Wall clock time and date at job start Tue Mar 31 2020 13:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46991 * 2 1 4 4 C 1.53000 * 110.65558 * 177.79174 * 3 2 1 5 5 C 1.53004 * 109.47171 * 187.21217 * 4 3 2 6 6 N 1.47309 * 110.60138 * 54.87285 * 3 2 1 7 7 C 1.34525 * 106.62054 * 241.24897 * 6 3 2 8 8 O 1.21541 * 123.77279 * 180.20553 * 7 6 3 9 9 N 1.33791 * 112.45727 * 0.38363 * 7 6 3 10 10 C 1.40205 * 124.17587 * 179.85911 * 9 7 6 11 11 C 1.38919 * 120.02618 * 185.82488 * 10 9 7 12 12 C 1.38170 * 120.06663 * 179.70870 * 11 10 9 13 13 C 1.38162 * 120.13756 * 0.26836 * 12 11 10 14 14 C 1.38895 * 120.05920 * 359.97438 * 13 12 11 15 15 O 1.35758 * 120.03739 * 180.02562 * 14 13 12 16 16 C 1.34831 * 116.99630 * 354.55038 * 15 14 13 17 17 H 1.07997 * 120.00378 * 5.04672 * 16 15 14 18 18 C 1.38654 * 119.99823 * 185.05232 * 16 15 14 19 19 N 1.31554 * 119.99921 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00063 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47448 * 90.00132 * 20 18 16 22 22 H 1.48504 * 109.47208 * 210.00504 * 20 18 16 23 23 H 1.48506 * 109.47171 * 329.99922 * 20 18 16 24 24 C 1.38659 * 120.03469 * 6.05921 * 10 9 7 25 25 C 1.34765 * 111.64387 * 359.59871 * 9 7 6 26 26 O 1.21234 * 127.15685 * 180.19594 * 25 9 7 27 27 H 1.08998 * 109.47368 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47214 * 299.99738 * 1 2 3 29 29 H 1.08996 * 109.47368 * 59.99835 * 1 2 3 30 30 H 1.09003 * 109.46757 * 239.99988 * 2 1 3 31 31 H 1.08995 * 109.47130 * 119.99673 * 2 1 3 32 32 H 1.09000 * 109.46664 * 307.20827 * 4 3 2 33 33 H 1.08997 * 109.47285 * 67.20809 * 4 3 2 34 34 H 1.09000 * 109.47009 * 299.99399 * 5 4 3 35 35 H 1.08997 * 109.47349 * 59.99631 * 5 4 3 36 36 H 1.09003 * 109.47273 * 179.97438 * 5 4 3 37 37 H 0.96999 * 126.68763 * 61.51155 * 6 3 2 38 38 H 1.07992 * 119.96825 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.92879 * 180.29927 * 12 11 10 40 40 H 1.08000 * 119.97198 * 180.02562 * 13 12 11 41 41 H 0.97001 * 119.99905 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.07009 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5686 1.4745 0.0552 5 6 4.0424 2.9182 0.2351 6 7 1.4647 2.1956 1.1278 7 6 0.7548 3.2058 0.5936 8 8 0.1486 4.0278 1.2524 9 7 0.7875 3.2022 -0.7439 10 6 0.1303 4.1422 -1.5503 11 6 0.1215 3.9884 -2.9309 12 6 -0.5309 4.9110 -3.7260 13 6 -1.1717 5.9918 -3.1515 14 6 -1.1620 6.1537 -1.7721 15 8 -1.7922 7.2156 -1.2080 16 6 -2.3109 8.1355 -2.0463 17 1 -2.2870 7.9685 -3.1130 18 6 -2.8750 9.2960 -1.5388 19 7 -3.3815 10.1933 -2.3566 20 14 -2.9169 9.5847 0.3063 21 1 -1.6830 10.2975 0.7240 22 1 -4.1045 10.4066 0.6518 23 1 -2.9968 8.2793 1.0099 24 6 -0.5072 5.2287 -0.9709 25 6 1.5347 2.1867 -1.2201 26 8 1.7562 1.9230 -2.3825 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9145 0.8713 0.8946 33 1 3.9742 1.0720 -0.8730 34 1 3.6965 3.5213 -0.6044 35 1 3.6368 3.3207 1.1632 36 1 5.1314 2.9409 0.2748 37 1 1.5790 2.0031 2.0716 38 1 0.6215 3.1446 -3.3829 39 1 -0.5404 4.7867 -4.7989 40 1 -1.6812 6.7111 -3.7756 41 1 -3.7765 11.0050 -2.0016 42 1 -0.4988 5.3521 0.1020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:10 Heat of formation + Delta-G solvation = -53.904888 kcal Electronic energy + Delta-G solvation = -27417.072244 eV Core-core repulsion = 23556.556027 eV Total energy + Delta-G solvation = -3860.516217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.18914 -40.96688 -40.01673 -38.98564 -37.83897 -36.38402 -34.49934 -33.54366 -33.32959 -31.49100 -30.59279 -28.03879 -27.36548 -25.31920 -25.06975 -23.12899 -23.08303 -22.26975 -21.31637 -20.02251 -19.46009 -18.61158 -18.32806 -17.44977 -17.21559 -16.96150 -16.85695 -16.22933 -15.86140 -15.77072 -15.71357 -15.44310 -15.12022 -14.75338 -14.62042 -14.58520 -14.35084 -14.27302 -13.82455 -13.57297 -13.35308 -12.99162 -12.82115 -12.72490 -12.52638 -12.35268 -12.21370 -12.11722 -11.94586 -11.82125 -11.75633 -11.22788 -10.98604 -10.94131 -10.58957 -9.64411 -9.16531 -8.54221 -6.27191 0.09018 0.47844 0.48362 0.92550 1.27759 1.31167 1.49290 1.85960 2.00920 2.25233 2.68301 2.70191 2.91896 3.05111 3.28455 3.63154 3.84872 4.03589 4.08682 4.20769 4.23471 4.25736 4.27743 4.29123 4.36310 4.59245 4.67760 4.69684 4.73019 4.98285 4.98760 5.00763 5.03819 5.10377 5.22798 5.25136 5.25633 5.28024 5.52733 5.64637 5.75913 5.80354 5.96796 6.05053 6.24961 6.79821 6.96944 7.52005 8.56829 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.003733 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.068661 B = 7499.758369 C = 8064.648575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C 0.132 3.868 4 C -0.109 4.109 5 C -0.165 4.165 6 N -0.687 5.687 7 C 0.696 3.304 8 O -0.566 6.566 9 N -0.521 5.521 10 C 0.167 3.833 11 C -0.203 4.203 12 C -0.047 4.047 13 C -0.235 4.235 14 C 0.143 3.857 15 O -0.240 6.240 16 C -0.403 4.403 17 H 0.090 0.910 18 C 0.018 3.982 19 N -0.915 5.915 20 Si 0.962 3.038 21 H -0.265 1.265 22 H -0.261 1.261 23 H -0.271 1.271 24 C -0.215 4.215 25 C 0.524 3.476 26 O -0.469 6.469 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.022 0.978 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.020 0.980 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.456 0.544 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.125 0.875 41 H 0.286 0.714 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.887 -24.944 6.987 30.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.146 4.146 3 C 0.043 3.957 4 C -0.147 4.147 5 C -0.222 4.222 6 N -0.353 5.353 7 C 0.397 3.603 8 O -0.441 6.441 9 N -0.259 5.259 10 C 0.075 3.925 11 C -0.223 4.223 12 C -0.065 4.065 13 C -0.254 4.254 14 C 0.093 3.907 15 O -0.147 6.147 16 C -0.479 4.479 17 H 0.108 0.892 18 C -0.181 4.181 19 N -0.556 5.556 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.185 1.185 23 H -0.196 1.196 24 C -0.236 4.236 25 C 0.314 3.686 26 O -0.339 6.339 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.122 0.878 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.119 0.881 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.305 0.695 38 H 0.176 0.824 39 H 0.177 0.823 40 H 0.142 0.858 41 H 0.096 0.904 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.534 -24.393 6.887 29.728 hybrid contribution -0.692 1.131 0.517 1.423 sum 14.842 -23.262 7.404 28.569 Atomic orbital electron populations 1.21894 0.96272 1.03453 1.00668 1.21868 0.95551 0.89935 1.07229 1.21938 0.97981 0.94471 0.81353 1.21878 0.87455 0.98456 1.06916 1.21886 1.03190 0.96284 1.00853 1.45476 1.51727 1.27974 1.10164 1.16024 0.80447 0.82993 0.80863 1.90935 1.47714 1.41853 1.63631 1.43863 1.46176 1.27839 1.07996 1.17339 0.96012 0.88893 0.90249 1.21245 1.06954 1.03824 0.90280 1.21037 0.93321 0.91317 1.00851 1.21452 1.07528 1.02401 0.94041 1.19214 0.91355 0.87878 0.92295 1.83544 1.64681 1.30114 1.36396 1.20789 1.38055 0.98222 0.90805 0.89242 1.25162 0.95119 0.93668 1.04150 1.69705 1.38913 1.09918 1.37017 0.85352 0.78825 0.78695 0.78685 1.19040 1.18500 1.19598 1.20560 1.05519 0.95960 1.01569 1.21646 0.76183 0.79219 0.91547 1.90673 1.56593 1.67818 1.18820 0.89469 0.92815 0.95838 0.87827 0.85299 0.85171 0.88144 0.96115 0.92438 0.89582 0.69522 0.82435 0.82298 0.85773 0.90381 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.39 71.98 0.68 -1.60 16 2 C -0.11 -0.87 5.36 30.59 0.16 -0.70 16 3 C 0.13 1.82 0.87 2.98 0.00 1.82 16 4 C -0.11 -0.91 5.34 30.60 0.16 -0.75 16 5 C -0.16 -2.31 9.35 71.98 0.67 -1.63 16 6 N -0.69 -11.16 3.94 -439.83 -1.73 -12.89 16 7 C 0.70 20.42 8.31 179.44 1.49 21.91 16 8 O -0.57 -21.77 14.66 -3.85 -0.06 -21.82 16 9 N -0.52 -16.31 2.83 -594.81 -1.68 -17.99 16 10 C 0.17 6.51 6.56 38.06 0.25 6.75 16 11 C -0.20 -7.31 9.32 22.42 0.21 -7.10 16 12 C -0.05 -1.72 10.03 22.24 0.22 -1.50 16 13 C -0.23 -10.73 9.17 22.41 0.21 -10.52 16 14 C 0.14 7.31 6.64 22.56 0.15 7.46 16 15 O -0.24 -13.97 8.58 -22.84 -0.20 -14.17 16 16 C -0.40 -24.43 9.95 67.92 0.68 -23.75 16 17 H 0.09 5.55 5.43 -2.91 -0.02 5.53 16 18 C 0.02 1.09 5.49 84.83 0.47 1.56 16 19 N -0.92 -55.24 13.96 21.61 0.30 -54.94 16 20 Si 0.96 47.52 28.62 68.60 1.96 49.48 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.27 -13.86 7.11 99.48 0.71 -13.16 16 24 C -0.22 -10.00 9.20 22.50 0.21 -9.79 16 25 C 0.52 12.88 4.66 87.94 0.41 13.28 16 26 O -0.47 -12.90 15.06 -2.89 -0.04 -12.94 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.83 7.53 -2.38 -0.02 0.81 16 29 H 0.02 0.46 7.26 -2.39 -0.02 0.44 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.02 0.42 7.42 -2.39 -0.02 0.40 16 35 H 0.06 0.86 7.42 -2.39 -0.02 0.84 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.46 4.32 8.96 -92.71 -0.83 3.49 16 38 H 0.16 5.13 5.36 -2.91 -0.02 5.12 16 39 H 0.16 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.12 5.97 5.63 -2.91 -0.02 5.95 16 41 H 0.29 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.14 7.03 5.18 -2.91 -0.02 7.02 16 Total: -1.00 -78.29 344.01 4.76 -73.52 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.25 Total: 16.30 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.97 Total: -4.56 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -3.12 Total: -85.82 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.30 Total: -48.93 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.96 Total: 49.48 kcal Total: -78.29 4.76 -73.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.617 kcal (2) G-P(sol) polarization free energy of solvation -78.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds