Wall clock time and date at job start Tue Mar 31 2020 13:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 112.78028 * 2 1 4 4 C 1.53751 * 113.46646 * 229.09472 * 2 1 3 5 5 C 1.53499 * 83.26365 * 271.50517 * 4 2 1 6 6 N 1.47073 * 113.46659 * 130.77716 * 2 1 3 7 7 C 1.34769 * 136.05941 * 267.69719 * 6 2 1 8 8 O 1.21363 * 119.99741 * 359.62849 * 7 6 2 9 9 C 1.49356 * 120.00317 * 179.62595 * 7 6 2 10 10 O 1.21377 * 119.99854 * 0.02562 * 9 7 6 11 11 N 1.34769 * 120.00317 * 179.97438 * 9 7 6 12 12 C 1.39717 * 120.00356 * 174.78692 * 11 9 7 13 13 C 1.39026 * 120.04122 * 326.28632 * 12 11 9 14 14 C 1.38135 * 120.06033 * 180.02562 * 13 12 11 15 15 C 1.38182 * 120.14727 * 359.71300 * 14 13 12 16 16 C 1.38914 * 120.08070 * 0.56403 * 15 14 13 17 17 O 1.35759 * 120.03335 * 179.71476 * 16 15 14 18 18 C 1.34830 * 116.99906 * 173.81952 * 17 16 15 19 19 H 1.07996 * 120.00265 * 354.59877 * 18 17 16 20 20 C 1.38655 * 119.99479 * 174.60137 * 18 17 16 21 21 N 1.31550 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99636 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47344 * 89.99948 * 22 20 18 24 24 H 1.48504 * 109.46953 * 210.00005 * 22 20 18 25 25 H 1.48495 * 109.47373 * 329.99768 * 22 20 18 26 26 C 1.38762 * 119.93859 * 359.43847 * 16 15 14 27 27 H 1.08991 * 109.47493 * 308.72672 * 1 2 3 28 28 H 1.09007 * 109.46793 * 68.72829 * 1 2 3 29 29 H 1.09005 * 109.46774 * 188.72030 * 1 2 3 30 30 H 1.08997 * 109.47143 * 171.27852 * 3 2 1 31 31 H 1.09004 * 109.46759 * 291.27437 * 3 2 1 32 32 H 1.08995 * 109.47500 * 51.27112 * 3 2 1 33 33 H 1.09004 * 114.39914 * 157.94472 * 4 2 1 34 34 H 1.09001 * 114.27180 * 25.06130 * 4 2 1 35 35 H 1.09000 * 113.47465 * 218.98886 * 5 4 2 36 36 H 1.08995 * 113.46828 * 88.53559 * 5 4 2 37 37 H 0.97005 * 120.00135 * 354.78461 * 11 9 7 38 38 H 1.07997 * 119.96759 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.92853 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.95720 * 180.27631 * 15 14 13 41 41 H 0.97004 * 119.99970 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.07407 * 180.25585 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1224 1.4106 0.0000 4 6 2.1423 -0.9235 -1.0659 5 6 2.0338 -1.9775 0.0447 6 7 2.1157 -0.8811 1.0216 7 6 2.5366 -0.7451 2.2946 8 8 2.4698 0.3352 2.8437 9 6 3.0852 -1.9238 3.0298 10 8 3.1523 -3.0041 2.4806 11 7 3.5065 -1.7877 4.3027 12 6 3.9176 -2.9099 5.0264 13 6 3.3054 -4.1395 4.8111 14 6 3.7111 -5.2492 5.5267 15 6 4.7300 -5.1425 6.4540 16 6 5.3419 -3.9157 6.6781 17 8 6.3389 -3.8108 7.5936 18 6 6.9762 -2.6252 7.6714 19 1 6.7464 -1.8412 6.9651 20 6 7.9266 -2.4126 8.6583 21 7 8.2062 -3.3674 9.5189 22 14 8.8090 -0.7697 8.7666 23 1 8.0453 0.1450 9.6528 24 1 10.1707 -0.9750 9.3225 25 1 8.9127 -0.1731 7.4108 26 6 4.9371 -2.7987 5.9612 27 1 -0.3634 0.6428 0.8016 28 1 -0.3633 0.3729 -0.9577 29 1 -0.3633 -1.0159 0.1558 30 1 3.1996 1.3523 0.1558 31 1 1.9193 1.8900 -0.9577 32 1 1.6704 1.9946 0.8016 33 1 3.1655 -0.6723 -1.3453 34 1 1.4950 -1.1092 -1.9231 35 1 2.8851 -2.6572 0.0828 36 1 1.0766 -2.4987 0.0565 37 1 3.5245 -0.9105 4.7165 38 1 2.5114 -4.2269 4.0843 39 1 3.2344 -6.2033 5.3575 40 1 5.0478 -6.0131 7.0086 41 1 8.8709 -3.2185 10.2096 42 1 5.4142 -1.8447 6.1307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784869257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:37 Heat of formation + Delta-G solvation = -21.519501 kcal Electronic energy + Delta-G solvation = -26048.914586 eV Core-core repulsion = 22189.802705 eV Total energy + Delta-G solvation = -3859.111881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.36096 -40.12464 -38.77815 -37.92265 -36.51336 -34.35909 -32.26438 -32.04526 -29.87641 -29.52432 -28.70143 -27.88133 -25.52677 -24.94785 -23.37213 -22.22586 -21.87756 -20.44609 -19.10558 -18.03977 -17.74572 -17.22564 -16.62256 -16.27380 -15.61560 -15.42418 -15.36994 -15.06122 -14.49040 -14.35564 -14.13227 -13.87290 -13.67061 -13.51451 -13.04035 -12.97799 -12.83005 -12.51103 -12.40952 -12.21637 -11.98253 -11.87022 -11.72481 -11.65679 -11.56210 -11.07533 -10.98139 -10.79310 -10.66570 -10.44684 -9.93124 -9.57359 -9.37713 -9.10680 -8.83110 -7.82219 -7.23029 -6.47195 -4.06981 1.23875 1.96076 2.18254 2.36205 3.11886 3.13163 3.17803 3.19977 3.31512 3.87684 3.95177 4.29186 4.43561 4.52763 4.53186 4.55325 4.86871 5.01416 5.08018 5.20816 5.22692 5.23843 5.37563 5.44696 5.48657 5.60629 5.62207 5.62504 5.82662 5.90893 5.95957 5.97589 6.14553 6.18990 6.53765 6.79406 6.87107 7.05561 7.22437 7.25477 7.35082 7.40084 7.68090 7.74042 7.96499 8.05182 8.98255 9.66838 10.70587 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.002944 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.729956 B = 9509.540756 C =10695.263273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.155 3.845 3 C -0.148 4.148 4 C -0.150 4.150 5 C 0.104 3.896 6 N -0.615 5.615 7 C 0.538 3.462 8 O -0.518 6.518 9 C 0.507 3.493 10 O -0.498 6.498 11 N -0.638 5.638 12 C 0.175 3.825 13 C -0.204 4.204 14 C -0.062 4.062 15 C -0.196 4.196 16 C 0.168 3.832 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.091 0.909 20 C 0.041 3.959 21 N -0.861 5.861 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.250 4.250 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.418 0.582 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 5.826 -20.065 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.071 3.929 3 C -0.206 4.206 4 C -0.187 4.187 5 C -0.019 4.019 6 N -0.352 5.352 7 C 0.322 3.678 8 O -0.393 6.393 9 C 0.288 3.712 10 O -0.372 6.372 11 N -0.283 5.283 12 C 0.082 3.918 13 C -0.225 4.225 14 C -0.081 4.081 15 C -0.216 4.216 16 C 0.114 3.886 17 O -0.077 6.077 18 C -0.469 4.469 19 H 0.108 0.892 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.764 3.236 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.272 4.272 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.255 0.745 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.526 5.494 -19.574 24.419 hybrid contribution 0.419 1.311 0.401 1.433 sum -13.106 6.804 -19.173 24.201 Atomic orbital electron populations 1.21984 0.92541 1.03121 1.03163 1.22191 0.94218 0.92701 0.83771 1.21926 1.01591 0.94509 1.02592 1.23620 1.02704 0.96116 0.96308 1.23066 1.03552 0.91596 0.83658 1.49650 1.59967 1.15276 1.10303 1.19680 0.79224 0.88732 0.80153 1.90767 1.55165 1.27589 1.65825 1.20004 0.79753 0.88898 0.82552 1.90756 1.52389 1.27293 1.66750 1.43152 1.62000 1.11329 1.11856 1.17398 0.94758 0.86292 0.93354 1.20507 1.04527 0.92033 1.05438 1.20513 0.95675 0.97380 0.94558 1.20286 1.01281 0.96111 1.03878 1.19071 0.88058 0.92510 0.89008 1.84023 1.39725 1.35583 1.48343 1.21291 1.19236 0.90586 1.15816 0.89181 1.25278 0.96954 0.99345 0.94804 1.70033 1.31445 1.32193 1.15899 0.85727 0.78650 0.80168 0.79009 1.19821 1.20205 1.19188 1.20844 1.01500 1.00658 1.04149 0.91539 0.90453 0.91587 0.91845 0.91084 0.91434 0.88398 0.88797 0.88819 0.89282 0.74478 0.86408 0.86430 0.86197 0.91959 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.27 37.16 0.34 -0.63 16 2 C 0.15 1.26 1.60 -136.14 -0.22 1.05 16 3 C -0.15 -1.24 8.73 37.16 0.32 -0.91 16 4 C -0.15 -0.90 7.63 -26.08 -0.20 -1.10 16 5 C 0.10 0.88 7.24 -8.49 -0.06 0.82 16 6 N -0.62 -6.97 3.37 -170.28 -0.57 -7.55 16 7 C 0.54 7.78 8.04 -11.63 -0.09 7.69 16 8 O -0.52 -8.35 16.68 5.49 0.09 -8.25 16 9 C 0.51 8.16 7.62 -11.63 -0.09 8.07 16 10 O -0.50 -8.62 12.91 5.47 0.07 -8.55 16 11 N -0.64 -10.71 5.32 -10.31 -0.05 -10.77 16 12 C 0.17 3.41 6.27 -83.77 -0.52 2.89 16 13 C -0.20 -3.87 8.65 -39.33 -0.34 -4.21 16 14 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 15 C -0.20 -4.14 9.99 -39.35 -0.39 -4.54 16 16 C 0.17 4.06 6.64 -39.14 -0.26 3.80 16 17 O -0.17 -4.92 9.76 0.02 0.00 -4.92 16 18 C -0.39 -10.93 9.44 30.89 0.29 -10.64 16 19 H 0.09 2.33 5.30 -52.49 -0.28 2.05 16 20 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 21 N -0.86 -25.14 13.67 55.48 0.76 -24.38 16 22 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.25 -5.48 9.05 -39.19 -0.35 -5.84 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.42 7.02 -51.93 -0.36 0.05 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.09 0.34 8.11 -51.93 -0.42 -0.08 16 35 H 0.09 0.91 7.39 -51.93 -0.38 0.53 16 36 H 0.09 0.63 7.28 -51.93 -0.38 0.26 16 37 H 0.42 6.35 8.30 -40.82 -0.34 6.01 16 38 H 0.12 2.13 6.44 -52.49 -0.34 1.79 16 39 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 41 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.13 2.87 5.71 -52.49 -0.30 2.57 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -33.06 357.07 -6.73 -39.79 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.32 Total: 7.82 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.07 Total: -4.08 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.13 Total: -42.69 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.16 Total: -21.72 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.06 -6.73 -39.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784869257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.274 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds