0.91147 0.87473 1.24448 0.95309 0.93929 1.00116 1.69645 1.37406 1.09137 1.35376 0.86213 0.77873 0.79373 0.83738 1.19809 1.20740 1.18118 1.20547 1.04671 0.95053 1.02135 1.20694 0.77208 0.79939 0.90187 1.90703 1.56198 1.67608 1.17668 0.91378 0.91935 0.92659 0.89164 0.89544 0.89537 0.89188 0.92713 0.91865 0.91413 0.71643 0.84482 0.86266 0.84536 0.91017 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.39 37.16 0.35 -1.00 16 2 C -0.11 -0.74 5.36 -26.73 -0.14 -0.89 16 3 C 0.12 1.06 0.87 -132.10 -0.11 0.95 16 4 C -0.12 -0.76 5.34 -26.73 -0.14 -0.91 16 5 C -0.16 -1.35 9.35 37.16 0.35 -1.00 16 6 N -0.72 -6.75 3.94 -52.94 -0.21 -6.96 16 7 C 0.70 10.45 8.31 -88.02 -0.73 9.71 16 8 O -0.52 -9.72 14.66 5.33 0.08 -9.64 16 9 N -0.51 -8.11 2.83 -64.37 -0.18 -8.29 16 10 C 0.16 3.10 6.56 -83.62 -0.55 2.55 16 11 C -0.22 -4.08 9.32 -39.35 -0.37 -4.44 16 12 C -0.06 -1.12 10.03 -39.63 -0.40 -1.52 16 13 C -0.22 -4.93 9.17 -39.37 -0.36 -5.29 16 14 C 0.17 4.20 6.64 -39.13 -0.26 3.94 16 15 O -0.21 -5.78 8.58 0.02 0.00 -5.78 16 16 C -0.39 -11.18 9.95 30.89 0.31 -10.88 16 17 H 0.11 3.10 5.43 -52.49 -0.29 2.81 16 18 C 0.07 1.87 5.49 -17.52 -0.10 1.77 16 19 N -0.88 -25.58 13.96 55.48 0.77 -24.81 16 20 Si 0.90 22.28 28.62 -169.99 -4.86 17.42 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.26 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.20 -4.52 9.20 -39.22 -0.36 -4.88 16 25 C 0.53 7.07 4.66 -10.56 -0.05 7.02 16 26 O -0.45 -6.75 15.06 5.60 0.08 -6.66 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.55 7.53 -51.93 -0.39 0.16 16 29 H 0.05 0.60 7.26 -51.93 -0.38 0.22 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.60 7.42 -51.93 -0.39 0.22 16 35 H 0.06 0.55 7.42 -51.93 -0.39 0.16 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.44 2.83 8.96 -40.82 -0.37 2.46 16 38 H 0.14 2.39 5.36 -52.49 -0.28 2.11 16 39 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 40 H 0.14 3.09 5.63 -52.49 -0.30 2.80 16 41 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.16 3.59 5.18 -52.49 -0.27 3.32 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -33.01 344.01 -6.83 -39.85 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.13 Total: 4.56 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.57 Total: -4.87 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.38 Total: -40.06 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.16 Total: -22.08 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.86 Total: 17.42 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.01 -6.83 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.768 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds