Wall clock time and date at job start Tue Mar 31 2020 12:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86796 * 119.99877 * 2 1 4 4 H 1.48492 * 109.47464 * 270.00174 * 3 2 1 5 5 H 1.48499 * 109.46931 * 30.00542 * 3 2 1 6 6 H 1.48498 * 109.46826 * 149.99975 * 3 2 1 7 7 C 1.38648 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 359.97438 * 7 2 1 9 9 O 1.34833 * 119.99767 * 180.02562 * 7 2 1 10 10 C 1.35760 * 116.99976 * 174.61920 * 9 7 2 11 11 C 1.38951 * 120.03166 * 354.07277 * 10 9 7 12 12 C 1.38121 * 120.06788 * 180.27339 * 11 10 9 13 13 C 1.38205 * 120.13778 * 0.02562 * 12 11 10 14 14 C 1.38915 * 120.06702 * 359.97438 * 13 12 11 15 15 N 1.39946 * 120.03380 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99951 * 214.72457 * 15 14 13 17 17 O 1.21580 * 119.99969 * 5.48006 * 16 15 14 18 18 N 1.34778 * 119.99791 * 185.47767 * 16 15 14 19 19 C 1.46499 * 119.99693 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46829 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.69837 * 60.58520 * 20 19 18 22 22 C 1.53503 * 109.70369 * 181.20662 * 20 19 18 23 23 C 1.53243 * 108.16468 * 182.07656 * 22 20 19 24 24 C 1.50440 * 109.44377 * 313.18833 * 23 22 20 25 25 C 1.30682 * 122.49378 * 17.48807 * 24 23 22 26 26 O 1.35129 * 123.34728 * 359.53825 * 25 24 23 27 27 C 1.38731 * 120.03196 * 174.35126 * 10 9 7 28 28 H 0.96995 * 120.00203 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.96476 * 0.27911 * 11 10 9 30 30 H 1.07997 * 119.93294 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.96342 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99895 * 34.72764 * 15 14 13 33 33 H 0.96999 * 119.99932 * 359.97438 * 18 16 15 34 34 H 1.08997 * 109.47445 * 300.00145 * 19 18 16 35 35 H 1.09007 * 109.47024 * 59.99967 * 19 18 16 36 36 H 1.08998 * 109.72998 * 301.75797 * 22 20 19 37 37 H 1.09001 * 109.72571 * 62.43071 * 22 20 19 38 38 H 1.09010 * 109.47162 * 193.19847 * 23 22 20 39 39 H 1.09002 * 109.48108 * 73.18557 * 23 22 20 40 40 H 1.07999 * 118.75282 * 197.51073 * 24 23 22 41 41 H 1.08005 * 118.32357 * 179.56550 * 25 24 23 42 42 H 1.08003 * 120.06859 * 359.74545 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9735 -2.4051 0.1128 11 6 3.2230 -3.5513 0.3445 12 6 3.8497 -4.7762 0.4651 13 6 5.2246 -4.8659 0.3563 14 6 5.9804 -3.7236 0.1248 15 7 7.3726 -3.8151 0.0153 16 6 8.1519 -2.8170 0.4768 17 8 7.6535 -1.8844 1.0768 18 7 9.4837 -2.8528 0.2733 19 6 10.3307 -1.7676 0.7745 20 6 11.7901 -2.0514 0.4130 21 1 11.8957 -2.1097 -0.6703 22 6 12.6862 -0.9324 0.9619 23 6 14.1292 -1.2238 0.5363 24 6 14.4506 -2.6675 0.8113 25 6 13.5243 -3.5667 1.0141 26 8 12.2024 -3.2865 1.0051 27 6 5.3537 -2.4918 0.0028 28 1 -0.4850 0.8400 0.0004 29 1 2.1485 -3.4844 0.4303 30 1 3.2643 -5.6657 0.6455 31 1 5.7117 -5.8251 0.4507 32 1 7.7766 -4.5968 -0.3928 33 1 9.8814 -3.5971 -0.2050 34 1 10.0204 -0.8259 0.3219 35 1 10.2316 -1.7001 1.8579 36 1 12.3687 0.0270 0.5536 37 1 12.6214 -0.9095 2.0498 38 1 14.8102 -0.5861 1.1000 39 1 14.2415 -1.0231 -0.5292 40 1 15.4862 -2.9723 0.8428 41 1 13.8309 -4.5857 1.1986 42 1 5.9391 -1.6022 -0.1769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780733488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:00 Heat of formation + Delta-G solvation = -70.846934 kcal Electronic energy + Delta-G solvation = -25442.719717 eV Core-core repulsion = 21581.468838 eV Total energy + Delta-G solvation = -3861.250879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78309 -41.09569 -40.47759 -38.45149 -36.16487 -35.55505 -34.87963 -34.43138 -32.77156 -31.25066 -30.13441 -28.19733 -27.20442 -25.07579 -24.17096 -23.52326 -22.88415 -21.95357 -20.12432 -19.87484 -19.62785 -19.17364 -17.79294 -17.54335 -17.08178 -16.84059 -16.56505 -16.46735 -16.04193 -15.78524 -15.61121 -15.52145 -14.99483 -14.92223 -14.55664 -14.33659 -14.22886 -14.10543 -13.86917 -13.60428 -13.30241 -13.16378 -12.92943 -12.71033 -12.49910 -12.05948 -11.85622 -11.75906 -11.65877 -11.45202 -11.35442 -11.08087 -10.85337 -10.23612 -9.35668 -9.32904 -8.88228 -8.50463 -6.22054 0.44503 0.66680 1.27986 1.32167 1.38254 1.49968 1.52473 2.03205 2.27602 2.38155 2.76002 2.96086 3.12723 3.31457 3.56779 3.76209 3.92032 4.10831 4.12421 4.25109 4.37288 4.41323 4.42997 4.50405 4.62285 4.65547 4.72378 4.77138 4.82129 4.92865 5.00533 5.16167 5.30594 5.35148 5.38294 5.40301 5.45306 5.64934 5.69560 5.79509 5.91455 5.95496 6.24410 6.63504 6.84587 6.96753 7.46131 7.61193 8.61045 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.002570 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.982583 B =10893.167429 C =12296.988725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.275 1.275 7 C -0.396 4.396 8 H 0.088 0.912 9 O -0.249 6.249 10 C 0.135 3.865 11 C -0.249 4.249 12 C -0.051 4.051 13 C -0.196 4.196 14 C 0.203 3.797 15 N -0.665 5.665 16 C 0.696 3.304 17 O -0.617 6.617 18 N -0.719 5.719 19 C 0.146 3.854 20 C 0.086 3.914 21 H 0.094 0.906 22 C -0.153 4.153 23 C -0.084 4.084 24 C -0.286 4.286 25 C 0.040 3.960 26 O -0.334 6.334 27 C -0.202 4.202 28 H 0.285 0.715 29 H 0.114 0.886 30 H 0.157 0.843 31 H 0.165 0.835 32 H 0.428 0.572 33 H 0.416 0.584 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.176 0.824 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.919 -10.031 -1.324 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.200 1.200 7 C -0.472 4.472 8 H 0.105 0.895 9 O -0.157 6.157 10 C 0.085 3.915 11 C -0.269 4.269 12 C -0.069 4.069 13 C -0.217 4.217 14 C 0.108 3.892 15 N -0.315 5.315 16 C 0.396 3.604 17 O -0.497 6.497 18 N -0.376 5.376 19 C 0.021 3.979 20 C 0.030 3.970 21 H 0.112 0.888 22 C -0.192 4.192 23 C -0.121 4.121 24 C -0.306 4.306 25 C -0.022 4.022 26 O -0.249 6.249 27 C -0.224 4.224 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.174 0.826 31 H 0.182 0.818 32 H 0.267 0.733 33 H 0.254 0.746 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.150 0.850 41 H 0.193 0.807 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 30.315 -8.935 -0.748 31.613 hybrid contribution 0.147 0.386 -0.316 0.520 sum 30.462 -8.548 -1.064 31.657 Atomic orbital electron populations 1.69712 1.06528 1.29475 1.50299 1.25179 0.95863 1.01766 0.95746 0.85322 0.78505 0.78175 0.79347 1.18781 1.18774 1.20012 1.20753 0.77874 0.96307 1.52274 0.89485 1.83545 1.21535 1.27548 1.83056 1.19353 0.92135 0.85586 0.94385 1.21343 1.00502 0.93470 1.11604 1.21011 0.94479 0.96318 0.95098 1.20895 0.93459 0.97891 1.09424 1.17025 0.81994 0.92905 0.97278 1.42243 1.03238 1.22685 1.63313 1.16154 0.82233 0.82530 0.79439 1.91006 1.74205 1.37003 1.47442 1.44751 1.03698 1.27467 1.61686 1.21334 0.86635 0.89993 0.99888 1.22695 0.92048 0.84145 0.98126 0.88823 1.22220 0.95781 0.99075 1.02080 1.20398 0.95308 0.94233 1.02136 1.22771 1.00311 0.95614 1.11871 1.22386 0.81391 0.99986 0.98393 1.85927 1.23344 1.39182 1.76413 1.20052 0.90972 0.98721 1.12632 0.90556 0.86816 0.82589 0.81774 0.73255 0.74649 0.89587 0.92087 0.88534 0.91100 0.89687 0.90250 0.84977 0.80722 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.23 13.96 21.61 0.30 -55.93 16 2 C 0.01 0.79 5.49 84.83 0.47 1.25 16 3 Si 0.96 48.40 28.62 68.60 1.96 50.37 16 4 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -14.45 7.11 99.48 0.71 -13.75 16 7 C -0.40 -24.34 9.90 67.92 0.67 -23.67 16 8 H 0.09 5.48 5.52 -2.91 -0.02 5.47 16 9 O -0.25 -14.70 8.58 -22.88 -0.20 -14.90 16 10 C 0.14 6.89 6.64 22.56 0.15 7.04 16 11 C -0.25 -11.23 9.13 22.41 0.20 -11.03 16 12 C -0.05 -1.69 10.03 22.23 0.22 -1.46 16 13 C -0.20 -5.69 9.96 22.42 0.22 -5.46 16 14 C 0.20 6.96 6.25 38.13 0.24 7.20 16 15 N -0.67 -16.84 5.34 -317.23 -1.70 -18.54 16 16 C 0.70 20.38 8.29 179.05 1.48 21.86 16 17 O -0.62 -25.41 14.13 -3.97 -0.06 -25.47 16 18 N -0.72 -13.91 5.46 -478.53 -2.61 -16.52 16 19 C 0.15 2.67 5.39 86.38 0.47 3.13 16 20 C 0.09 1.11 2.94 30.76 0.09 1.20 16 21 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 22 C -0.15 -1.72 5.54 30.84 0.17 -1.55 16 23 C -0.08 -0.80 6.23 29.85 0.19 -0.61 16 24 C -0.29 -2.94 9.97 25.89 0.26 -2.68 16 25 C 0.04 0.45 10.88 68.11 0.74 1.20 16 26 O -0.33 -4.89 9.81 -84.05 -0.82 -5.72 16 27 C -0.20 -9.13 8.59 22.51 0.19 -8.93 16 28 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 29 H 0.11 5.53 5.71 -2.91 -0.02 5.51 16 30 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.43 6.43 8.84 -92.71 -0.82 5.61 16 33 H 0.42 5.20 8.37 -92.71 -0.78 4.42 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.13 1.00 8.06 -2.91 -0.02 0.97 16 41 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.11 5.27 6.52 -2.91 -0.02 5.25 16 Total: -1.00 -80.87 354.97 2.12 -78.75 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.53 Total: 20.46 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 5.77 Total: -12.51 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -4.00 Total: -90.98 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -1.08 Total: -46.08 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.96 Total: 50.37 kcal Total: -80.87 2.12 -78.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780733488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.899 kcal (2) G-P(sol) polarization free energy of solvation -80.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds