Wall clock time and date at job start Tue Mar 31 2020 13:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 112.78028 * 2 1 4 4 C 1.53751 * 113.46646 * 229.09472 * 2 1 3 5 5 C 1.53499 * 83.26365 * 271.50517 * 4 2 1 6 6 N 1.47073 * 113.46659 * 130.77716 * 2 1 3 7 7 C 1.34769 * 136.05941 * 267.69719 * 6 2 1 8 8 O 1.21363 * 119.99741 * 359.62849 * 7 6 2 9 9 C 1.49356 * 120.00317 * 179.62595 * 7 6 2 10 10 O 1.21377 * 119.99854 * 0.02562 * 9 7 6 11 11 N 1.34769 * 120.00317 * 179.97438 * 9 7 6 12 12 C 1.39717 * 120.00356 * 174.78692 * 11 9 7 13 13 C 1.39026 * 120.04122 * 326.28632 * 12 11 9 14 14 C 1.38135 * 120.06033 * 180.02562 * 13 12 11 15 15 C 1.38182 * 120.14727 * 359.71300 * 14 13 12 16 16 C 1.38914 * 120.08070 * 0.56403 * 15 14 13 17 17 O 1.35759 * 120.03335 * 179.71476 * 16 15 14 18 18 C 1.34830 * 116.99906 * 173.81952 * 17 16 15 19 19 H 1.07996 * 120.00265 * 354.59877 * 18 17 16 20 20 C 1.38655 * 119.99479 * 174.60137 * 18 17 16 21 21 N 1.31550 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99636 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47344 * 89.99948 * 22 20 18 24 24 H 1.48504 * 109.46953 * 210.00005 * 22 20 18 25 25 H 1.48495 * 109.47373 * 329.99768 * 22 20 18 26 26 C 1.38762 * 119.93859 * 359.43847 * 16 15 14 27 27 H 1.08991 * 109.47493 * 308.72672 * 1 2 3 28 28 H 1.09007 * 109.46793 * 68.72829 * 1 2 3 29 29 H 1.09005 * 109.46774 * 188.72030 * 1 2 3 30 30 H 1.08997 * 109.47143 * 171.27852 * 3 2 1 31 31 H 1.09004 * 109.46759 * 291.27437 * 3 2 1 32 32 H 1.08995 * 109.47500 * 51.27112 * 3 2 1 33 33 H 1.09004 * 114.39914 * 157.94472 * 4 2 1 34 34 H 1.09001 * 114.27180 * 25.06130 * 4 2 1 35 35 H 1.09000 * 113.47465 * 218.98886 * 5 4 2 36 36 H 1.08995 * 113.46828 * 88.53559 * 5 4 2 37 37 H 0.97005 * 120.00135 * 354.78461 * 11 9 7 38 38 H 1.07997 * 119.96759 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.92853 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.95720 * 180.27631 * 15 14 13 41 41 H 0.97004 * 119.99970 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.07407 * 180.25585 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1224 1.4106 0.0000 4 6 2.1423 -0.9235 -1.0659 5 6 2.0338 -1.9775 0.0447 6 7 2.1157 -0.8811 1.0216 7 6 2.5366 -0.7451 2.2946 8 8 2.4698 0.3352 2.8437 9 6 3.0852 -1.9238 3.0298 10 8 3.1523 -3.0041 2.4806 11 7 3.5065 -1.7877 4.3027 12 6 3.9176 -2.9099 5.0264 13 6 3.3054 -4.1395 4.8111 14 6 3.7111 -5.2492 5.5267 15 6 4.7300 -5.1425 6.4540 16 6 5.3419 -3.9157 6.6781 17 8 6.3389 -3.8108 7.5936 18 6 6.9762 -2.6252 7.6714 19 1 6.7464 -1.8412 6.9651 20 6 7.9266 -2.4126 8.6583 21 7 8.2062 -3.3674 9.5189 22 14 8.8090 -0.7697 8.7666 23 1 8.0453 0.1450 9.6528 24 1 10.1707 -0.9750 9.3225 25 1 8.9127 -0.1731 7.4108 26 6 4.9371 -2.7987 5.9612 27 1 -0.3634 0.6428 0.8016 28 1 -0.3633 0.3729 -0.9577 29 1 -0.3633 -1.0159 0.1558 30 1 3.1996 1.3523 0.1558 31 1 1.9193 1.8900 -0.9577 32 1 1.6704 1.9946 0.8016 33 1 3.1655 -0.6723 -1.3453 34 1 1.4950 -1.1092 -1.9231 35 1 2.8851 -2.6572 0.0828 36 1 1.0766 -2.4987 0.0565 37 1 3.5245 -0.9105 4.7165 38 1 2.5114 -4.2269 4.0843 39 1 3.2344 -6.2033 5.3575 40 1 5.0478 -6.0131 7.0086 41 1 8.8709 -3.2185 10.2096 42 1 5.4142 -1.8447 6.1307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784869257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:36 Heat of formation + Delta-G solvation = -44.050214 kcal Electronic energy + Delta-G solvation = -26049.891591 eV Core-core repulsion = 22189.802705 eV Total energy + Delta-G solvation = -3860.088886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.37268 -41.36526 -40.38093 -39.09443 -38.19325 -35.84687 -34.26652 -32.80511 -31.16905 -30.66790 -30.34566 -28.43639 -27.42694 -26.25333 -24.01255 -23.61019 -23.44758 -21.81367 -20.40383 -19.75312 -19.07951 -18.63246 -17.65142 -17.32008 -16.99570 -16.81925 -16.64076 -16.29853 -15.95080 -15.84063 -15.57685 -15.30334 -14.95803 -14.62332 -14.55790 -14.20828 -13.72341 -13.60748 -13.39193 -13.31118 -13.09660 -13.02549 -12.91008 -12.75183 -12.60866 -12.51885 -12.41138 -12.19768 -12.13393 -11.53700 -11.37494 -11.32452 -10.80401 -10.62235 -9.96563 -9.46195 -8.97355 -8.49642 -6.18345 -0.07274 0.55741 0.66939 1.01274 1.34149 1.42807 1.50851 1.97863 2.15273 2.21906 2.78198 3.04949 3.13064 3.32768 3.44530 3.83767 3.91566 3.92765 4.05203 4.20909 4.25244 4.36252 4.42253 4.54681 4.55036 4.68890 4.70408 4.81229 4.85297 4.91738 4.96577 5.05146 5.07059 5.10780 5.20208 5.24530 5.29340 5.38311 5.58082 5.61320 5.93992 5.98169 6.12363 6.32652 6.49772 6.78208 6.94870 7.72660 8.73044 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.002944 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.729956 B = 9509.540756 C =10695.263273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.145 3.855 3 C -0.147 4.147 4 C -0.127 4.127 5 C 0.094 3.906 6 N -0.617 5.617 7 C 0.535 3.465 8 O -0.545 6.545 9 C 0.508 3.492 10 O -0.510 6.510 11 N -0.638 5.638 12 C 0.178 3.822 13 C -0.194 4.194 14 C -0.047 4.047 15 C -0.206 4.206 16 C 0.135 3.865 17 O -0.222 6.222 18 C -0.415 4.415 19 H 0.099 0.901 20 C -0.018 4.018 21 N -0.916 5.916 22 Si 1.015 2.985 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.256 1.256 26 C -0.257 4.257 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.424 0.576 38 H 0.135 0.865 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.274 0.726 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.863 6.456 -23.445 29.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.063 3.937 3 C -0.205 4.205 4 C -0.164 4.164 5 C -0.027 4.027 6 N -0.353 5.353 7 C 0.318 3.682 8 O -0.424 6.424 9 C 0.290 3.710 10 O -0.384 6.384 11 N -0.285 5.285 12 C 0.084 3.916 13 C -0.214 4.214 14 C -0.065 4.065 15 C -0.225 4.225 16 C 0.084 3.916 17 O -0.128 6.128 18 C -0.491 4.491 19 H 0.116 0.884 20 C -0.216 4.216 21 N -0.554 5.554 22 Si 0.835 3.165 23 H -0.187 1.187 24 H -0.194 1.194 25 H -0.180 1.180 26 C -0.279 4.279 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.150 0.850 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.263 0.737 38 H 0.153 0.847 39 H 0.180 0.820 40 H 0.143 0.857 41 H 0.083 0.917 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.586 6.117 -23.043 28.484 hybrid contribution 0.785 1.007 1.167 1.730 sum -14.801 7.125 -21.876 27.357 Atomic orbital electron populations 1.21996 0.90846 1.03241 1.04291 1.22622 0.95496 0.92507 0.83110 1.21924 1.00171 0.94839 1.03516 1.23601 1.03425 0.93239 0.96157 1.23372 1.04030 0.91615 0.83685 1.50015 1.58277 1.17647 1.09323 1.19318 0.79961 0.87626 0.81256 1.90754 1.56838 1.27995 1.66774 1.20429 0.78947 0.89520 0.82066 1.90732 1.52773 1.27980 1.66932 1.43156 1.62076 1.10936 1.12282 1.17455 0.93813 0.87607 0.92705 1.20861 1.03996 0.91704 1.04855 1.20956 0.94008 0.99111 0.92417 1.20565 1.01920 0.95321 1.04710 1.19600 0.88372 0.94389 0.89245 1.83985 1.41935 1.36212 1.50703 1.21750 1.19917 0.90900 1.16501 0.88397 1.26523 0.97527 1.03500 0.94078 1.70166 1.33052 1.34868 1.17291 0.84632 0.77360 0.74979 0.79554 1.18705 1.19404 1.18000 1.20843 1.02320 0.99935 1.04785 0.93188 0.87385 0.91138 0.93666 0.88051 0.93392 0.88354 0.85003 0.90219 0.87317 0.73738 0.84696 0.82041 0.85699 0.91699 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.27 71.98 0.67 -0.75 16 2 C 0.14 1.97 1.60 0.50 0.00 1.97 16 3 C -0.15 -2.19 8.73 71.98 0.63 -1.56 16 4 C -0.13 -1.03 7.63 31.01 0.24 -0.80 16 5 C 0.09 1.34 7.24 83.19 0.60 1.94 16 6 N -0.62 -12.92 3.37 -811.01 -2.73 -15.65 16 7 C 0.54 15.13 8.04 87.24 0.70 15.83 16 8 O -0.55 -17.62 16.68 -3.29 -0.05 -17.67 16 9 C 0.51 15.91 7.62 87.24 0.66 16.58 16 10 O -0.51 -16.84 12.91 -3.33 -0.04 -16.89 16 11 N -0.64 -21.22 5.32 -304.89 -1.62 -22.84 16 12 C 0.18 6.86 6.27 38.20 0.24 7.10 16 13 C -0.19 -6.93 8.65 22.43 0.19 -6.73 16 14 C -0.05 -1.61 10.03 22.23 0.22 -1.39 16 15 C -0.21 -8.71 9.99 22.42 0.22 -8.48 16 16 C 0.14 6.77 6.64 22.56 0.15 6.92 16 17 O -0.22 -13.30 9.76 -22.84 -0.22 -13.52 16 18 C -0.41 -24.16 9.44 67.92 0.64 -23.52 16 19 H 0.10 5.29 5.30 -2.91 -0.02 5.27 16 20 C -0.02 -1.03 5.49 84.83 0.47 -0.56 16 21 N -0.92 -55.96 13.67 21.61 0.30 -55.66 16 22 Si 1.02 43.11 29.55 68.60 2.03 45.14 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 26 C -0.26 -11.57 9.05 22.52 0.20 -11.37 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.07 0.64 7.02 -2.38 -0.02 0.62 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.85 8.13 -2.39 -0.02 0.83 16 34 H 0.13 0.19 8.11 -2.39 -0.02 0.17 16 35 H 0.08 1.39 7.39 -2.39 -0.02 1.37 16 36 H 0.11 1.15 7.28 -2.39 -0.02 1.14 16 37 H 0.42 13.02 8.30 -92.70 -0.77 12.25 16 38 H 0.14 4.45 6.44 -2.91 -0.02 4.43 16 39 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.13 5.08 8.06 -2.91 -0.02 5.05 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.13 5.68 5.71 -2.91 -0.02 5.67 16 Total: -1.00 -76.28 357.07 3.79 -72.50 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.30 Total: 29.41 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 5.84 Total: -4.81 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -4.06 Total: -94.16 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -0.32 Total: -48.08 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -76.28 3.79 -72.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784869257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.448 kcal (2) G-P(sol) polarization free energy of solvation -76.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds