Wall clock time and date at job start Tue Mar 31 2020 13:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 113.28235 * 2 1 4 4 C 1.53490 * 114.20389 * 133.06717 * 2 1 3 5 5 N 1.47064 * 87.98450 * 139.65835 * 4 2 1 6 6 C 1.34779 * 136.06179 * 152.84761 * 5 4 2 7 7 O 1.21361 * 119.99682 * 359.97438 * 6 5 4 8 8 C 1.49358 * 120.00162 * 179.97438 * 6 5 4 9 9 O 1.21375 * 120.00069 * 359.97438 * 8 6 5 10 10 N 1.34778 * 119.99747 * 179.97438 * 8 6 5 11 11 C 1.39719 * 119.99782 * 174.78736 * 10 8 6 12 12 C 1.39027 * 120.04166 * 326.26824 * 11 10 8 13 13 C 1.38138 * 120.05811 * 180.02562 * 12 11 10 14 14 C 1.38183 * 120.15049 * 359.72318 * 13 12 11 15 15 C 1.38920 * 120.07462 * 0.55129 * 14 13 12 16 16 O 1.35752 * 120.02784 * 179.72503 * 15 14 13 17 17 C 1.34838 * 117.00229 * 173.81768 * 16 15 14 18 18 H 1.08005 * 119.99762 * 354.59344 * 17 16 15 19 19 C 1.38644 * 120.00200 * 174.59893 * 17 16 15 20 20 N 1.31560 * 120.00326 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00206 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46731 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47379 * 119.99401 * 21 19 17 24 24 H 1.48500 * 109.47301 * 240.00199 * 21 19 17 25 25 C 1.38754 * 119.94265 * 359.44704 * 15 14 13 26 26 C 1.47067 * 87.88604 * 333.09908 * 5 4 2 27 27 H 1.09002 * 109.47071 * 286.93730 * 1 2 3 28 28 H 1.09000 * 109.46947 * 46.92975 * 1 2 3 29 29 H 1.08997 * 109.47278 * 166.93439 * 1 2 3 30 30 H 1.08994 * 109.47014 * 193.06780 * 3 2 1 31 31 H 1.09007 * 109.46717 * 313.06858 * 3 2 1 32 32 H 1.09002 * 109.46794 * 73.06588 * 3 2 1 33 33 H 1.08997 * 113.47412 * 24.87223 * 4 2 1 34 34 H 1.09007 * 113.51774 * 254.44104 * 4 2 1 35 35 H 0.96996 * 120.00019 * 354.78470 * 10 8 6 36 36 H 1.07998 * 119.96976 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.92589 * 180.02562 * 13 12 11 38 38 H 1.07995 * 119.96508 * 180.30006 * 14 13 12 39 39 H 0.96995 * 120.00317 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.07803 * 180.29394 * 25 15 14 41 41 H 1.08994 * 113.47157 * 141.68148 * 26 5 4 42 42 H 1.09005 * 113.46455 * 272.12866 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1348 1.4054 0.0000 4 6 2.1593 -0.9560 1.0228 5 7 3.1599 -1.3052 0.0031 6 6 4.4335 -1.7462 0.0041 7 8 5.0071 -1.9416 1.0556 8 6 5.1388 -1.9946 -1.2888 9 8 4.5649 -1.7997 -2.3404 10 7 6.4126 -2.4351 -1.2878 11 6 7.0365 -2.7713 -2.4919 12 6 6.2955 -3.3289 -3.5277 13 6 6.9121 -3.6619 -4.7181 14 6 8.2652 -3.4370 -4.8856 15 6 9.0123 -2.8855 -3.8524 16 8 10.3427 -2.6701 -4.0160 17 6 10.9832 -2.0162 -3.0260 18 1 10.4237 -1.6132 -2.1947 19 6 12.3601 -1.8610 -3.0751 20 7 13.0417 -2.3523 -4.0875 21 14 13.2475 -0.9545 -1.7039 22 1 12.2610 -0.5024 -0.6902 23 1 14.2323 -1.8642 -1.0655 24 1 13.9543 0.2243 -2.2662 25 6 8.3966 -2.5496 -2.6552 26 6 2.1613 -0.9553 -1.0183 27 1 -0.3633 0.2994 0.9831 28 1 -0.3633 0.7018 -0.7507 29 1 -0.3634 -1.0010 -0.2323 30 1 3.1979 1.3435 -0.2323 31 1 1.6337 2.0165 -0.7508 32 1 2.0035 1.8575 0.9831 33 1 1.5101 -1.7875 1.2966 34 1 2.5822 -0.4484 1.8898 35 1 6.8961 -2.5187 -0.4511 36 1 5.2371 -3.5026 -3.4013 37 1 6.3344 -4.0946 -5.5216 38 1 8.7432 -3.6940 -5.8193 39 1 14.0050 -2.2441 -4.1217 40 1 8.9745 -2.1163 -1.8523 41 1 2.5855 -0.4464 -1.8838 42 1 1.5124 -1.7868 -1.2937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789812433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:25 Heat of formation + Delta-G solvation = -23.462518 kcal Electronic energy + Delta-G solvation = -25862.795267 eV Core-core repulsion = 22003.599130 eV Total energy + Delta-G solvation = -3859.196137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.33378 -40.14281 -38.82391 -38.03717 -36.52172 -34.40371 -32.82725 -32.26663 -29.57497 -28.80092 -27.96568 -27.71667 -26.49626 -25.39527 -24.17038 -21.90354 -21.28907 -19.85267 -19.07455 -18.27878 -18.02310 -17.23816 -16.89979 -16.42329 -15.60197 -15.37750 -15.30538 -15.03084 -14.53926 -14.42730 -14.19008 -14.04936 -13.66749 -13.55903 -13.42801 -13.04187 -12.75473 -12.46287 -12.41163 -12.18578 -11.99937 -11.81608 -11.69163 -11.60949 -11.45513 -11.09776 -10.97276 -10.77799 -10.66419 -10.43810 -9.95187 -9.58055 -9.41506 -9.14177 -8.83832 -7.83016 -7.23596 -6.47608 -4.07404 1.20795 1.96268 2.17171 2.35237 3.10869 3.13091 3.18001 3.18503 3.30150 3.71084 3.94715 4.23789 4.37492 4.45984 4.53438 4.69459 4.96035 5.07608 5.12052 5.13739 5.22175 5.24460 5.31862 5.43186 5.48800 5.53321 5.56726 5.61631 5.72244 5.90302 5.91887 5.96592 6.13737 6.18258 6.53048 6.77881 6.86263 7.05118 7.18690 7.22197 7.33471 7.38487 7.65751 7.71867 7.96023 8.03125 8.97936 9.66445 10.70215 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.002823 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.183727 B = 9917.479932 C =10884.447436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C -0.126 4.126 4 C 0.113 3.887 5 N -0.621 5.621 6 C 0.538 3.462 7 O -0.520 6.520 8 C 0.508 3.492 9 O -0.497 6.497 10 N -0.637 5.637 11 C 0.174 3.826 12 C -0.204 4.204 13 C -0.062 4.062 14 C -0.196 4.196 15 C 0.168 3.832 16 O -0.174 6.174 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.276 1.276 25 C -0.250 4.250 26 C 0.112 3.888 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.418 0.582 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.270 0.730 40 H 0.133 0.867 41 H 0.093 0.907 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.373 3.898 8.351 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 C -0.184 4.184 4 C -0.009 4.009 5 N -0.356 5.356 6 C 0.323 3.677 7 O -0.395 6.395 8 C 0.289 3.711 9 O -0.371 6.371 10 N -0.283 5.283 11 C 0.082 3.918 12 C -0.225 4.225 13 C -0.081 4.081 14 C -0.215 4.215 15 C 0.113 3.887 16 O -0.077 6.077 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.495 5.495 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.271 4.271 26 C -0.010 4.010 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.255 0.745 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.112 0.888 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.843 3.781 7.943 24.478 hybrid contribution 0.763 0.301 1.215 1.466 sum -22.079 4.082 9.158 24.249 Atomic orbital electron populations 1.21643 0.92164 1.02588 1.02646 1.22250 0.96254 0.95460 0.96785 1.21537 1.01041 0.93360 1.02419 1.23263 0.87374 0.96893 0.93413 1.49166 1.09733 1.63906 1.12813 1.19667 0.80893 0.77645 0.89542 1.90782 1.65301 1.50476 1.32984 1.19924 0.82888 0.79020 0.89265 1.90760 1.65609 1.48502 1.32206 1.43146 1.12416 1.62529 1.10205 1.17394 0.91558 0.97440 0.85420 1.20511 0.99674 1.07773 0.94538 1.20516 0.93466 0.97878 0.96264 1.20289 0.93555 1.08625 0.99052 1.19071 0.85515 0.92135 0.91933 1.84024 1.14624 1.65934 1.43112 1.21339 0.90256 1.32970 1.02301 0.89123 1.25282 0.95448 0.97489 0.98202 1.70042 1.07928 1.42456 1.29122 0.85658 0.79432 0.78820 0.79604 1.19091 1.20089 1.20104 1.20846 0.93410 1.12523 1.00349 1.23280 0.87465 0.96770 0.93521 0.91761 0.91610 0.91935 0.92155 0.91560 0.91823 0.89137 0.89929 0.74453 0.86392 0.86418 0.86187 0.92009 0.84988 0.88823 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.55 9.30 37.16 0.35 -0.20 16 2 C -0.11 -0.69 1.53 -154.13 -0.24 -0.92 16 3 C -0.13 -0.86 9.22 37.16 0.34 -0.51 16 4 C 0.11 0.89 7.78 -8.51 -0.07 0.82 16 5 N -0.62 -7.02 3.50 -185.89 -0.65 -7.67 16 6 C 0.54 7.81 8.14 -11.63 -0.09 7.71 16 7 O -0.52 -8.54 17.26 5.49 0.09 -8.44 16 8 C 0.51 8.14 7.62 -11.63 -0.09 8.05 16 9 O -0.50 -8.56 12.91 5.48 0.07 -8.48 16 10 N -0.64 -10.67 5.32 -10.31 -0.05 -10.73 16 11 C 0.17 3.39 6.27 -83.77 -0.52 2.87 16 12 C -0.20 -3.85 8.65 -39.33 -0.34 -4.19 16 13 C -0.06 -1.15 10.03 -39.64 -0.40 -1.54 16 14 C -0.20 -4.12 9.99 -39.35 -0.39 -4.52 16 15 C 0.17 4.05 6.64 -39.14 -0.26 3.79 16 16 O -0.17 -4.91 9.76 0.02 0.00 -4.91 16 17 C -0.39 -10.89 9.44 30.88 0.29 -10.60 16 18 H 0.09 2.34 5.30 -52.48 -0.28 2.06 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 21 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.25 -5.46 9.05 -39.19 -0.35 -5.82 16 26 C 0.11 0.98 6.70 -8.64 -0.06 0.92 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.25 8.13 -51.93 -0.42 -0.17 16 29 H 0.06 0.23 7.90 -51.93 -0.41 -0.18 16 30 H 0.06 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.08 0.66 8.12 -51.92 -0.42 0.24 16 35 H 0.42 6.34 8.30 -40.82 -0.34 6.01 16 36 H 0.12 2.12 6.44 -52.49 -0.34 1.78 16 37 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 38 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.13 2.87 5.71 -52.48 -0.30 2.57 16 41 H 0.09 0.94 7.37 -51.93 -0.38 0.56 16 42 H 0.09 0.66 7.94 -51.93 -0.41 0.25 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -32.98 359.22 -6.71 -39.68 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.38 Total: 7.10 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.93 Total: -3.13 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.05 Total: -42.73 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.17 Total: -21.84 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.98 -6.71 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789812433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.222 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds