Wall clock time and date at job start Tue Mar 31 2020 12:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86796 * 119.99877 * 2 1 4 4 H 1.48492 * 109.47464 * 270.00174 * 3 2 1 5 5 H 1.48499 * 109.46931 * 30.00542 * 3 2 1 6 6 H 1.48498 * 109.46826 * 149.99975 * 3 2 1 7 7 C 1.38648 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 359.97438 * 7 2 1 9 9 O 1.34833 * 119.99767 * 180.02562 * 7 2 1 10 10 C 1.35760 * 116.99976 * 174.61920 * 9 7 2 11 11 C 1.38951 * 120.03166 * 354.07277 * 10 9 7 12 12 C 1.38121 * 120.06788 * 180.27339 * 11 10 9 13 13 C 1.38205 * 120.13778 * 0.02562 * 12 11 10 14 14 C 1.38915 * 120.06702 * 359.97438 * 13 12 11 15 15 N 1.39946 * 120.03380 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99951 * 214.72457 * 15 14 13 17 17 O 1.21580 * 119.99969 * 5.48006 * 16 15 14 18 18 N 1.34778 * 119.99791 * 185.47767 * 16 15 14 19 19 C 1.46499 * 119.99693 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46829 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.69837 * 60.58520 * 20 19 18 22 22 C 1.53503 * 109.70369 * 181.20662 * 20 19 18 23 23 C 1.53243 * 108.16468 * 182.07656 * 22 20 19 24 24 C 1.50440 * 109.44377 * 313.18833 * 23 22 20 25 25 C 1.30682 * 122.49378 * 17.48807 * 24 23 22 26 26 O 1.35129 * 123.34728 * 359.53825 * 25 24 23 27 27 C 1.38731 * 120.03196 * 174.35126 * 10 9 7 28 28 H 0.96995 * 120.00203 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.96476 * 0.27911 * 11 10 9 30 30 H 1.07997 * 119.93294 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.96342 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99895 * 34.72764 * 15 14 13 33 33 H 0.96999 * 119.99932 * 359.97438 * 18 16 15 34 34 H 1.08997 * 109.47445 * 300.00145 * 19 18 16 35 35 H 1.09007 * 109.47024 * 59.99967 * 19 18 16 36 36 H 1.08998 * 109.72998 * 301.75797 * 22 20 19 37 37 H 1.09001 * 109.72571 * 62.43071 * 22 20 19 38 38 H 1.09010 * 109.47162 * 193.19847 * 23 22 20 39 39 H 1.09002 * 109.48108 * 73.18557 * 23 22 20 40 40 H 1.07999 * 118.75282 * 197.51073 * 24 23 22 41 41 H 1.08005 * 118.32357 * 179.56550 * 25 24 23 42 42 H 1.08003 * 120.06859 * 359.74545 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9735 -2.4051 0.1128 11 6 3.2230 -3.5513 0.3445 12 6 3.8497 -4.7762 0.4651 13 6 5.2246 -4.8659 0.3563 14 6 5.9804 -3.7236 0.1248 15 7 7.3726 -3.8151 0.0153 16 6 8.1519 -2.8170 0.4768 17 8 7.6535 -1.8844 1.0768 18 7 9.4837 -2.8528 0.2733 19 6 10.3307 -1.7676 0.7745 20 6 11.7901 -2.0514 0.4130 21 1 11.8957 -2.1097 -0.6703 22 6 12.6862 -0.9324 0.9619 23 6 14.1292 -1.2238 0.5363 24 6 14.4506 -2.6675 0.8113 25 6 13.5243 -3.5667 1.0141 26 8 12.2024 -3.2865 1.0051 27 6 5.3537 -2.4918 0.0028 28 1 -0.4850 0.8400 0.0004 29 1 2.1485 -3.4844 0.4303 30 1 3.2643 -5.6657 0.6455 31 1 5.7117 -5.8251 0.4507 32 1 7.7766 -4.5968 -0.3928 33 1 9.8814 -3.5971 -0.2050 34 1 10.0204 -0.8259 0.3219 35 1 10.2316 -1.7001 1.8579 36 1 12.3687 0.0270 0.5536 37 1 12.6214 -0.9095 2.0498 38 1 14.8102 -0.5861 1.1000 39 1 14.2415 -1.0231 -0.5292 40 1 15.4862 -2.9723 0.8428 41 1 13.8309 -4.5857 1.1986 42 1 5.9391 -1.6022 -0.1769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780733488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:00 Heat of formation + Delta-G solvation = -46.127136 kcal Electronic energy + Delta-G solvation = -25441.647786 eV Core-core repulsion = 21581.468838 eV Total energy + Delta-G solvation = -3860.178948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75877 -40.16702 -38.81885 -36.82906 -35.13707 -34.37544 -34.09932 -32.31778 -32.02850 -29.60419 -28.73415 -27.35389 -25.15840 -24.41648 -23.28391 -22.29362 -21.29967 -20.61049 -19.43644 -18.49857 -18.08411 -17.47740 -17.12379 -16.59553 -16.07276 -15.43190 -15.21623 -15.13402 -14.84788 -14.45420 -14.22014 -14.08806 -13.86067 -13.69200 -13.51484 -13.39113 -12.91293 -12.81623 -12.60386 -12.29956 -12.22618 -11.57556 -11.37792 -11.19574 -11.13520 -10.97562 -10.90800 -10.79657 -10.22382 -9.98099 -9.72522 -9.31892 -9.18315 -8.84210 -8.80230 -7.72053 -7.24837 -6.35511 -4.01776 1.86949 2.04624 2.29363 2.60411 2.93901 3.27835 3.31575 3.33755 3.50604 4.05927 4.15915 4.31661 4.34633 4.45740 4.56803 4.62436 4.77395 4.90346 4.99303 5.13346 5.15980 5.18968 5.32181 5.44273 5.50046 5.61345 5.67197 5.78264 5.86127 6.08667 6.12560 6.17345 6.26701 6.33159 6.45358 6.75240 6.97530 7.14621 7.15496 7.20706 7.38488 7.65919 7.86297 8.00046 8.09633 8.64019 9.00318 9.64222 10.72048 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.002570 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.982583 B =10893.167429 C =12296.988725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.387 4.387 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.174 3.826 11 C -0.233 4.233 12 C -0.059 4.059 13 C -0.228 4.228 14 C 0.195 3.805 15 N -0.682 5.682 16 C 0.700 3.300 17 O -0.564 6.564 18 N -0.743 5.743 19 C 0.148 3.852 20 C 0.078 3.922 21 H 0.080 0.920 22 C -0.153 4.153 23 C -0.081 4.081 24 C -0.284 4.284 25 C 0.056 3.944 26 O -0.318 6.318 27 C -0.187 4.187 28 H 0.279 0.721 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.402 0.598 33 H 0.399 0.601 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.157 0.843 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.670 -7.756 -0.942 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.463 4.463 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.121 3.879 11 C -0.252 4.252 12 C -0.078 4.078 13 C -0.250 4.250 14 C 0.101 3.899 15 N -0.329 5.329 16 C 0.400 3.600 17 O -0.439 6.439 18 N -0.400 5.400 19 C 0.023 3.977 20 C 0.022 3.978 21 H 0.098 0.902 22 C -0.191 4.191 23 C -0.118 4.118 24 C -0.304 4.304 25 C -0.007 4.007 26 O -0.232 6.232 27 C -0.208 4.208 28 H 0.089 0.911 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.237 0.763 33 H 0.232 0.768 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.174 0.826 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 26.975 -6.579 -0.331 27.767 hybrid contribution 0.870 -0.023 -0.465 0.987 sum 27.845 -6.602 -0.796 28.628 Atomic orbital electron populations 1.69648 1.05527 1.28418 1.48284 1.24453 0.95018 0.98819 0.95686 0.86206 0.80553 0.81438 0.78969 1.19908 1.20857 1.18112 1.20777 0.76898 0.96622 1.51956 0.87571 1.83603 1.22537 1.25552 1.80246 1.18851 0.90983 0.85661 0.92361 1.21290 1.01298 0.92241 1.10420 1.20547 0.93360 0.96768 0.97156 1.20317 0.94160 0.96458 1.14023 1.16900 0.80022 0.93887 0.99079 1.42473 1.04946 1.21871 1.63621 1.15921 0.81019 0.83167 0.79844 1.91022 1.72920 1.34919 1.45000 1.44925 1.05362 1.26833 1.62840 1.21259 0.85220 0.90311 1.00893 1.22790 0.93798 0.83795 0.97450 0.90245 1.22209 0.95385 0.98876 1.02668 1.20336 0.95799 0.94182 1.01493 1.22536 0.99666 0.95504 1.12668 1.22018 0.82046 0.98828 0.97800 1.85966 1.22253 1.39027 1.75955 1.20006 0.91945 0.97450 1.11429 0.91125 0.84839 0.86740 0.87202 0.76301 0.76753 0.89354 0.90456 0.89528 0.90091 0.90393 0.91084 0.86215 0.82619 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.96 55.48 0.77 -25.17 16 2 C 0.06 1.83 5.49 -17.52 -0.10 1.73 16 3 Si 0.90 22.58 28.62 -169.99 -4.86 17.72 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.39 -11.23 9.90 30.88 0.31 -10.92 16 8 H 0.11 3.11 5.52 -52.49 -0.29 2.82 16 9 O -0.21 -5.97 8.58 0.01 0.00 -5.97 16 10 C 0.17 4.28 6.64 -39.13 -0.26 4.02 16 11 C -0.23 -5.16 9.13 -39.36 -0.36 -5.52 16 12 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 13 C -0.23 -3.85 9.96 -39.34 -0.39 -4.24 16 14 C 0.19 3.57 6.25 -83.71 -0.52 3.05 16 15 N -0.68 -9.67 5.34 -14.24 -0.08 -9.75 16 16 C 0.70 10.76 8.29 -86.91 -0.72 10.04 16 17 O -0.56 -11.49 14.13 5.29 0.07 -11.42 16 18 N -0.74 -7.93 5.46 -65.22 -0.36 -8.28 16 19 C 0.15 1.43 5.39 -4.04 -0.02 1.40 16 20 C 0.08 0.57 2.94 -26.47 -0.08 0.50 16 21 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 22 C -0.15 -0.98 5.54 -26.34 -0.15 -1.12 16 23 C -0.08 -0.47 6.23 -27.88 -0.17 -0.65 16 24 C -0.28 -1.79 9.97 -36.06 -0.36 -2.15 16 25 C 0.06 0.38 10.88 29.10 0.32 0.70 16 26 O -0.32 -2.67 9.81 -17.09 -0.17 -2.84 16 27 C -0.19 -4.15 8.59 -39.21 -0.34 -4.49 16 28 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.13 3.07 5.71 -52.49 -0.30 2.77 16 30 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.40 3.98 8.84 -40.82 -0.36 3.62 16 33 H 0.40 3.13 8.37 -40.82 -0.34 2.79 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.13 3.00 6.52 -52.48 -0.34 2.66 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -34.61 354.97 -7.93 -42.54 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.42 Total: 6.96 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -3.24 Total: -9.14 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.34 Total: -43.20 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.09 Total: -20.22 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.86 Total: 17.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.61 -7.93 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780733488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.588 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds