Wall clock time and date at job start Tue Mar 31 2020 12:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48496 * 109.47124 * 240.00086 * 3 2 1 5 5 H 1.48506 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47180 * 119.99990 * 3 2 1 7 7 C 1.38649 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00021 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99392 * 185.37957 * 9 7 2 11 11 C 1.38952 * 120.03188 * 185.66672 * 10 9 7 12 12 C 1.38122 * 120.07360 * 179.97438 * 11 10 9 13 13 C 1.38203 * 120.13360 * 0.04927 * 12 11 10 14 14 C 1.38910 * 120.06884 * 359.95230 * 13 12 11 15 15 N 1.39942 * 120.03444 * 180.30258 * 14 13 12 16 16 C 1.34780 * 120.00077 * 325.03502 * 15 14 13 17 17 O 1.21585 * 119.99801 * 354.53253 * 16 15 14 18 18 N 1.34779 * 120.00147 * 174.52534 * 16 15 14 19 19 C 1.46494 * 119.99828 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47039 * 180.02562 * 19 18 16 21 21 H 1.09005 * 109.70590 * 305.58286 * 20 19 18 22 22 C 1.53500 * 109.70843 * 185.00301 * 20 19 18 23 23 C 1.53257 * 108.16083 * 177.91423 * 22 20 19 24 24 C 1.50448 * 109.43852 * 46.81823 * 23 22 20 25 25 C 1.30679 * 122.49464 * 342.54654 * 24 23 22 26 26 O 1.35129 * 123.35196 * 0.38422 * 25 24 23 27 27 C 1.38732 * 120.03593 * 5.64745 * 10 9 7 28 28 H 0.97003 * 119.99567 * 0.02562 * 1 2 3 29 29 H 1.08008 * 119.96340 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.93410 * 180.02562 * 12 11 10 31 31 H 1.08000 * 119.96131 * 179.97438 * 13 12 11 32 32 H 0.97003 * 119.99994 * 145.04168 * 15 14 13 33 33 H 0.97002 * 119.99797 * 0.02562 * 18 16 15 34 34 H 1.09000 * 109.47694 * 300.00365 * 19 18 16 35 35 H 1.09002 * 109.47349 * 60.00363 * 19 18 16 36 36 H 1.09003 * 109.72421 * 297.57497 * 22 20 19 37 37 H 1.09001 * 109.72764 * 58.24527 * 22 20 19 38 38 H 1.08994 * 109.48125 * 166.81429 * 23 22 20 39 39 H 1.09004 * 109.47560 * 286.83197 * 23 22 20 40 40 H 1.07998 * 118.75129 * 162.51532 * 24 23 22 41 41 H 1.08001 * 118.32713 * 180.38461 * 25 24 23 42 42 H 1.07993 * 120.06805 * 0.04215 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0695 -3.5041 0.1155 11 6 1.4537 -4.7449 0.0054 12 6 2.2007 -5.9010 0.1206 13 6 3.5621 -5.8277 0.3466 14 6 4.1836 -4.5904 0.4576 15 7 5.5633 -4.5171 0.6801 16 6 6.1724 -5.4428 1.4473 17 8 5.5112 -6.2828 2.0266 18 7 7.5143 -5.4375 1.5723 19 6 8.1763 -6.4441 2.4058 20 6 9.6888 -6.2154 2.3771 21 1 10.0386 -6.1991 1.3448 22 6 10.3970 -7.3395 3.1458 23 6 11.9085 -7.1049 3.0503 24 6 12.2112 -5.6621 3.3509 25 6 11.2957 -4.7303 3.3140 26 8 10.0009 -4.9725 3.0127 27 6 3.4362 -3.4273 0.3414 28 1 -0.4850 0.8401 -0.0004 29 1 0.3898 -4.8053 -0.1704 30 1 1.7198 -6.8641 0.0343 31 1 4.1434 -6.7335 0.4367 32 1 6.0813 -3.7999 0.2823 33 1 8.0418 -4.7672 1.1104 34 1 7.8160 -6.3610 3.4311 35 1 7.9516 -7.4390 2.0213 36 1 10.0874 -7.3223 4.1908 37 1 10.1457 -8.3032 2.7028 38 1 12.4215 -7.7416 3.7710 39 1 12.2509 -7.3460 2.0439 40 1 13.2233 -5.3862 3.6073 41 1 11.5889 -3.7148 3.5356 42 1 3.9170 -2.4641 0.4277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780733486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:56 Heat of formation + Delta-G solvation = -49.294147 kcal Electronic energy + Delta-G solvation = -25347.302263 eV Core-core repulsion = 21486.985982 eV Total energy + Delta-G solvation = -3860.316280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73527 -40.12554 -38.70856 -36.62023 -35.10425 -34.36025 -34.16592 -32.25032 -31.97052 -29.35795 -28.58370 -27.38339 -25.27642 -24.41453 -23.25005 -21.95281 -21.74881 -20.43828 -19.41973 -18.57963 -17.83616 -17.54387 -17.07091 -16.55898 -16.06755 -15.40992 -15.20072 -14.96706 -14.80753 -14.41255 -14.30327 -14.02350 -13.91905 -13.59782 -13.49463 -13.38059 -12.98708 -12.87660 -12.66262 -12.30945 -11.72571 -11.50333 -11.37823 -11.19544 -11.11485 -10.95021 -10.91382 -10.77748 -10.45364 -10.02998 -9.62473 -9.43182 -9.19778 -8.82241 -8.77541 -7.67076 -7.10177 -6.42023 -4.01654 1.89361 2.10266 2.43765 2.65763 2.95105 3.13286 3.14697 3.17561 3.34900 3.98145 4.11124 4.15956 4.37228 4.46265 4.62465 4.65395 4.77500 4.91265 5.12835 5.13391 5.18913 5.29349 5.32017 5.43682 5.48361 5.65814 5.74356 5.87469 6.04315 6.10534 6.12805 6.26049 6.30354 6.33505 6.58989 6.82819 7.04649 7.13826 7.17605 7.31129 7.37056 7.46797 7.86696 8.01874 8.04888 8.65636 9.03312 9.74318 10.76042 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.002554 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.789166 B =10962.216378 C =12596.213713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.391 4.391 8 H 0.089 0.911 9 O -0.176 6.176 10 C 0.169 3.831 11 C -0.202 4.202 12 C -0.063 4.063 13 C -0.204 4.204 14 C 0.200 3.800 15 N -0.682 5.682 16 C 0.704 3.296 17 O -0.571 6.571 18 N -0.745 5.745 19 C 0.149 3.851 20 C 0.077 3.923 21 H 0.079 0.921 22 C -0.153 4.153 23 C -0.081 4.081 24 C -0.286 4.286 25 C 0.057 3.943 26 O -0.317 6.317 27 C -0.257 4.257 28 H 0.270 0.730 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.403 0.597 33 H 0.399 0.601 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.157 0.843 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.696 -11.241 3.198 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.080 6.080 10 C 0.114 3.886 11 C -0.222 4.222 12 C -0.082 4.082 13 C -0.225 4.225 14 C 0.106 3.894 15 N -0.329 5.329 16 C 0.405 3.595 17 O -0.447 6.447 18 N -0.401 5.401 19 C 0.024 3.976 20 C 0.021 3.979 21 H 0.097 0.903 22 C -0.191 4.191 23 C -0.118 4.118 24 C -0.306 4.306 25 C -0.005 4.005 26 O -0.231 6.231 27 C -0.279 4.279 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.237 0.763 33 H 0.233 0.767 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.174 0.826 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.520 -11.705 3.756 25.656 hybrid contribution 1.440 1.471 -0.307 2.081 sum 23.960 -10.234 3.449 26.281 Atomic orbital electron populations 1.70033 1.05911 1.27694 1.46150 1.25270 0.95833 0.98761 0.96645 0.85805 0.78718 0.79955 0.79065 1.19564 1.20299 1.19589 1.21213 0.91619 0.80928 1.53021 0.89337 1.84022 1.33873 1.11351 1.78743 1.19071 0.89454 0.88112 0.91924 1.20236 1.00073 0.89993 1.11857 1.20518 0.93135 0.96907 0.97630 1.20529 0.95139 0.95896 1.10983 1.17164 0.80515 0.93909 0.97820 1.42572 1.07744 1.30085 1.52481 1.15860 0.81624 0.82257 0.79798 1.90955 1.63668 1.39921 1.50204 1.44976 1.05306 1.35778 1.54056 1.21219 0.87876 0.92046 0.96459 1.22781 0.94989 0.83667 0.96472 0.90270 1.22207 0.95993 0.98822 1.02053 1.20334 0.95069 0.94321 1.02036 1.22526 1.00428 0.95163 1.12445 1.22042 0.82662 0.99029 0.96817 1.86000 1.24404 1.38039 1.74648 1.20790 0.94318 0.97247 1.15584 0.92009 0.86415 0.86654 0.86404 0.76287 0.76736 0.90410 0.89458 0.90096 0.89614 0.90417 0.91123 0.86198 0.82577 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.92 9.44 30.88 0.29 -10.63 16 8 H 0.09 2.26 5.29 -52.49 -0.28 1.99 16 9 O -0.18 -5.06 9.76 0.03 0.00 -5.06 16 10 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 11 C -0.20 -4.40 9.99 -39.36 -0.39 -4.80 16 12 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 13 C -0.20 -4.02 8.66 -39.35 -0.34 -4.36 16 14 C 0.20 3.92 6.24 -83.72 -0.52 3.40 16 15 N -0.68 -10.64 5.34 -14.24 -0.08 -10.72 16 16 C 0.70 10.93 8.29 -86.91 -0.72 10.21 16 17 O -0.57 -11.06 14.14 5.29 0.07 -10.99 16 18 N -0.74 -8.14 5.53 -65.23 -0.36 -8.51 16 19 C 0.15 1.40 5.36 -4.04 -0.02 1.38 16 20 C 0.08 0.57 2.88 -26.47 -0.08 0.50 16 21 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 22 C -0.15 -0.94 5.54 -26.34 -0.15 -1.08 16 23 C -0.08 -0.47 6.23 -27.87 -0.17 -0.64 16 24 C -0.29 -1.89 9.97 -36.06 -0.36 -2.25 16 25 C 0.06 0.42 10.88 29.10 0.32 0.74 16 26 O -0.32 -2.86 10.02 -17.09 -0.17 -3.03 16 27 C -0.26 -5.68 9.05 -39.21 -0.35 -6.03 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 29 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 30 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.12 2.27 6.53 -52.49 -0.34 1.93 16 32 H 0.40 4.94 8.84 -40.82 -0.36 4.58 16 33 H 0.40 3.40 8.49 -40.82 -0.35 3.05 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -34.48 356.43 -8.09 -42.57 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.41 Total: 9.87 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -3.25 Total: -10.32 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.32 Total: -43.85 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.10 Total: -19.08 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.48 -8.09 -42.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780733486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.720 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds