Wall clock time and date at job start Tue Mar 31 2020 12:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48500 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47034 * 299.99409 * 3 2 1 6 6 H 1.48502 * 109.47204 * 59.99234 * 3 2 1 7 7 C 1.37872 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46934 * 180.02562 * 10 9 7 12 12 O 1.45208 * 109.46926 * 180.02562 * 11 10 9 13 13 C 1.34663 * 116.99778 * 180.02562 * 12 11 10 14 14 O 1.21432 * 120.00268 * 359.97438 * 13 12 11 15 15 C 1.48062 * 120.00177 * 180.02562 * 13 12 11 16 16 C 1.40025 * 120.88752 * 359.97438 * 15 13 12 17 17 C 1.38000 * 119.14668 * 179.72919 * 16 15 13 18 18 N 1.31869 * 120.99885 * 359.97438 * 17 16 15 19 19 C 1.32269 * 121.97549 * 0.02562 * 18 17 16 20 20 N 1.39428 * 119.63855 * 180.02562 * 19 18 17 21 21 C 1.34776 * 119.99329 * 354.88739 * 20 19 18 22 22 O 1.21274 * 120.00718 * 5.09073 * 21 20 19 23 23 C 1.50706 * 119.99509 * 185.09052 * 21 20 19 24 24 C 1.53006 * 117.49620 * 248.75025 * 23 21 20 25 25 C 1.52997 * 117.49600 * 180.09244 * 23 21 20 26 26 C 1.39018 * 120.73091 * 359.97438 * 19 18 17 27 27 H 0.96995 * 120.00205 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47139 * 60.00243 * 9 7 2 29 29 H 1.09001 * 109.47440 * 299.99906 * 9 7 2 30 30 H 1.08997 * 109.46965 * 60.00183 * 10 9 7 31 31 H 1.09001 * 109.47013 * 300.00215 * 10 9 7 32 32 H 1.08997 * 109.47274 * 60.00215 * 11 10 9 33 33 H 1.09001 * 109.47317 * 299.99871 * 11 10 9 34 34 H 1.08000 * 120.42347 * 359.70903 * 16 15 13 35 35 H 1.08002 * 119.49684 * 179.97438 * 17 16 15 36 36 H 0.96998 * 120.00065 * 174.89235 * 20 19 18 37 37 H 1.08997 * 115.55136 * 34.41656 * 23 21 20 38 38 H 1.08996 * 117.49775 * 359.97438 * 24 23 21 39 39 H 1.08999 * 117.49788 * 145.02368 * 24 23 21 40 40 H 1.08998 * 117.49513 * 214.97777 * 25 23 21 41 41 H 1.08999 * 117.50358 * 359.97309 * 25 23 21 42 42 H 1.08001 * 120.53300 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 -0.0001 12 8 2.4241 -6.0907 0.0005 13 6 1.9094 -7.3351 -0.0005 14 8 0.7056 -7.4942 -0.0014 15 6 2.8113 -8.5093 0.0006 16 6 4.2022 -8.3474 0.0022 17 6 5.0091 -9.4668 0.0089 18 7 4.4893 -10.6787 0.0143 19 6 3.1821 -10.8802 0.0131 20 7 2.6852 -12.1829 0.0196 21 6 3.5316 -13.2273 -0.0770 22 8 4.7296 -13.0392 -0.0765 23 6 2.9891 -14.6292 -0.1856 24 6 3.2095 -15.5661 1.0038 25 6 4.0009 -15.7720 -0.2902 26 6 2.2980 -9.8074 0.0065 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6042 0.8905 31 1 2.8721 -3.6042 -0.8894 32 1 0.8541 -5.0446 -0.8903 33 1 0.8535 -5.0451 0.8897 34 1 4.6377 -7.3591 -0.0021 35 1 6.0827 -9.3485 0.0097 36 1 1.7305 -12.3375 0.0935 37 1 2.0561 -14.7306 -0.7400 38 1 3.7472 -15.1686 1.8646 39 1 2.4217 -16.2841 1.2316 40 1 3.7334 -16.6255 -0.9132 41 1 5.0589 -15.5100 -0.2809 42 1 1.2312 -9.9756 0.0060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797026991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:14 Heat of formation + Delta-G solvation = -56.422787 kcal Electronic energy + Delta-G solvation = -24481.147645 eV Core-core repulsion = 20620.522244 eV Total energy + Delta-G solvation = -3860.625401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.34946 -40.37027 -39.42780 -36.75215 -36.56673 -35.29539 -34.05623 -32.98243 -31.70250 -30.60542 -27.37570 -25.95725 -25.13120 -23.38345 -23.12980 -22.92921 -21.41639 -20.47499 -20.17469 -18.77766 -17.97582 -17.34702 -16.74293 -16.44509 -16.26616 -16.00583 -15.73940 -15.45780 -15.15891 -14.91819 -14.49413 -14.37840 -14.24229 -13.74414 -13.32499 -13.08010 -12.42954 -12.25571 -12.21575 -12.07903 -11.91300 -11.29397 -11.15827 -11.03035 -11.01753 -10.87541 -10.70340 -10.60896 -10.51492 -10.48766 -10.22628 -9.78157 -9.59986 -9.47851 -9.18515 -8.70120 -8.41881 -6.06467 -4.09610 0.34306 0.68495 2.04752 2.22836 2.52504 2.67866 3.28408 3.29865 3.36053 3.40217 3.58705 3.83267 4.21219 4.32536 4.34331 4.38029 4.46299 4.51115 4.58926 4.66318 4.88080 5.08079 5.21119 5.25958 5.29761 5.38439 5.41947 5.49954 5.52761 5.60975 5.75821 5.78331 5.93596 6.28154 6.33831 6.48003 6.69415 6.72971 6.92375 7.53596 7.56541 7.66806 7.70844 7.84431 7.91671 8.32330 8.96829 9.55052 11.04956 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.047102 B = 0.001728 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.306508 B =16195.389771 C =16699.081917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.348 6.348 13 C 0.505 3.495 14 O -0.500 6.500 15 C -0.044 4.044 16 C -0.146 4.146 17 C 0.126 3.874 18 N -0.459 5.459 19 C 0.352 3.648 20 N -0.657 5.657 21 C 0.534 3.466 22 O -0.470 6.470 23 C -0.197 4.197 24 C -0.152 4.152 25 C -0.145 4.145 26 C -0.147 4.147 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.420 0.580 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.605 -31.078 0.314 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.264 6.264 13 C 0.348 3.652 14 O -0.388 6.388 15 C -0.053 4.053 16 C -0.168 4.168 17 C -0.031 4.031 18 N -0.174 5.174 19 C 0.121 3.879 20 N -0.304 5.304 21 C 0.320 3.680 22 O -0.339 6.339 23 C -0.219 4.219 24 C -0.189 4.189 25 C -0.182 4.182 26 C -0.170 4.170 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.174 0.826 35 H 0.187 0.813 36 H 0.257 0.743 37 H 0.145 0.855 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.510 -31.637 0.299 32.301 hybrid contribution -1.046 1.745 -0.028 2.034 sum 5.464 -29.892 0.271 30.389 Atomic orbital electron populations 1.69973 1.06090 1.26688 1.50565 1.25030 0.94879 0.99392 0.95154 0.86488 0.80097 0.83526 0.77614 1.19651 1.20966 1.20969 1.21204 0.93185 0.90632 1.50981 0.92327 1.19064 0.93841 0.90728 0.97747 1.21787 1.00001 0.90764 1.02128 1.23619 0.91151 0.83194 1.02441 1.86534 1.42478 1.14529 1.82815 1.20918 0.86795 0.83969 0.73515 1.90832 1.15934 1.87012 1.45068 1.19296 0.93449 0.91102 1.01468 1.22529 0.92556 1.02085 0.99604 1.22745 1.00891 0.85738 0.93751 1.67494 1.11404 1.25734 1.12800 1.18211 0.89210 0.84657 0.95775 1.43503 1.11586 1.02932 1.72426 1.19919 0.86563 0.85278 0.76237 1.90820 1.14510 1.84722 1.43807 1.22196 1.03450 0.89110 1.07101 1.23004 1.03331 1.00399 0.92190 1.23002 0.98237 0.97230 0.99741 1.21526 1.01406 0.90399 1.03675 0.92930 0.96181 0.96172 0.91994 0.91999 0.91202 0.91211 0.82635 0.81305 0.74266 0.85468 0.88071 0.87506 0.87647 0.87203 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 11 C 0.07 1.21 5.47 37.16 0.20 1.42 16 12 O -0.35 -5.54 9.57 -40.39 -0.39 -5.92 16 13 C 0.50 7.55 7.92 34.76 0.28 7.83 16 14 O -0.50 -8.53 16.23 -19.21 -0.31 -8.85 16 15 C -0.04 -0.53 5.90 -104.69 -0.62 -1.15 16 16 C -0.15 -1.53 9.70 -39.00 -0.38 -1.91 16 17 C 0.13 1.29 11.16 -17.62 -0.20 1.09 16 18 N -0.46 -5.68 7.85 -12.41 -0.10 -5.78 16 19 C 0.35 3.80 7.42 -154.76 -1.15 2.65 16 20 N -0.66 -5.27 5.39 -11.44 -0.06 -5.33 16 21 C 0.53 4.96 7.57 -10.98 -0.08 4.87 16 22 O -0.47 -6.29 14.52 5.56 0.08 -6.21 16 23 C -0.20 -1.09 6.19 -91.77 -0.57 -1.66 16 24 C -0.15 -0.69 10.24 -26.69 -0.27 -0.97 16 25 C -0.14 -0.77 10.05 -26.69 -0.27 -1.04 16 26 C -0.15 -1.54 9.51 -38.79 -0.37 -1.91 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.16 1.44 7.71 -52.49 -0.40 1.03 16 35 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.42 1.77 8.70 -40.82 -0.36 1.42 16 37 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 0.78 7.67 -51.93 -0.40 0.38 16 42 H 0.15 1.34 7.74 -52.49 -0.41 0.94 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -35.09 371.26 -9.34 -44.43 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.76 Total: -2.52 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -4.12 Total: -5.97 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.58 Total: -36.90 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.62 Total: -20.98 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.09 -9.34 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797026991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.990 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds