Wall clock time and date at job start Tue Mar 31 2020 13:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 113.28235 * 2 1 4 4 C 1.53490 * 114.20389 * 133.06717 * 2 1 3 5 5 N 1.47064 * 87.98450 * 139.65835 * 4 2 1 6 6 C 1.34779 * 136.06179 * 152.84761 * 5 4 2 7 7 O 1.21361 * 119.99682 * 359.97438 * 6 5 4 8 8 C 1.49358 * 120.00162 * 179.97438 * 6 5 4 9 9 O 1.21375 * 120.00069 * 359.97438 * 8 6 5 10 10 N 1.34778 * 119.99747 * 179.97438 * 8 6 5 11 11 C 1.39719 * 119.99782 * 174.78736 * 10 8 6 12 12 C 1.39027 * 120.04166 * 326.26824 * 11 10 8 13 13 C 1.38138 * 120.05811 * 180.02562 * 12 11 10 14 14 C 1.38183 * 120.15049 * 359.72318 * 13 12 11 15 15 C 1.38920 * 120.07462 * 0.55129 * 14 13 12 16 16 O 1.35752 * 120.02784 * 179.72503 * 15 14 13 17 17 C 1.34838 * 117.00229 * 173.81768 * 16 15 14 18 18 H 1.08005 * 119.99762 * 354.59344 * 17 16 15 19 19 C 1.38644 * 120.00200 * 174.59893 * 17 16 15 20 20 N 1.31560 * 120.00326 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00206 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46731 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47379 * 119.99401 * 21 19 17 24 24 H 1.48500 * 109.47301 * 240.00199 * 21 19 17 25 25 C 1.38754 * 119.94265 * 359.44704 * 15 14 13 26 26 C 1.47067 * 87.88604 * 333.09908 * 5 4 2 27 27 H 1.09002 * 109.47071 * 286.93730 * 1 2 3 28 28 H 1.09000 * 109.46947 * 46.92975 * 1 2 3 29 29 H 1.08997 * 109.47278 * 166.93439 * 1 2 3 30 30 H 1.08994 * 109.47014 * 193.06780 * 3 2 1 31 31 H 1.09007 * 109.46717 * 313.06858 * 3 2 1 32 32 H 1.09002 * 109.46794 * 73.06588 * 3 2 1 33 33 H 1.08997 * 113.47412 * 24.87223 * 4 2 1 34 34 H 1.09007 * 113.51774 * 254.44104 * 4 2 1 35 35 H 0.96996 * 120.00019 * 354.78470 * 10 8 6 36 36 H 1.07998 * 119.96976 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.92589 * 180.02562 * 13 12 11 38 38 H 1.07995 * 119.96508 * 180.30006 * 14 13 12 39 39 H 0.96995 * 120.00317 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.07803 * 180.29394 * 25 15 14 41 41 H 1.08994 * 113.47157 * 141.68148 * 26 5 4 42 42 H 1.09005 * 113.46455 * 272.12866 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1348 1.4054 0.0000 4 6 2.1593 -0.9560 1.0228 5 7 3.1599 -1.3052 0.0031 6 6 4.4335 -1.7462 0.0041 7 8 5.0071 -1.9416 1.0556 8 6 5.1388 -1.9946 -1.2888 9 8 4.5649 -1.7997 -2.3404 10 7 6.4126 -2.4351 -1.2878 11 6 7.0365 -2.7713 -2.4919 12 6 6.2955 -3.3289 -3.5277 13 6 6.9121 -3.6619 -4.7181 14 6 8.2652 -3.4370 -4.8856 15 6 9.0123 -2.8855 -3.8524 16 8 10.3427 -2.6701 -4.0160 17 6 10.9832 -2.0162 -3.0260 18 1 10.4237 -1.6132 -2.1947 19 6 12.3601 -1.8610 -3.0751 20 7 13.0417 -2.3523 -4.0875 21 14 13.2475 -0.9545 -1.7039 22 1 12.2610 -0.5024 -0.6902 23 1 14.2323 -1.8642 -1.0655 24 1 13.9543 0.2243 -2.2662 25 6 8.3966 -2.5496 -2.6552 26 6 2.1613 -0.9553 -1.0183 27 1 -0.3633 0.2994 0.9831 28 1 -0.3633 0.7018 -0.7507 29 1 -0.3634 -1.0010 -0.2323 30 1 3.1979 1.3435 -0.2323 31 1 1.6337 2.0165 -0.7508 32 1 2.0035 1.8575 0.9831 33 1 1.5101 -1.7875 1.2966 34 1 2.5822 -0.4484 1.8898 35 1 6.8961 -2.5187 -0.4511 36 1 5.2371 -3.5026 -3.4013 37 1 6.3344 -4.0946 -5.5216 38 1 8.7432 -3.6940 -5.8193 39 1 14.0050 -2.2441 -4.1217 40 1 8.9745 -2.1163 -1.8523 41 1 2.5855 -0.4464 -1.8838 42 1 1.5124 -1.7868 -1.2937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789812433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:24 Heat of formation + Delta-G solvation = -45.729633 kcal Electronic energy + Delta-G solvation = -25863.760841 eV Core-core repulsion = 22003.599130 eV Total energy + Delta-G solvation = -3860.161711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36864 -41.35445 -40.40003 -39.24005 -38.19648 -35.87487 -34.26489 -33.56509 -31.17909 -30.44956 -28.79470 -28.26742 -27.37008 -27.18107 -25.41103 -23.58748 -22.73326 -21.17304 -19.92243 -19.72657 -19.39890 -18.79896 -18.06162 -17.43432 -17.07395 -16.83151 -16.64498 -16.27661 -15.92302 -15.81099 -15.54592 -15.25258 -14.99131 -14.67454 -14.60076 -14.28175 -14.16590 -13.61046 -13.43102 -13.25521 -13.04613 -13.00434 -12.78424 -12.71194 -12.66030 -12.44764 -12.21995 -12.11708 -12.02537 -11.54311 -11.37238 -11.26395 -10.81761 -10.66533 -10.01680 -9.46324 -8.97371 -8.49537 -6.18190 -0.09822 0.54972 0.66477 0.99033 1.34422 1.42017 1.51915 1.94582 2.15111 2.20222 2.78261 3.00587 3.12064 3.17371 3.44628 3.75509 3.89575 4.05270 4.20911 4.24296 4.26411 4.36167 4.49186 4.52043 4.54893 4.55848 4.72439 4.81574 4.83754 4.96703 5.01393 5.07483 5.08054 5.12009 5.23430 5.28627 5.30748 5.48077 5.58131 5.61491 5.92133 5.98477 6.11918 6.24305 6.45805 6.73728 6.95092 7.72877 8.73313 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.002823 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.183727 B = 9917.479932 C =10884.447436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.108 3.892 5 N -0.621 5.621 6 C 0.537 3.463 7 O -0.548 6.548 8 C 0.510 3.490 9 O -0.508 6.508 10 N -0.637 5.637 11 C 0.178 3.822 12 C -0.193 4.193 13 C -0.047 4.047 14 C -0.205 4.205 15 C 0.135 3.865 16 O -0.222 6.222 17 C -0.413 4.413 18 H 0.099 0.901 19 C -0.019 4.019 20 N -0.916 5.916 21 Si 1.016 2.984 22 H -0.254 1.254 23 H -0.267 1.267 24 H -0.268 1.268 25 C -0.257 4.257 26 C 0.104 3.896 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.425 0.575 36 H 0.136 0.864 37 H 0.162 0.838 38 H 0.125 0.875 39 H 0.274 0.726 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.911 4.353 9.609 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 C -0.186 4.186 4 C -0.013 4.013 5 N -0.355 5.355 6 C 0.320 3.680 7 O -0.427 6.427 8 C 0.292 3.708 9 O -0.383 6.383 10 N -0.284 5.284 11 C 0.084 3.916 12 C -0.214 4.214 13 C -0.065 4.065 14 C -0.225 4.225 15 C 0.084 3.916 16 O -0.129 6.129 17 C -0.489 4.489 18 H 0.116 0.884 19 C -0.217 4.217 20 N -0.554 5.554 21 Si 0.835 3.165 22 H -0.178 1.178 23 H -0.192 1.192 24 H -0.193 1.193 25 C -0.278 4.278 26 C -0.017 4.017 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.263 0.737 36 H 0.153 0.847 37 H 0.180 0.820 38 H 0.143 0.857 39 H 0.083 0.917 40 H 0.143 0.857 41 H 0.096 0.904 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -26.488 4.247 9.209 28.363 hybrid contribution 1.471 0.132 0.775 1.668 sum -25.017 4.379 9.984 27.289 Atomic orbital electron populations 1.21639 0.89629 1.03541 1.03681 1.22180 0.97859 0.94301 0.94600 1.21570 0.99424 0.94105 1.03468 1.23624 0.86480 0.98107 0.93095 1.49422 1.09151 1.61519 1.15375 1.19270 0.82038 0.78425 0.88227 1.90768 1.66248 1.52415 1.33228 1.20310 0.82359 0.78093 0.90041 1.90739 1.65803 1.48864 1.32886 1.43142 1.12925 1.62720 1.09597 1.17445 0.90788 0.96666 0.86668 1.20868 1.00397 1.05917 0.94213 1.20959 0.92320 0.96060 0.97158 1.20568 0.94698 1.08529 0.98675 1.19601 0.84734 0.93565 0.93732 1.83986 1.16628 1.68034 1.44206 1.21787 0.90998 1.33567 1.02583 0.88372 1.26525 0.95952 0.98299 1.00914 1.70173 1.08396 1.45062 1.31745 0.84569 0.78100 0.77519 0.76287 1.17766 1.19178 1.19289 1.20841 0.94546 1.12786 0.99663 1.23582 0.86946 0.98058 0.93135 0.90525 0.90957 0.90912 0.94893 0.90405 0.90697 0.86671 0.90104 0.73687 0.84651 0.82037 0.85701 0.91717 0.85676 0.90398 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.55 9.30 71.98 0.67 0.12 16 2 C -0.09 -0.89 1.53 -51.93 -0.08 -0.97 16 3 C -0.13 -1.49 9.22 71.98 0.66 -0.83 16 4 C 0.11 1.40 7.78 83.18 0.65 2.05 16 5 N -0.62 -12.94 3.50 -860.40 -3.01 -15.96 16 6 C 0.54 15.08 8.14 87.24 0.71 15.79 16 7 O -0.55 -17.73 17.26 -3.28 -0.06 -17.79 16 8 C 0.51 15.84 7.62 87.24 0.66 16.51 16 9 O -0.51 -16.71 12.91 -3.32 -0.04 -16.75 16 10 N -0.64 -21.02 5.32 -304.88 -1.62 -22.64 16 11 C 0.18 6.82 6.27 38.20 0.24 7.06 16 12 C -0.19 -6.87 8.65 22.44 0.19 -6.68 16 13 C -0.05 -1.60 10.03 22.23 0.22 -1.38 16 14 C -0.21 -8.65 9.99 22.42 0.22 -8.42 16 15 C 0.14 6.73 6.64 22.56 0.15 6.88 16 16 O -0.22 -13.27 9.76 -22.85 -0.22 -13.49 16 17 C -0.41 -24.00 9.44 67.92 0.64 -23.36 16 18 H 0.10 5.29 5.30 -2.91 -0.02 5.28 16 19 C -0.02 -1.06 5.49 84.83 0.47 -0.60 16 20 N -0.92 -55.83 13.67 21.61 0.30 -55.54 16 21 Si 1.02 43.06 29.55 68.60 2.03 45.08 16 22 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 C -0.26 -11.49 9.05 22.52 0.20 -11.29 16 26 C 0.10 1.57 6.70 83.09 0.56 2.13 16 27 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.07 0.27 8.13 -2.39 -0.02 0.25 16 29 H 0.07 0.21 7.90 -2.39 -0.02 0.19 16 30 H 0.03 0.56 7.93 -2.39 -0.02 0.54 16 31 H 0.08 0.72 8.13 -2.38 -0.02 0.70 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.12 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.08 1.12 8.12 -2.38 -0.02 1.10 16 35 H 0.42 12.89 8.30 -92.71 -0.77 12.12 16 36 H 0.14 4.42 6.44 -2.91 -0.02 4.41 16 37 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.13 5.67 5.71 -2.91 -0.02 5.65 16 41 H 0.08 1.45 7.37 -2.39 -0.02 1.43 16 42 H 0.11 1.25 7.94 -2.38 -0.02 1.23 16 Total: -1.00 -75.19 359.22 3.83 -71.36 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.29 Total: 28.72 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 6.17 Total: -2.99 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -4.34 Total: -94.13 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.32 Total: -48.04 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -75.19 3.83 -71.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789812433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.629 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds