Wall clock time and date at job start Tue Mar 31 2020 12:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48496 * 109.47124 * 240.00086 * 3 2 1 5 5 H 1.48506 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47180 * 119.99990 * 3 2 1 7 7 C 1.38649 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00021 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99392 * 185.37957 * 9 7 2 11 11 C 1.38952 * 120.03188 * 185.66672 * 10 9 7 12 12 C 1.38122 * 120.07360 * 179.97438 * 11 10 9 13 13 C 1.38203 * 120.13360 * 0.04927 * 12 11 10 14 14 C 1.38910 * 120.06884 * 359.95230 * 13 12 11 15 15 N 1.39942 * 120.03444 * 180.30258 * 14 13 12 16 16 C 1.34780 * 120.00077 * 325.03502 * 15 14 13 17 17 O 1.21585 * 119.99801 * 354.53253 * 16 15 14 18 18 N 1.34779 * 120.00147 * 174.52534 * 16 15 14 19 19 C 1.46494 * 119.99828 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47039 * 180.02562 * 19 18 16 21 21 H 1.09005 * 109.70590 * 305.58286 * 20 19 18 22 22 C 1.53500 * 109.70843 * 185.00301 * 20 19 18 23 23 C 1.53257 * 108.16083 * 177.91423 * 22 20 19 24 24 C 1.50448 * 109.43852 * 46.81823 * 23 22 20 25 25 C 1.30679 * 122.49464 * 342.54654 * 24 23 22 26 26 O 1.35129 * 123.35196 * 0.38422 * 25 24 23 27 27 C 1.38732 * 120.03593 * 5.64745 * 10 9 7 28 28 H 0.97003 * 119.99567 * 0.02562 * 1 2 3 29 29 H 1.08008 * 119.96340 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.93410 * 180.02562 * 12 11 10 31 31 H 1.08000 * 119.96131 * 179.97438 * 13 12 11 32 32 H 0.97003 * 119.99994 * 145.04168 * 15 14 13 33 33 H 0.97002 * 119.99797 * 0.02562 * 18 16 15 34 34 H 1.09000 * 109.47694 * 300.00365 * 19 18 16 35 35 H 1.09002 * 109.47349 * 60.00363 * 19 18 16 36 36 H 1.09003 * 109.72421 * 297.57497 * 22 20 19 37 37 H 1.09001 * 109.72764 * 58.24527 * 22 20 19 38 38 H 1.08994 * 109.48125 * 166.81429 * 23 22 20 39 39 H 1.09004 * 109.47560 * 286.83197 * 23 22 20 40 40 H 1.07998 * 118.75129 * 162.51532 * 24 23 22 41 41 H 1.08001 * 118.32713 * 180.38461 * 25 24 23 42 42 H 1.07993 * 120.06805 * 0.04215 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0695 -3.5041 0.1155 11 6 1.4537 -4.7449 0.0054 12 6 2.2007 -5.9010 0.1206 13 6 3.5621 -5.8277 0.3466 14 6 4.1836 -4.5904 0.4576 15 7 5.5633 -4.5171 0.6801 16 6 6.1724 -5.4428 1.4473 17 8 5.5112 -6.2828 2.0266 18 7 7.5143 -5.4375 1.5723 19 6 8.1763 -6.4441 2.4058 20 6 9.6888 -6.2154 2.3771 21 1 10.0386 -6.1991 1.3448 22 6 10.3970 -7.3395 3.1458 23 6 11.9085 -7.1049 3.0503 24 6 12.2112 -5.6621 3.3509 25 6 11.2957 -4.7303 3.3140 26 8 10.0009 -4.9725 3.0127 27 6 3.4362 -3.4273 0.3414 28 1 -0.4850 0.8401 -0.0004 29 1 0.3898 -4.8053 -0.1704 30 1 1.7198 -6.8641 0.0343 31 1 4.1434 -6.7335 0.4367 32 1 6.0813 -3.7999 0.2823 33 1 8.0418 -4.7672 1.1104 34 1 7.8160 -6.3610 3.4311 35 1 7.9516 -7.4390 2.0213 36 1 10.0874 -7.3223 4.1908 37 1 10.1457 -8.3032 2.7028 38 1 12.4215 -7.7416 3.7710 39 1 12.2509 -7.3460 2.0439 40 1 13.2233 -5.3862 3.6073 41 1 11.5889 -3.7148 3.5356 42 1 3.9170 -2.4641 0.4277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780733486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:55 Heat of formation + Delta-G solvation = -73.280596 kcal Electronic energy + Delta-G solvation = -25348.342393 eV Core-core repulsion = 21486.985982 eV Total energy + Delta-G solvation = -3861.356411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.75723 -41.07583 -40.38176 -38.27877 -36.14468 -35.63844 -34.86976 -34.21345 -32.75928 -30.94128 -30.16040 -28.23440 -27.25092 -25.04765 -24.03481 -23.47576 -23.17757 -21.81940 -20.27537 -19.80420 -19.38471 -19.10091 -17.78481 -17.52045 -17.09087 -16.81584 -16.46775 -16.39330 -15.97098 -15.87078 -15.57413 -15.46613 -14.98266 -14.89076 -14.56649 -14.45925 -14.06975 -13.86196 -13.65478 -13.51918 -13.26417 -13.13568 -12.76180 -12.59628 -12.45017 -12.14073 -11.84328 -11.74294 -11.58341 -11.43636 -11.31289 -11.09865 -10.71370 -10.22696 -9.33533 -9.31584 -8.82934 -8.44603 -6.13234 0.46783 0.72934 1.36662 1.38215 1.47534 1.52673 1.53220 2.03954 2.19499 2.39890 2.86640 3.10936 3.19605 3.51722 3.57376 3.77501 3.93726 4.10876 4.14015 4.26750 4.35447 4.45261 4.46989 4.51236 4.62358 4.67370 4.75302 4.77568 4.84764 5.00978 5.04367 5.12699 5.17702 5.31663 5.36852 5.40761 5.50081 5.63755 5.69552 5.70645 5.93872 6.03507 6.22752 6.64487 6.91708 6.99684 7.42911 7.79591 8.78230 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.002554 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.789166 B =10962.216378 C =12596.213713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.226 6.226 10 C 0.134 3.866 11 C -0.215 4.215 12 C -0.051 4.051 13 C -0.198 4.198 14 C 0.206 3.794 15 N -0.674 5.674 16 C 0.703 3.297 17 O -0.610 6.610 18 N -0.724 5.724 19 C 0.147 3.853 20 C 0.082 3.918 21 H 0.094 0.906 22 C -0.151 4.151 23 C -0.084 4.084 24 C -0.285 4.285 25 C 0.038 3.962 26 O -0.338 6.338 27 C -0.262 4.262 28 H 0.272 0.728 29 H 0.120 0.880 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.419 0.581 33 H 0.413 0.587 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.131 0.869 41 H 0.170 0.830 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.968 -12.185 3.113 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.132 6.132 10 C 0.083 3.917 11 C -0.235 4.235 12 C -0.069 4.069 13 C -0.219 4.219 14 C 0.111 3.889 15 N -0.323 5.323 16 C 0.403 3.597 17 O -0.489 6.489 18 N -0.380 5.380 19 C 0.023 3.977 20 C 0.026 3.974 21 H 0.111 0.889 22 C -0.189 4.189 23 C -0.121 4.121 24 C -0.304 4.304 25 C -0.024 4.024 26 O -0.253 6.253 27 C -0.284 4.284 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.172 0.828 31 H 0.148 0.852 32 H 0.257 0.743 33 H 0.250 0.750 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.187 0.813 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 25.893 -12.677 3.663 29.062 hybrid contribution 0.588 1.463 -0.231 1.594 sum 26.482 -11.215 3.432 28.962 Atomic orbital electron populations 1.70188 1.08036 1.28838 1.48732 1.26594 0.96847 1.02755 0.95872 0.84654 0.77402 0.74271 0.79933 1.17852 1.19845 1.18324 1.21758 0.92503 0.81376 1.53244 0.88003 1.83988 1.35513 1.12487 1.81247 1.19600 0.90721 0.88037 0.93345 1.20475 1.00636 0.90022 1.12327 1.20916 0.92966 0.97594 0.95438 1.20845 0.95476 0.96267 1.09320 1.17175 0.82263 0.93107 0.96359 1.42430 1.06346 1.30898 1.52578 1.15991 0.82766 0.81596 0.79327 1.90928 1.64894 1.41385 1.51742 1.44864 1.03695 1.36087 1.53358 1.21351 0.89158 0.91977 0.95173 1.22761 0.93375 0.83880 0.97377 0.88862 1.22216 0.96179 0.99101 1.01411 1.20413 0.94746 0.94008 1.02899 1.22784 1.00830 0.95513 1.11284 1.22343 0.82229 1.00080 0.97781 1.85957 1.25480 1.38685 1.75178 1.20807 0.93651 0.98165 1.15742 0.91869 0.86232 0.82761 0.85226 0.74310 0.75027 0.92127 0.88566 0.91074 0.87991 0.89522 0.90133 0.85076 0.81269 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.41 13.67 21.61 0.30 -56.12 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 3 Si 1.02 42.34 29.55 68.60 2.03 44.37 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.41 -23.82 9.44 67.92 0.64 -23.18 16 8 H 0.10 5.32 5.29 -2.91 -0.02 5.31 16 9 O -0.23 -13.61 9.76 -22.82 -0.22 -13.83 16 10 C 0.13 6.79 6.64 22.56 0.15 6.94 16 11 C -0.21 -9.44 9.99 22.41 0.22 -9.21 16 12 C -0.05 -1.86 10.03 22.23 0.22 -1.64 16 13 C -0.20 -7.40 8.66 22.42 0.19 -7.21 16 14 C 0.21 7.84 6.24 38.13 0.24 8.08 16 15 N -0.67 -19.77 5.34 -317.23 -1.69 -21.46 16 16 C 0.70 20.45 8.29 179.05 1.48 21.93 16 17 O -0.61 -22.65 14.14 -3.98 -0.06 -22.70 16 18 N -0.72 -14.23 5.53 -478.54 -2.64 -16.87 16 19 C 0.15 2.50 5.36 86.38 0.46 2.96 16 20 C 0.08 1.04 2.88 30.76 0.09 1.12 16 21 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 22 C -0.15 -1.51 5.54 30.85 0.17 -1.34 16 23 C -0.08 -0.75 6.23 29.85 0.19 -0.57 16 24 C -0.28 -3.12 9.97 25.90 0.26 -2.86 16 25 C 0.04 0.49 10.88 68.11 0.74 1.23 16 26 O -0.34 -5.52 10.02 -84.06 -0.84 -6.36 16 27 C -0.26 -11.59 9.05 22.51 0.20 -11.39 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 30 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.13 4.64 6.53 -2.91 -0.02 4.62 16 32 H 0.42 9.37 8.84 -92.71 -0.82 8.55 16 33 H 0.41 5.93 8.49 -92.71 -0.79 5.14 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.13 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.13 5.58 5.71 -2.91 -0.02 5.56 16 Total: -1.00 -77.68 356.43 2.06 -75.62 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.54 Total: 33.33 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 5.73 Total: -15.97 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -4.04 Total: -94.45 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.12 Total: -42.90 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -77.68 2.06 -75.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780733486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.344 kcal (2) G-P(sol) polarization free energy of solvation -77.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds