Wall clock time and date at job start Tue Mar 31 2020 12:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48500 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47034 * 299.99409 * 3 2 1 6 6 H 1.48502 * 109.47204 * 59.99234 * 3 2 1 7 7 C 1.37872 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46934 * 180.02562 * 10 9 7 12 12 O 1.45208 * 109.46926 * 180.02562 * 11 10 9 13 13 C 1.34663 * 116.99778 * 180.02562 * 12 11 10 14 14 O 1.21432 * 120.00268 * 359.97438 * 13 12 11 15 15 C 1.48062 * 120.00177 * 180.02562 * 13 12 11 16 16 C 1.40025 * 120.88752 * 359.97438 * 15 13 12 17 17 C 1.38000 * 119.14668 * 179.72919 * 16 15 13 18 18 N 1.31869 * 120.99885 * 359.97438 * 17 16 15 19 19 C 1.32269 * 121.97549 * 0.02562 * 18 17 16 20 20 N 1.39428 * 119.63855 * 180.02562 * 19 18 17 21 21 C 1.34776 * 119.99329 * 354.88739 * 20 19 18 22 22 O 1.21274 * 120.00718 * 5.09073 * 21 20 19 23 23 C 1.50706 * 119.99509 * 185.09052 * 21 20 19 24 24 C 1.53006 * 117.49620 * 248.75025 * 23 21 20 25 25 C 1.52997 * 117.49600 * 180.09244 * 23 21 20 26 26 C 1.39018 * 120.73091 * 359.97438 * 19 18 17 27 27 H 0.96995 * 120.00205 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47139 * 60.00243 * 9 7 2 29 29 H 1.09001 * 109.47440 * 299.99906 * 9 7 2 30 30 H 1.08997 * 109.46965 * 60.00183 * 10 9 7 31 31 H 1.09001 * 109.47013 * 300.00215 * 10 9 7 32 32 H 1.08997 * 109.47274 * 60.00215 * 11 10 9 33 33 H 1.09001 * 109.47317 * 299.99871 * 11 10 9 34 34 H 1.08000 * 120.42347 * 359.70903 * 16 15 13 35 35 H 1.08002 * 119.49684 * 179.97438 * 17 16 15 36 36 H 0.96998 * 120.00065 * 174.89235 * 20 19 18 37 37 H 1.08997 * 115.55136 * 34.41656 * 23 21 20 38 38 H 1.08996 * 117.49775 * 359.97438 * 24 23 21 39 39 H 1.08999 * 117.49788 * 145.02368 * 24 23 21 40 40 H 1.08998 * 117.49513 * 214.97777 * 25 23 21 41 41 H 1.08999 * 117.50358 * 359.97309 * 25 23 21 42 42 H 1.08001 * 120.53300 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 -0.0001 12 8 2.4241 -6.0907 0.0005 13 6 1.9094 -7.3351 -0.0005 14 8 0.7056 -7.4942 -0.0014 15 6 2.8113 -8.5093 0.0006 16 6 4.2022 -8.3474 0.0022 17 6 5.0091 -9.4668 0.0089 18 7 4.4893 -10.6787 0.0143 19 6 3.1821 -10.8802 0.0131 20 7 2.6852 -12.1829 0.0196 21 6 3.5316 -13.2273 -0.0770 22 8 4.7296 -13.0392 -0.0765 23 6 2.9891 -14.6292 -0.1856 24 6 3.2095 -15.5661 1.0038 25 6 4.0009 -15.7720 -0.2902 26 6 2.2980 -9.8074 0.0065 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6042 0.8905 31 1 2.8721 -3.6042 -0.8894 32 1 0.8541 -5.0446 -0.8903 33 1 0.8535 -5.0451 0.8897 34 1 4.6377 -7.3591 -0.0021 35 1 6.0827 -9.3485 0.0097 36 1 1.7305 -12.3375 0.0935 37 1 2.0561 -14.7306 -0.7400 38 1 3.7472 -15.1686 1.8646 39 1 2.4217 -16.2841 1.2316 40 1 3.7334 -16.6255 -0.9132 41 1 5.0589 -15.5100 -0.2809 42 1 1.2312 -9.9756 0.0060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797026991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:13 Heat of formation + Delta-G solvation = -76.764982 kcal Electronic energy + Delta-G solvation = -24482.029749 eV Core-core repulsion = 20620.522244 eV Total energy + Delta-G solvation = -3861.507505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.21262 -41.42934 -40.28066 -37.94028 -37.21574 -36.09441 -35.92313 -34.03512 -33.51840 -31.40732 -29.14669 -26.88669 -26.11966 -24.84861 -24.09499 -23.31935 -22.38765 -22.17429 -21.00516 -19.71622 -18.75710 -18.59829 -18.20474 -17.76654 -17.51864 -16.79433 -16.61196 -16.48372 -16.29706 -15.87104 -15.75379 -15.48458 -15.13977 -14.73581 -14.65507 -14.12547 -13.87824 -13.80650 -13.60413 -13.17360 -12.86248 -12.51053 -12.44788 -12.40677 -12.12367 -12.05653 -12.02512 -11.58829 -11.51581 -11.49945 -11.44399 -11.30540 -11.22903 -11.13277 -10.57347 -10.32187 -9.47242 -8.21616 -6.32743 -0.60804 -0.11474 1.26089 1.28878 1.42009 1.42742 1.53411 1.55934 1.76374 2.41595 2.68780 2.92107 3.12719 3.18067 3.31313 3.64014 3.73692 3.80485 3.84976 3.96109 3.99663 4.02348 4.09777 4.22999 4.38362 4.49169 4.51371 4.75884 4.80167 4.83283 4.90875 4.94934 5.01349 5.07348 5.08345 5.23131 5.28501 5.50145 5.52433 5.64693 5.80962 6.08342 6.19364 6.47406 6.77718 6.83524 7.16893 7.36953 8.90641 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.047102 B = 0.001728 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.306508 B =16195.389771 C =16699.081917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.094 4.094 11 C 0.078 3.922 12 O -0.345 6.345 13 C 0.508 3.492 14 O -0.524 6.524 15 C -0.060 4.060 16 C -0.139 4.139 17 C 0.127 3.873 18 N -0.487 5.487 19 C 0.345 3.655 20 N -0.646 5.646 21 C 0.529 3.471 22 O -0.518 6.518 23 C -0.197 4.197 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.139 4.139 27 H 0.264 0.736 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.169 0.831 35 H 0.195 0.805 36 H 0.438 0.562 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -32.156 0.259 32.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.132 4.132 11 C 0.005 3.995 12 O -0.260 6.260 13 C 0.353 3.647 14 O -0.414 6.414 15 C -0.069 4.069 16 C -0.160 4.160 17 C -0.031 4.031 18 N -0.202 5.202 19 C 0.114 3.886 20 N -0.294 5.294 21 C 0.317 3.683 22 O -0.390 6.390 23 C -0.218 4.218 24 C -0.178 4.178 25 C -0.189 4.189 26 C -0.162 4.162 27 H 0.073 0.927 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.186 0.814 35 H 0.212 0.788 36 H 0.278 0.722 37 H 0.177 0.823 38 H 0.105 0.895 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.103 0.897 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.119 -32.741 0.248 33.507 hybrid contribution -1.232 1.997 -0.003 2.347 sum 5.887 -30.744 0.245 31.303 Atomic orbital electron populations 1.70102 1.07830 1.27817 1.51560 1.25983 0.95766 1.03438 0.94645 0.85359 0.79158 0.78597 0.77689 1.18370 1.20483 1.20489 1.21664 0.93802 0.91876 1.50687 0.91616 1.18952 0.94314 0.92428 0.95599 1.21470 0.98774 0.90132 1.02798 1.23258 0.90849 0.83099 1.02302 1.86505 1.41735 1.14704 1.83087 1.21356 0.86936 0.83964 0.72413 1.90821 1.17088 1.87147 1.46380 1.19220 0.93732 0.90390 1.03595 1.22661 0.91833 1.02830 0.98701 1.23161 1.02095 0.84992 0.92822 1.67551 1.12394 1.26847 1.13440 1.18403 0.88892 0.85742 0.95595 1.43519 1.12566 1.01863 1.71497 1.20646 0.86103 0.86690 0.74873 1.90795 1.16598 1.85573 1.46084 1.22287 1.04480 0.86635 1.08365 1.23088 1.03465 1.00040 0.91199 1.23057 0.97014 0.97890 1.00986 1.21612 1.02109 0.89728 1.02748 0.92728 0.98361 0.98350 0.91256 0.91267 0.91433 0.91435 0.81383 0.78816 0.72175 0.82337 0.89536 0.84741 0.85346 0.89680 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 3 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.74 5.53 30.60 0.17 -3.57 16 11 C 0.08 2.75 5.47 71.98 0.39 3.15 16 12 O -0.34 -10.66 9.57 -55.72 -0.53 -11.19 16 13 C 0.51 14.85 7.92 70.43 0.56 15.40 16 14 O -0.52 -17.70 16.23 20.06 0.33 -17.37 16 15 C -0.06 -1.39 5.90 -19.91 -0.12 -1.51 16 16 C -0.14 -2.72 9.70 22.65 0.22 -2.50 16 17 C 0.13 2.43 11.16 84.63 0.94 3.37 16 18 N -0.49 -11.73 7.85 -193.19 -1.52 -13.25 16 19 C 0.34 7.12 7.42 132.93 0.99 8.10 16 20 N -0.65 -9.57 5.39 -308.50 -1.66 -11.23 16 21 C 0.53 9.42 7.57 87.66 0.66 10.09 16 22 O -0.52 -14.07 14.52 -3.01 -0.04 -14.11 16 23 C -0.20 -1.80 6.19 -11.54 -0.07 -1.87 16 24 C -0.14 -1.01 10.24 30.62 0.31 -0.70 16 25 C -0.15 -1.43 10.05 30.62 0.31 -1.12 16 26 C -0.14 -2.76 9.51 22.78 0.22 -2.55 16 27 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 28 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.17 2.80 7.71 -2.91 -0.02 2.78 16 35 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.44 2.86 8.70 -92.71 -0.81 2.06 16 37 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 1.24 7.67 -2.39 -0.02 1.23 16 42 H 0.17 2.71 7.74 -2.91 -0.02 2.69 16 Total: -1.00 -76.65 371.26 4.55 -72.10 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.24 Total: 7.12 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 5.43 Total: -1.83 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.90 Total: -80.31 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.25 Total: -42.67 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -76.65 4.55 -72.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797026991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.668 kcal (2) G-P(sol) polarization free energy of solvation -76.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds